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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1601 1azq:A (1.94) BS02 dna ? GO:0003677 ... P13123 9515968
    1602 1azr:A (2.4) BS01 CU ? GO:0005507 ... P00282 15299504
    1603 1azr:B (2.4) BS01 CU ? GO:0005507 ... P00282 15299504
    1604 1azr:C (2.4) BS01 CU ? GO:0005507 ... P00282 15299504
    1605 1azr:D (2.4) BS01 CU ? GO:0005507 ... P00282 15299504
    1606 1azs:C (2.3) BS01 MG ? GO:0003924 ... P04896 9417641
    1607 1azs:C (2.3) BS02 GSP ? GO:0003924 ... P04896 9417641
    1608 1azt:A (2.3) BS01 MG ? GO:0003924 ... P04896 9395396
    1609 1azt:A (2.3) BS02 GSP ? GO:0003924 ... P04896 9395396
    1610 1azt:B (2.3) BS01 MG ? GO:0003924 ... P04896 9395396
    1611 1azt:B (2.3) BS02 GSP ? GO:0003924 ... P04896 9395396
    1612 1azu:A (2.7) BS01 CU ? GO:0005507 ... P00282 N/A
    1613 1azv:A (1.9) BS01 CU 1.15.1.1 GO:0000302 ... P00441 9541385
    1614 1azv:A (1.9) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 9541385
    1615 1azv:B (1.9) BS01 CU 1.15.1.1 GO:0000302 ... P00441 9541385
    1616 1azv:B (1.9) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 9541385
    1617 1azx:I (2.9) BS01 Z9L ? GO:0002020 ... P01008 9405673
    1618 1azx:I (2.9) BS02 GU6 ? GO:0002020 ... P01008 9405673
    1619 1azx:I (2.9) BS03 GU1 ? GO:0002020 ... P01008 9405673
    1620 1azx:I (2.9) BS04 Z9H ? GO:0002020 ... P01008 9405673
    1621 1azx:L (2.9) BS01 Z9L ? GO:0002020 ... P01008 9405673
    1622 1azx:L (2.9) BS02 Z9K ? GO:0002020 ... P01008 9405673
    1623 1azx:L (2.9) BS03 GU6 ? GO:0002020 ... P01008 9405673
    1624 1azx:L (2.9) BS04 GU1 ? GO:0002020 ... P01008 9405673
    1625 1azx:L (2.9) BS05 Z9H ? GO:0002020 ... P01008 9405673
    1626 1b01:A (2.56) BS01 dna ? GO:0003677 ... P13920 9857196
    1627 1b01:A (2.56) BS02 dna ? GO:0003677 ... P13920 9857196
    1628 1b01:B (2.56) BS01 dna ? GO:0003677 ... P13920 9857196
    1629 1b01:B (2.56) BS02 dna ? GO:0003677 ... P13920 9857196
    1630 1b02:A (2.5) BS01 UFP 2.1.1.45 GO:0004799 ... P0CI79 10091656
    1631 1b02:A (2.5) BS02 C2F 2.1.1.45 GO:0004799 ... P0CI79 10091656
    1632 1b05:A (2.0) BS01 peptide ? GO:0015031 ... P06202 10438628
    1633 1b06:A (2.2) BS01 FE 1.15.1.1 GO:0004784 ... Q08713 9878438
    1634 1b06:B (2.2) BS01 FE 1.15.1.1 GO:0004784 ... Q08713 9878438
    1635 1b06:C (2.2) BS01 FE 1.15.1.1 GO:0004784 ... Q08713 9878438
    1636 1b06:D (2.2) BS01 FE 1.15.1.1 GO:0004784 ... Q08713 9878438
    1637 1b06:E (2.2) BS01 FE 1.15.1.1 GO:0004784 ... Q08713 9878438
    1638 1b06:F (2.2) BS01 FE 1.15.1.1 GO:0004784 ... Q08713 9878438
    1639 1b09:A (2.5) BS01 CA ? GO:0001849 ... P02741 10368284
    1640 1b09:A (2.5) BS02 CA ? GO:0001849 ... P02741 10368284
    1641 1b09:A (2.5) BS03 PC ? GO:0001849 ... P02741 10368284
    1642 1b09:B (2.5) BS01 CA ? GO:0001849 ... P02741 10368284
    1643 1b09:B (2.5) BS02 CA ? GO:0001849 ... P02741 10368284
    1644 1b09:B (2.5) BS03 PC ? GO:0001849 ... P02741 10368284
    1645 1b09:C (2.5) BS01 CA ? GO:0001849 ... P02741 10368284
    1646 1b09:C (2.5) BS02 CA ? GO:0001849 ... P02741 10368284
    1647 1b09:C (2.5) BS03 PC ? GO:0001849 ... P02741 10368284
    1648 1b09:D (2.5) BS01 CA ? GO:0001849 ... P02741 10368284
    1649 1b09:D (2.5) BS02 CA ? GO:0001849 ... P02741 10368284
    1650 1b09:D (2.5) BS03 PC ? GO:0001849 ... P02741 10368284
    1651 1b09:E (2.5) BS01 CA ? GO:0001849 ... P02741 10368284
    1652 1b09:E (2.5) BS02 CA ? GO:0001849 ... P02741 10368284
    1653 1b09:E (2.5) BS03 PC ? GO:0001849 ... P02741 10368284
    1654 1b0b:A (1.43) BS01 CYN ? GO:0005576 ... P41260 10423453
    1655 1b0b:A (1.43) BS02 HEM ? GO:0005576 ... P41260 10423453
    1656 1b0d:A (1.84) BS01 TSU 3.2.1.17 GO:0003796 ... P00698 11418760
    1657 1b0e:A (1.8) BS01 CA 3.4.21.36 GO:0004252 ... P00772 9651152
    1658 1b0e:A (1.8) BS02 SEI 3.4.21.36 GO:0004252 ... P00772 9651152
    1659 1b0f:A (3.0) BS01 FUC 3.4.21.37 GO:0000122 ... P08246 9651152
    1660 1b0f:A (3.0) BS02 SEI 3.4.21.37 GO:0000122 ... P08246 9651152 PDBbind: -logKd/Ki=7.70, Ki=20nM
    BindingDB: Ki=25nM
    1661 1b0h:A (1.9) BS01 peptide ? GO:0015031 ... P06202 10422831
    1662 1b0j:A (2.5) BS01 SF4 4.2.1.3 GO:0003994 ... P16276 10631981
    1663 1b0k:A (2.5) BS01 FLC 4.2.1.3 GO:0003994 ... P16276 10631981
    1664 1b0k:A (2.5) BS02 SF4 4.2.1.3 GO:0003994 ... P16276 10631981
    1665 1b0k:A (2.5) BS03 O 4.2.1.3 GO:0003994 ... P16276 10631981
    1666 1b0l:A (2.2) BS01 FE 3.4.21.- GO:0001503 ... P02788 10089347
    1667 1b0l:A (2.2) BS02 FE 3.4.21.- GO:0001503 ... P02788 10089347
    1668 1b0l:A (2.2) BS03 CO3 3.4.21.- GO:0001503 ... P02788 10089347
    1669 1b0l:A (2.2) BS04 CO3 3.4.21.- GO:0001503 ... P02788 10089347
    1670 1b0m:A (2.5) BS01 FLC 4.2.1.3 GO:0003994 ... P16276 10631981
    1671 1b0m:A (2.5) BS02 SF4 4.2.1.3 GO:0003994 ... P16276 10631981
    1672 1b0o:A (2.5) BS01 PLM ? GO:0005515 ... P02754 9867826
    1673 1b0p:A (2.31) BS01 MG 1.2.7.1 GO:0003824 ... P94692 10048931
    1674 1b0p:A (2.31) BS02 CA 1.2.7.1 GO:0003824 ... P94692 10048931
    1675 1b0p:A (2.31) BS03 SF4 1.2.7.1 GO:0003824 ... P94692 10048931
    1676 1b0p:A (2.31) BS04 SF4 1.2.7.1 GO:0003824 ... P94692 10048931
    1677 1b0p:A (2.31) BS05 SF4 1.2.7.1 GO:0003824 ... P94692 10048931
    1678 1b0p:A (2.31) BS06 TPP 1.2.7.1 GO:0003824 ... P94692 10048931
    1679 1b0p:B (2.31) BS01 MG 1.2.7.1 GO:0003824 ... P94692 10048931
    1680 1b0p:B (2.31) BS02 CA 1.2.7.1 GO:0003824 ... P94692 10048931
    1681 1b0p:B (2.31) BS03 SF4 1.2.7.1 GO:0003824 ... P94692 10048931
    1682 1b0p:B (2.31) BS04 SF4 1.2.7.1 GO:0003824 ... P94692 10048931
    1683 1b0p:B (2.31) BS05 SF4 1.2.7.1 GO:0003824 ... P94692 10048931
    1684 1b0p:B (2.31) BS06 TPP 1.2.7.1 GO:0003824 ... P94692 10048931
    1685 1b0u:A (1.5) BS01 ATP 7.4.2.1 GO:0003333 ... P02915 9872322
    1686 1b0y:A (0.93) BS01 SF4 ? GO:0009055 ... P00260 10531472
    1687 1b12:A (1.95) BS01 1PN 3.4.21.89 GO:0004252 ... P00803 9823901
    1688 1b12:B (1.95) BS01 1PN 3.4.21.89 GO:0004252 ... P00803 9823901
    1689 1b12:C (1.95) BS01 1PN 3.4.21.89 GO:0004252 ... P00803 9823901
    1690 1b12:D (1.95) BS01 1PN 3.4.21.89 GO:0004252 ... P00803 9823901
    1691 1b14:A (2.4) BS01 NAD 1.1.1.1 GO:0004022 ... P10807 10366509
    1692 1b14:B (2.4) BS01 NAD 1.1.1.1 GO:0004022 ... P10807 10366509
    1693 1b15:A (2.2) BS01 NAE 1.1.1.1 GO:0004022 ... P10807 10366509
    1694 1b15:B (2.2) BS01 NAE 1.1.1.1 GO:0004022 ... P10807 10366509
    1695 1b16:A (1.4) BS01 NAQ 1.1.1.1 GO:0004022 ... P10807 10366509
    1696 1b16:B (1.4) BS01 NAQ 1.1.1.1 GO:0004022 ... P10807 10366509
    1697 1b17:B (1.7) BS01 peptide ? GO:0005179 ... P01315 12657786
    1698 1b18:B (1.8) BS01 peptide ? GO:0005179 ... P01315 12657786
    1699 1b19:B (1.8) BS01 peptide ? GO:0005179 ... P01315 12657786
    1700 1b1g:A (-1.00) BS01 CA ? GO:0005499 ... P02633 9390401
    1701 1b1g:A (-1.00) BS02 CA ? GO:0005499 ... P02633 9390401
    1702 1b1h:A (1.8) BS01 peptide ? GO:0015031 ... P06202 10422831
    1703 1b1x:A (2.62) BS01 FE 3.4.21.- GO:0001503 ... O77811 10366507
    1704 1b1x:A (2.62) BS02 FE 3.4.21.- GO:0001503 ... O77811 10366507
    1705 1b1x:A (2.62) BS03 CO3 3.4.21.- GO:0001503 ... O77811 10366507
    1706 1b1x:A (2.62) BS04 CO3 3.4.21.- GO:0001503 ... O77811 10366507
    1707 1b23:P (2.6) BS01 rna ? GO:0003746 ... Q01698 10368282
    1708 1b23:P (2.6) BS02 CYS ? GO:0003746 ... Q01698 10368282
    1709 1b23:P (2.6) BS03 MG ? GO:0003746 ... Q01698 10368282
    1710 1b23:P (2.6) BS04 GNP ? GO:0003746 ... Q01698 10368282
    1711 1b2a:B (1.7) BS01 peptide ? GO:0005179 ... P01315 12657786
    1712 1b2b:B (1.8) BS01 peptide ? GO:0005179 ... P01315 12657786
    1713 1b2c:B (1.8) BS01 peptide ? GO:0005179 ... P01315 12657786
    1714 1b2d:B (1.7) BS01 peptide ? GO:0005179 ... P01315 12657786
    1715 1b2e:B (1.9) BS01 peptide ? GO:0005179 ... P01315 12657786
    1716 1b2f:B (1.9) BS01 peptide ? GO:0005179 ... P01315 12657786
    1717 1b2g:B (1.8) BS01 peptide ? GO:0005179 ... P01315 12657786
    1718 1b2h:A (1.9) BS01 peptide ? GO:0015031 ... P06202 10422831
    1719 1b2l:A (1.6) BS01 CA 1.1.1.1 GO:0004022 ... P10807 10366509
    1720 1b2l:A (1.6) BS02 NDC 1.1.1.1 GO:0004022 ... P10807 10366509
    1721 1b2l:A (1.6) BS03 CYH 1.1.1.1 GO:0004022 ... P10807 10366509
    1722 1b2m:A (2.0) BS01 rna 4.6.1.24 GO:0001411 ... P00651 10029539
    1723 1b2m:B (2.0) BS01 rna 4.6.1.24 GO:0001411 ... P00651 10029539
    1724 1b2m:B (2.0) BS02 rna 4.6.1.24 GO:0001411 ... P00651 10029539
    1725 1b2v:A (1.9) BS01 HEM ? GO:0005515 ... Q54450 10360351
    1726 1b2y:A (3.2) BS01 BGC 3.2.1.1 GO:0003824 ... P04746 10657258
    1727 1b2y:A (3.2) BS02 AC1 3.2.1.1 GO:0003824 ... P04746 10657258
    1728 1b2y:A (3.2) BS03 GLC 3.2.1.1 GO:0003824 ... P04746 10657258
    1729 1b2y:A (3.2) BS04 G6D 3.2.1.1 GO:0003824 ... P04746 10657258
    1730 1b2y:A (3.2) BS05 CA 3.2.1.1 GO:0003824 ... P04746 10657258
    1731 1b30:A (2.25) BS01 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    1732 1b30:A (2.25) BS02 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    1733 1b32:A (1.75) BS01 peptide ? GO:0015031 ... P06202 10438628
    1734 1b33:A (2.3) BS01 BLA ? GO:0009579 ... P00315 9990029
    1735 1b33:B (2.3) BS01 BLA ? GO:0009579 ... P00318 9990029
    1736 1b33:F (2.3) BS01 BLA ? GO:0009579 ... P00318 9990029
    1737 1b33:N (2.3) BS01 BLA ? GO:0009579 ... P20116 9990029
    1738 1b37:A (1.9) BS01 FAD 1.5.3.14
    1.5.3.15
    GO:0006598 ... O64411 10368296
    1739 1b37:B (1.9) BS01 FAD 1.5.3.14
    1.5.3.15
    GO:0006598 ... O64411 10368296
    1740 1b37:C (1.9) BS01 FAD 1.5.3.14
    1.5.3.15
    GO:0006598 ... O64411 10368296
    1741 1b38:A (2.0) BS01 MG 2.7.11.22 GO:0000082 ... P24941 10085115
    1742 1b38:A (2.0) BS02 ATP 2.7.11.22 GO:0000082 ... P24941 10085115 MOAD: Kd=0.254uM
    PDBbind: -logKd/Ki=6.60, Kd=0.254uM
    1743 1b39:A (2.1) BS01 MG 2.7.11.22 GO:0000082 ... P24941 10085115
    1744 1b39:A (2.1) BS02 ATP 2.7.11.22 GO:0000082 ... P24941 10085115 MOAD: Kd=0.12uM
    PDBbind: -logKd/Ki=6.92, Kd=0.120uM
    1745 1b3a:A (1.6) BS01 AOP ? GO:0002407 ... P13501 9889151
    1746 1b3a:B (1.6) BS01 AOP ? GO:0002407 ... P13501 9889151
    1747 1b3d:A (2.3) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10543949
    1748 1b3d:A (2.3) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10543949
    1749 1b3d:A (2.3) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    1750 1b3d:A (2.3) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    1751 1b3d:A (2.3) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    1752 1b3d:B (2.3) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10543949
    1753 1b3d:B (2.3) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10543949
    1754 1b3d:B (2.3) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    1755 1b3d:B (2.3) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    1756 1b3d:B (2.3) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    1757 1b3d:B (2.3) BS06 S27 3.4.24.17 GO:0004222 ... P08254 10543949 BindingDB: IC50=24nM
    1758 1b3e:A (2.5) BS01 FE ? GO:0005576 ... P02787 10029548
    1759 1b3e:A (2.5) BS02 CO3 ? GO:0005576 ... P02787 10029548
    1760 1b3f:A (1.8) BS01 peptide ? GO:0015031 ... P06202 10438628
    1761 1b3g:A (2.0) BS01 peptide ? GO:0015031 ... P06202 10438628
    1762 1b3h:A (2.0) BS01 peptide ? GO:0015031 ... P06202 10422831
    1763 1b3i:A (-1.00) BS01 CU1 1.10.99.1 GO:0005507 ... P50057 10213601
    1764 1b3l:A (2.0) BS01 peptide ? GO:0015031 ... P06202 10438628
    1765 1b3l:C (2.0) BS01 peptide ? GO:0015031 ... P06202 10438628
    1766 1b3n:A (2.65) BS01 CER 2.3.1.179 GO:0004315 ... P0AAI5 10037680
    1767 1b3o:A (2.9) BS01 CPR 1.1.1.205 GO:0000166 ... P12268 10097070
    1768 1b3o:A (2.9) BS02 SAE 1.1.1.205 GO:0000166 ... P12268 10097070
    1769 1b3o:B (2.9) BS01 CPR 1.1.1.205 GO:0000166 ... P12268 10097070
    1770 1b3o:B (2.9) BS02 SAE 1.1.1.205 GO:0000166 ... P12268 10097070
    1771 1b3r:A (2.8) BS01 NAD 3.13.2.1 GO:0001666 ... P10760 10387078
    1772 1b3r:A (2.8) BS02 NAD 3.13.2.1 GO:0001666 ... P10760 10387078
    1773 1b3r:B (2.8) BS01 NAD 3.13.2.1 GO:0001666 ... P10760 10387078
    1774 1b3r:B (2.8) BS02 NAD 3.13.2.1 GO:0001666 ... P10760 10387078
    1775 1b3r:C (2.8) BS01 NAD 3.13.2.1 GO:0001666 ... P10760 10387078
    1776 1b3r:C (2.8) BS02 NAD 3.13.2.1 GO:0001666 ... P10760 10387078
    1777 1b3r:D (2.8) BS01 NAD 3.13.2.1 GO:0001666 ... P10760 10387078
    1778 1b3r:D (2.8) BS02 NAD 3.13.2.1 GO:0001666 ... P10760 10387078
    1779 1b3t:A (2.2) BS01 dna 3.1.21.- GO:0003677 ... P03211 9878348
    1780 1b3t:A (2.2) BS02 dna 3.1.21.- GO:0003677 ... P03211 9878348
    1781 1b3t:B (2.2) BS01 dna 3.1.21.- GO:0003677 ... P03211 9878348
    1782 1b3t:B (2.2) BS02 dna 3.1.21.- GO:0003677 ... P03211 9878348
    1783 1b3v:A (2.4) BS01 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    1784 1b3v:A (2.4) BS02 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    1785 1b3v:A (2.4) BS03 XYS 3.2.1.8 GO:0004553 ... P56588 10029534
    1786 1b3v:A (2.4) BS04 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    1787 1b3w:A (2.6) BS01 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    1788 1b3w:A (2.6) BS02 XYS 3.2.1.8 GO:0004553 ... P56588 10029534
    1789 1b3w:A (2.6) BS03 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    1790 1b3x:A (2.2) BS01 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    1791 1b3x:A (2.2) BS02 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    1792 1b3x:A (2.2) BS03 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    1793 1b3y:A (2.45) BS01 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    1794 1b3y:A (2.45) BS02 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    1795 1b3y:A (2.45) BS03 XYS 3.2.1.8 GO:0004553 ... P56588 10029534
    1796 1b3z:A (2.3) BS01 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    1797 1b3z:A (2.3) BS02 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    1798 1b3z:A (2.3) BS03 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    1799 1b3z:A (2.3) BS04 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    1800 1b40:A (2.2) BS01 peptide ? GO:0015031 ... P06202 10438628

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218