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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    18401 1l6y:B (1.9) BS01 ZN 4.2.1.24 GO:0000287 ... P0ACB2 11909869
    18402 1l6y:B (1.9) BS02 4OX 4.2.1.24 GO:0000287 ... P0ACB2 11909869
    18403 1l7e:A (1.9) BS01 NAI 7.1.1.1 GO:0000166 ... Q2RSB2 12379117
    18404 1l7e:D (1.9) BS01 NAI 7.1.1.1 GO:0000166 ... Q2RSB2 12379117
    18405 1l7f:A (1.8) BS01 CA 3.2.1.18 GO:0004308 ... P03472 12014958
    18406 1l7f:A (1.8) BS02 BCZ 3.2.1.18 GO:0004308 ... P03472 12014958
    18407 1l7g:A (1.85) BS01 CA 3.2.1.18 GO:0004308 ... P03472 12014958
    18408 1l7g:A (1.85) BS02 BCZ 3.2.1.18 GO:0004308 ... P03472 12014958
    18409 1l7h:A (1.85) BS01 CA 3.2.1.18 GO:0004308 ... P03472 12014958
    18410 1l7h:A (1.85) BS02 CA 3.2.1.18 GO:0004308 ... P03472 12014958
    18411 1l7h:A (1.85) BS03 BCZ 3.2.1.18 GO:0004308 ... P03472 12014958
    18412 1l7k:A (1.95) BS01 GLA 5.1.3.3 GO:0003824 ... Q9ZB17 11907040
    18413 1l7k:B (1.95) BS01 GLA 5.1.3.3 GO:0003824 ... Q9ZB17 11907040
    18414 1l7l:A (1.5) BS01 CA ? GO:0005737 ... Q05097 N/A
    18415 1l7m:A (1.48) BS01 PO4 3.1.3.3 GO:0000287 ... Q58989 12051918
    18416 1l7m:A (1.48) BS02 MG 3.1.3.3 GO:0000287 ... Q58989 12051918
    18417 1l7m:A (1.48) BS03 PO4 3.1.3.3 GO:0000287 ... Q58989 12051918
    18418 1l7m:A (1.48) BS04 PO4 3.1.3.3 GO:0000287 ... Q58989 12051918
    18419 1l7m:B (1.48) BS01 PO4 3.1.3.3 GO:0000287 ... Q58989 12051918
    18420 1l7m:B (1.48) BS02 MG 3.1.3.3 GO:0000287 ... Q58989 12051918
    18421 1l7n:A (1.8) BS01 ALF 3.1.3.3 GO:0000287 ... Q58989 12051918
    18422 1l7n:A (1.8) BS02 MG 3.1.3.3 GO:0000287 ... Q58989 12051918
    18423 1l7n:A (1.8) BS03 AF3 3.1.3.3 GO:0000287 ... Q58989 12051918
    18424 1l7n:B (1.8) BS01 ALF 3.1.3.3 GO:0000287 ... Q58989 12051918
    18425 1l7n:B (1.8) BS02 MG 3.1.3.3 GO:0000287 ... Q58989 12051918
    18426 1l7n:B (1.8) BS03 AF3 3.1.3.3 GO:0000287 ... Q58989 12051918
    18427 1l7o:A (2.2) BS01 ZN 3.1.3.3 GO:0000287 ... Q58989 12051918
    18428 1l7o:B (2.2) BS01 ZN 3.1.3.3 GO:0000287 ... Q58989 12051918
    18429 1l7p:A (1.9) BS01 SEP 3.1.3.3 GO:0000287 ... Q58989 12051918
    18430 1l7p:B (1.9) BS01 SEP 3.1.3.3 GO:0000287 ... Q58989 12051918
    18431 1l7v:C (3.2) BS01 V4O 7.6.2.8 GO:0005515 ... P06611 12004122
    18432 1l7v:D (3.2) BS01 V4O 7.6.2.8 GO:0005515 ... P06611 12004122
    18433 1l7x:A (2.3) BS01 NBG 2.4.1.1 GO:0000166 ... P06737 12204691
    18434 1l7x:A (2.3) BS02 PLP 2.4.1.1 GO:0000166 ... P06737 12204691
    18435 1l7x:A (2.3) BS03 700 2.4.1.1 GO:0000166 ... P06737 12204691 MOAD: ic50=0.145uM
    BindingDB: IC50=45nM
    18436 1l7x:A (2.3) BS04 CFF 2.4.1.1 GO:0000166 ... P06737 12204691 MOAD: Kd=92uM
    PDBbind: -logKd/Ki=4.04, Kd=92uM
    18437 1l7x:A (2.3) BS05 CFF 2.4.1.1 GO:0000166 ... P06737 12204691 MOAD: Kd=92uM
    PDBbind: -logKd/Ki=4.04, Kd=92uM
    18438 1l7x:A (2.3) BS06 700 2.4.1.1 GO:0000166 ... P06737 12204691 MOAD: ic50=0.145uM
    BindingDB: IC50=45nM
    18439 1l7x:B (2.3) BS01 700 2.4.1.1 GO:0000166 ... P06737 12204691 MOAD: ic50=0.145uM
    BindingDB: IC50=45nM
    18440 1l7x:B (2.3) BS02 NBG 2.4.1.1 GO:0000166 ... P06737 12204691
    18441 1l7x:B (2.3) BS03 PLP 2.4.1.1 GO:0000166 ... P06737 12204691
    18442 1l7x:B (2.3) BS04 700 2.4.1.1 GO:0000166 ... P06737 12204691 MOAD: ic50=0.145uM
    BindingDB: IC50=45nM
    18443 1l7x:B (2.3) BS05 CFF 2.4.1.1 GO:0000166 ... P06737 12204691 MOAD: Kd=92uM
    PDBbind: -logKd/Ki=4.04, Kd=92uM
    18444 1l7z:A (2.3) BS01 peptide ? GO:0000086 ... P0DP23 14765114
    18445 1l7z:A (2.3) BS02 CA ? GO:0000086 ... P0DP23 14765114
    18446 1l7z:A (2.3) BS03 CA ? GO:0000086 ... P0DP23 14765114
    18447 1l7z:A (2.3) BS04 CA ? GO:0000086 ... P0DP23 14765114
    18448 1l7z:A (2.3) BS05 CA ? GO:0000086 ... P0DP23 14765114
    18449 1l83:A (1.7) BS01 BNZ 3.2.1.17 GO:0003796 ... P00720 1731252 MOAD: Kd=0.4mM
    PDBbind: -logKd/Ki=3.40, Kd=0.40mM
    18450 1l84:A (1.9) BS01 BNZ 3.2.1.17 GO:0003796 ... P00720 1731252
    18451 1l8a:A (1.85) BS01 TPP 1.2.4.1 GO:0000287 ... P0AFG8 11955070
    18452 1l8a:A (1.85) BS02 MG 1.2.4.1 GO:0000287 ... P0AFG8 11955070
    18453 1l8a:A (1.85) BS03 TPP 1.2.4.1 GO:0000287 ... P0AFG8 11955070
    18454 1l8a:B (1.85) BS01 MG 1.2.4.1 GO:0000287 ... P0AFG8 11955070
    18455 1l8a:B (1.85) BS02 TPP 1.2.4.1 GO:0000287 ... P0AFG8 11955070
    18456 1l8a:B (1.85) BS03 TPP 1.2.4.1 GO:0000287 ... P0AFG8 11955070
    18457 1l8b:A (1.8) BS01 MGP ? GO:0003723 ... P63073 12054859 MOAD: Kd=0.14uM
    BindingDB: Kd=10nM
    18458 1l8b:B (1.8) BS01 MGP ? GO:0003723 ... P63073 12054859 MOAD: Kd=0.14uM
    BindingDB: Kd=10nM
    18459 1l8l:A (2.51) BS01 APO 3.1.3.3 GO:0000287 ... P78330 12213811
    18460 1l8l:B (2.51) BS01 APO 3.1.3.3 GO:0000287 ... P78330 12213811
    18461 1l8n:A (1.5) BS01 XYP 3.2.1.131 GO:0004553 ... Q8VVD2 14573597
    18462 1l8n:A (1.5) BS02 XYP 3.2.1.131 GO:0004553 ... Q8VVD2 14573597
    18463 1l8n:A (1.5) BS03 GCW 3.2.1.131 GO:0004553 ... Q8VVD2 14573597
    18464 1l8o:A (2.8) BS01 PO4 3.1.3.3 GO:0000287 ... P78330 12213811
    18465 1l8o:A (2.8) BS02 SER 3.1.3.3 GO:0000287 ... P78330 12213811
    18466 1l8o:B (2.8) BS01 PO4 3.1.3.3 GO:0000287 ... P78330 12213811
    18467 1l8o:B (2.8) BS02 SER 3.1.3.3 GO:0000287 ... P78330 12213811
    18468 1l8p:A (2.1) BS01 MG 4.2.1.11 GO:0000015 ... P00924 12054465
    18469 1l8p:A (2.1) BS02 PAH 4.2.1.11 GO:0000015 ... P00924 12054465
    18470 1l8p:B (2.1) BS01 MG 4.2.1.11 GO:0000015 ... P00924 12054465
    18471 1l8p:B (2.1) BS02 PAH 4.2.1.11 GO:0000015 ... P00924 12054465
    18472 1l8p:C (2.1) BS01 MG 4.2.1.11 GO:0000015 ... P00924 12054465
    18473 1l8p:C (2.1) BS02 PAH 4.2.1.11 GO:0000015 ... P00924 12054465
    18474 1l8p:D (2.1) BS01 MG 4.2.1.11 GO:0000015 ... P00924 12054465
    18475 1l8p:D (2.1) BS02 PAH 4.2.1.11 GO:0000015 ... P00924 12054465
    18476 1l8s:A (1.55) BS01 CA 3.1.1.4 GO:0002446 ... P00592 12475227
    18477 1l8s:A (1.55) BS02 PO4 3.1.1.4 GO:0002446 ... P00592 12475227
    18478 1l8s:A (1.55) BS03 PO4 3.1.1.4 GO:0002446 ... P00592 12475227
    18479 1l8s:A (1.55) BS04 ACT 3.1.1.4 GO:0002446 ... P00592 12475227
    18480 1l8s:B (1.55) BS01 PO4 3.1.1.4 GO:0002446 ... P00592 12475227
    18481 1l8s:B (1.55) BS02 CA 3.1.1.4 GO:0002446 ... P00592 12475227
    18482 1l8s:B (1.55) BS03 PO4 3.1.1.4 GO:0002446 ... P00592 12475227
    18483 1l8s:B (1.55) BS04 PO4 3.1.1.4 GO:0002446 ... P00592 12475227
    18484 1l8s:B (1.55) BS05 LPE 3.1.1.4 GO:0002446 ... P00592 12475227
    18485 1l8x:B (2.7) BS01 CO 4.98.1.1 GO:0004325 ... P16622 12427010
    18486 1l9a:A (2.9) BS01 rna ? GO:0003723 ... Q58440 12086622
    18487 1l9b:C (2.4) BS01 HEM ? GO:0009055 ... P0C0X8 12051924
    18488 1l9b:L (2.4) BS01 BCL ? GO:0009772 ... P0C0Y8 12051924
    18489 1l9b:L (2.4) BS02 BCL ? GO:0009772 ... P0C0Y8 12051924
    18490 1l9b:L (2.4) BS03 BPH ? GO:0009772 ... P0C0Y8 12051924
    18491 1l9b:L (2.4) BS04 FE2 ? GO:0009772 ... P0C0Y8 12051924
    18492 1l9b:L (2.4) BS05 BCL ? GO:0009772 ... P0C0Y8 12051924
    18493 1l9b:L (2.4) BS06 BPH ? GO:0009772 ... P0C0Y8 12051924
    18494 1l9b:M (2.4) BS01 BCL ? GO:0009772 ... P0C0Y9 12051924
    18495 1l9b:M (2.4) BS02 BPH ? GO:0009772 ... P0C0Y9 12051924
    18496 1l9b:M (2.4) BS03 FE2 ? GO:0009772 ... P0C0Y9 12051924
    18497 1l9b:M (2.4) BS04 BCL ? GO:0009772 ... P0C0Y9 12051924
    18498 1l9b:M (2.4) BS05 BCL ? GO:0009772 ... P0C0Y9 12051924
    18499 1l9b:M (2.4) BS06 BPH ? GO:0009772 ... P0C0Y9 12051924
    18500 1l9b:M (2.4) BS07 U10 ? GO:0009772 ... P0C0Y9 12051924
    18501 1l9c:A (1.9) BS01 FAD 1.5.3.1 GO:0005737 ... P40859 12146941
    18502 1l9c:B (1.9) BS01 FAD 1.5.3.1 GO:0005737 ... P40859 12146941
    18503 1l9d:A (1.95) BS01 FAD 1.5.3.1 GO:0005737 ... P40859 12146941
    18504 1l9d:A (1.95) BS02 PYC 1.5.3.1 GO:0005737 ... P40859 12146941
    18505 1l9d:B (1.95) BS01 FAD 1.5.3.1 GO:0005737 ... P40859 12146941
    18506 1l9d:B (1.95) BS02 PYC 1.5.3.1 GO:0005737 ... P40859 12146941
    18507 1l9e:A (1.85) BS01 FAD 1.5.3.1 GO:0005737 ... P40859 12146941
    18508 1l9e:B (1.85) BS01 FAD 1.5.3.1 GO:0005737 ... P40859 12146941
    18509 1l9h:A (2.6) BS01 ZN ? GO:0000139 ... P02699 11972040
    18510 1l9h:A (2.6) BS02 ZN ? GO:0000139 ... P02699 11972040
    18511 1l9h:A (2.6) BS03 ZN ? GO:0000139 ... P02699 11972040
    18512 1l9h:A (2.6) BS04 RET ? GO:0000139 ... P02699 11972040
    18513 1l9h:B (2.6) BS01 ZN ? GO:0000139 ... P02699 11972040
    18514 1l9h:B (2.6) BS02 ZN ? GO:0000139 ... P02699 11972040
    18515 1l9h:B (2.6) BS03 ZN ? GO:0000139 ... P02699 11972040
    18516 1l9h:B (2.6) BS04 RET ? GO:0000139 ... P02699 11972040
    18517 1l9j:C (3.25) BS01 HEM ? GO:0009055 ... P0C0X8 12051924
    18518 1l9j:D (3.25) BS01 HEM ? GO:0009055 ... P0C0X8 12051924
    18519 1l9j:L (3.25) BS01 BCL ? GO:0009772 ... P0C0Y8 12051924
    18520 1l9j:L (3.25) BS02 BCL ? GO:0009772 ... P0C0Y8 12051924
    18521 1l9j:L (3.25) BS03 BPH ? GO:0009772 ... P0C0Y8 12051924
    18522 1l9j:L (3.25) BS04 FE2 ? GO:0009772 ... P0C0Y8 12051924
    18523 1l9j:L (3.25) BS05 BCL ? GO:0009772 ... P0C0Y8 12051924
    18524 1l9j:L (3.25) BS06 BPH ? GO:0009772 ... P0C0Y8 12051924
    18525 1l9j:M (3.25) BS01 BCL ? GO:0009772 ... P0C0Y9 12051924
    18526 1l9j:M (3.25) BS02 BPH ? GO:0009772 ... P0C0Y9 12051924
    18527 1l9j:M (3.25) BS03 FE2 ? GO:0009772 ... P0C0Y9 12051924
    18528 1l9j:M (3.25) BS04 BCL ? GO:0009772 ... P0C0Y9 12051924
    18529 1l9j:M (3.25) BS05 BCL ? GO:0009772 ... P0C0Y9 12051924
    18530 1l9j:M (3.25) BS06 BPH ? GO:0009772 ... P0C0Y9 12051924
    18531 1l9j:M (3.25) BS07 U10 ? GO:0009772 ... P0C0Y9 12051924
    18532 1l9j:R (3.25) BS01 BCL ? GO:0009772 ... P0C0Y8 12051924
    18533 1l9j:R (3.25) BS02 BCL ? GO:0009772 ... P0C0Y8 12051924
    18534 1l9j:R (3.25) BS03 BPH ? GO:0009772 ... P0C0Y8 12051924
    18535 1l9j:R (3.25) BS04 FE2 ? GO:0009772 ... P0C0Y8 12051924
    18536 1l9j:R (3.25) BS05 BCL ? GO:0009772 ... P0C0Y8 12051924
    18537 1l9j:R (3.25) BS06 BPH ? GO:0009772 ... P0C0Y8 12051924
    18538 1l9j:S (3.25) BS01 BCL ? GO:0009772 ... P0C0Y9 12051924
    18539 1l9j:S (3.25) BS02 BPH ? GO:0009772 ... P0C0Y9 12051924
    18540 1l9j:S (3.25) BS03 FE2 ? GO:0009772 ... P0C0Y9 12051924
    18541 1l9j:S (3.25) BS04 BCL ? GO:0009772 ... P0C0Y9 12051924
    18542 1l9j:S (3.25) BS05 BCL ? GO:0009772 ... P0C0Y9 12051924
    18543 1l9j:S (3.25) BS06 BPH ? GO:0009772 ... P0C0Y9 12051924
    18544 1l9j:S (3.25) BS07 U10 ? GO:0009772 ... P0C0Y9 12051924
    18545 1l9m:A (2.1) BS01 CA 2.3.2.13 GO:0003810 ... Q08188 11980702
    18546 1l9m:B (2.1) BS01 CA 2.3.2.13 GO:0003810 ... Q08188 11980702
    18547 1l9n:A (2.1) BS01 CA 2.3.2.13 GO:0003810 ... Q08188 11980702
    18548 1l9n:A (2.1) BS02 CA 2.3.2.13 GO:0003810 ... Q08188 11980702
    18549 1l9n:A (2.1) BS03 CA 2.3.2.13 GO:0003810 ... Q08188 11980702
    18550 1l9n:B (2.1) BS01 CA 2.3.2.13 GO:0003810 ... Q08188 11980702
    18551 1l9n:B (2.1) BS02 CA 2.3.2.13 GO:0003810 ... Q08188 11980702
    18552 1l9n:B (2.1) BS03 CA 2.3.2.13 GO:0003810 ... Q08188 11980702
    18553 1l9o:A (1.7) BS01 CU 1.7.2.1 GO:0005507 ... P38501 12538888
    18554 1l9o:A (1.7) BS02 CU 1.7.2.1 GO:0005507 ... P38501 12538888
    18555 1l9o:B (1.7) BS01 NO2 1.7.2.1 GO:0005507 ... P38501 12538888
    18556 1l9o:B (1.7) BS02 CU 1.7.2.1 GO:0005507 ... P38501 12538888
    18557 1l9o:B (1.7) BS03 CU 1.7.2.1 GO:0005507 ... P38501 12538888
    18558 1l9o:C (1.7) BS01 CU 1.7.2.1 GO:0005507 ... P38501 12538888
    18559 1l9o:C (1.7) BS02 CU 1.7.2.1 GO:0005507 ... P38501 12538888
    18560 1l9p:A (1.75) BS01 CU 1.7.2.1 GO:0005507 ... P38501 12538888
    18561 1l9p:A (1.75) BS02 CU 1.7.2.1 GO:0005507 ... P38501 12538888
    18562 1l9p:B (1.75) BS01 CU 1.7.2.1 GO:0005507 ... P38501 12538888
    18563 1l9p:B (1.75) BS02 CU 1.7.2.1 GO:0005507 ... P38501 12538888
    18564 1l9p:C (1.75) BS01 CU 1.7.2.1 GO:0005507 ... P38501 12538888
    18565 1l9p:C (1.75) BS02 CU 1.7.2.1 GO:0005507 ... P38501 12538888
    18566 1l9q:A (1.7) BS01 CU 1.7.2.1 GO:0005507 ... P38501 12538888
    18567 1l9q:A (1.7) BS02 CU 1.7.2.1 GO:0005507 ... P38501 12538888
    18568 1l9q:A (1.7) BS03 NO2 1.7.2.1 GO:0005507 ... P38501 12538888
    18569 1l9q:A (1.7) BS04 NO2 1.7.2.1 GO:0005507 ... P38501 12538888
    18570 1l9q:B (1.7) BS01 NO2 1.7.2.1 GO:0005507 ... P38501 12538888
    18571 1l9q:B (1.7) BS02 CU 1.7.2.1 GO:0005507 ... P38501 12538888
    18572 1l9q:B (1.7) BS03 CU 1.7.2.1 GO:0005507 ... P38501 12538888
    18573 1l9q:B (1.7) BS04 NO2 1.7.2.1 GO:0005507 ... P38501 12538888
    18574 1l9q:C (1.7) BS01 NO2 1.7.2.1 GO:0005507 ... P38501 12538888
    18575 1l9q:C (1.7) BS02 NO2 1.7.2.1 GO:0005507 ... P38501 12538888
    18576 1l9q:C (1.7) BS03 CU 1.7.2.1 GO:0005507 ... P38501 12538888
    18577 1l9q:C (1.7) BS04 CU 1.7.2.1 GO:0005507 ... P38501 12538888
    18578 1l9r:A (1.78) BS01 CU 1.7.2.1 GO:0005507 ... P38501 12538888
    18579 1l9r:A (1.78) BS02 CU 1.7.2.1 GO:0005507 ... P38501 12538888
    18580 1l9r:A (1.78) BS03 NO2 1.7.2.1 GO:0005507 ... P38501 12538888
    18581 1l9r:B (1.78) BS01 NO2 1.7.2.1 GO:0005507 ... P38501 12538888
    18582 1l9r:B (1.78) BS02 CU 1.7.2.1 GO:0005507 ... P38501 12538888
    18583 1l9r:B (1.78) BS03 CU 1.7.2.1 GO:0005507 ... P38501 12538888
    18584 1l9r:C (1.78) BS01 NO2 1.7.2.1 GO:0005507 ... P38501 12538888
    18585 1l9r:C (1.78) BS02 CU 1.7.2.1 GO:0005507 ... P38501 12538888
    18586 1l9r:C (1.78) BS03 CU 1.7.2.1 GO:0005507 ... P38501 12538888
    18587 1l9s:A (1.78) BS01 CU 1.7.2.1 GO:0005507 ... P38501 12538888
    18588 1l9s:A (1.78) BS02 CU 1.7.2.1 GO:0005507 ... P38501 12538888
    18589 1l9s:A (1.78) BS03 NO2 1.7.2.1 GO:0005507 ... P38501 12538888
    18590 1l9s:B (1.78) BS01 NO2 1.7.2.1 GO:0005507 ... P38501 12538888
    18591 1l9s:B (1.78) BS02 CU 1.7.2.1 GO:0005507 ... P38501 12538888
    18592 1l9s:B (1.78) BS03 CU 1.7.2.1 GO:0005507 ... P38501 12538888
    18593 1l9s:C (1.78) BS01 NO2 1.7.2.1 GO:0005507 ... P38501 12538888
    18594 1l9s:C (1.78) BS02 CU 1.7.2.1 GO:0005507 ... P38501 12538888
    18595 1l9s:C (1.78) BS03 CU 1.7.2.1 GO:0005507 ... P38501 12538888
    18596 1l9t:A (1.75) BS01 CU 1.7.2.1 GO:0005507 ... P38501 12538888
    18597 1l9t:A (1.75) BS02 CU 1.7.2.1 GO:0005507 ... P38501 12538888
    18598 1l9t:A (1.75) BS03 NO2 1.7.2.1 GO:0005507 ... P38501 12538888
    18599 1l9t:A (1.75) BS04 NO2 1.7.2.1 GO:0005507 ... P38501 12538888
    18600 1l9t:B (1.75) BS01 NO2 1.7.2.1 GO:0005507 ... P38501 12538888

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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