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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    16801 1kat:V (-1.00) BS01 peptide ? GO:0008083 ... P15692 11866530
    16802 1kat:V (-1.00) BS02 peptide ? GO:0008083 ... P15692 11866530
    16803 1kat:W (-1.00) BS01 peptide ? GO:0008083 ... P15692 11866530
    16804 1kat:W (-1.00) BS02 peptide ? GO:0008083 ... P15692 11866530
    16805 1kb0:A (1.44) BS01 CA 1.1.9.1 GO:0005509 ... Q46444 11714714
    16806 1kb0:A (1.44) BS02 HEC 1.1.9.1 GO:0005509 ... Q46444 11714714
    16807 1kb0:A (1.44) BS03 TFB 1.1.9.1 GO:0005509 ... Q46444 11714714
    16808 1kb0:A (1.44) BS04 PQQ 1.1.9.1 GO:0005509 ... Q46444 11714714
    16809 1kb3:A (2.1) BS01 CA 3.2.1.1 GO:0003824 ... P04746 11772019
    16810 1kb9:C (2.3) BS01 HEM 7.1.1.8 GO:0005739 ... P00163 11726495
    16811 1kb9:C (2.3) BS02 HEM 7.1.1.8 GO:0005739 ... P00163 11726495
    16812 1kb9:C (2.3) BS03 SMA 7.1.1.8 GO:0005739 ... P00163 11726495
    16813 1kb9:C (2.3) BS04 UQ6 7.1.1.8 GO:0005739 ... P00163 11726495
    16814 1kb9:C (2.3) BS05 PIE 7.1.1.8 GO:0005739 ... P00163 11726495
    16815 1kb9:C (2.3) BS06 CDL 7.1.1.8 GO:0005739 ... P00163 11726495
    16816 1kb9:E (2.3) BS01 PIE 7.1.1.8 GO:0008121 ... P08067 11726495
    16817 1kb9:E (2.3) BS02 FES 7.1.1.8 GO:0008121 ... P08067 11726495
    16818 1kbb:A (1.9) BS01 CA 3.2.1.1 GO:0003824 ... P04746 11914097
    16819 1kbc:A (1.8) BS01 CA 3.4.24.34 GO:0004222 ... P22894 9249047
    16820 1kbc:A (1.8) BS02 CA 3.4.24.34 GO:0004222 ... P22894 9249047
    16821 1kbc:A (1.8) BS03 ZN 3.4.24.34 GO:0004222 ... P22894 9249047
    16822 1kbc:A (1.8) BS04 ZN 3.4.24.34 GO:0004222 ... P22894 9249047
    16823 1kbc:A (1.8) BS05 HLE 3.4.24.34 GO:0004222 ... P22894 9249047
    16824 1kbc:A (1.8) BS06 RIN 3.4.24.34 GO:0004222 ... P22894 9249047
    16825 1kbc:B (1.8) BS01 CA 3.4.24.34 GO:0004222 ... P22894 9249047
    16826 1kbc:B (1.8) BS02 CA 3.4.24.34 GO:0004222 ... P22894 9249047
    16827 1kbc:B (1.8) BS03 ZN 3.4.24.34 GO:0004222 ... P22894 9249047
    16828 1kbc:B (1.8) BS04 ZN 3.4.24.34 GO:0004222 ... P22894 9249047
    16829 1kbc:B (1.8) BS05 HLE 3.4.24.34 GO:0004222 ... P22894 9249047
    16830 1kbc:B (1.8) BS06 RIN 3.4.24.34 GO:0004222 ... P22894 9249047
    16831 1kbk:A (1.9) BS01 CA 3.2.1.1 GO:0003824 ... P04746 11914097
    16832 1kbn:A (2.0) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 N/A
    16833 1kbn:B (2.0) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 N/A
    16834 1kbo:A (2.3) BS01 340 1.6.5.2 GO:0000209 ... P15559 11735396
    16835 1kbo:A (2.3) BS02 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    16836 1kbo:A (2.3) BS03 340 1.6.5.2 GO:0000209 ... P15559 11735396
    16837 1kbo:A (2.3) BS04 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    16838 1kbo:B (2.3) BS01 340 1.6.5.2 GO:0000209 ... P15559 11735396
    16839 1kbo:B (2.3) BS02 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    16840 1kbo:B (2.3) BS03 340 1.6.5.2 GO:0000209 ... P15559 11735396
    16841 1kbo:B (2.3) BS04 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    16842 1kbo:C (2.3) BS01 340 1.6.5.2 GO:0000209 ... P15559 11735396
    16843 1kbo:C (2.3) BS02 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    16844 1kbo:C (2.3) BS03 340 1.6.5.2 GO:0000209 ... P15559 11735396
    16845 1kbo:C (2.3) BS04 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    16846 1kbo:D (2.3) BS01 340 1.6.5.2 GO:0000209 ... P15559 11735396
    16847 1kbo:D (2.3) BS02 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    16848 1kbo:D (2.3) BS03 340 1.6.5.2 GO:0000209 ... P15559 11735396
    16849 1kbo:D (2.3) BS04 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    16850 1kbp:A (2.65) BS01 FE 3.1.3.2 GO:0003993 ... P80366 8683579
    16851 1kbp:A (2.65) BS02 ZN 3.1.3.2 GO:0003993 ... P80366 8683579
    16852 1kbp:B (2.65) BS01 FE 3.1.3.2 GO:0003993 ... P80366 8683579
    16853 1kbp:B (2.65) BS02 ZN 3.1.3.2 GO:0003993 ... P80366 8683579
    16854 1kbp:C (2.65) BS01 FE 3.1.3.2 GO:0003993 ... P80366 8683579
    16855 1kbp:C (2.65) BS02 ZN 3.1.3.2 GO:0003993 ... P80366 8683579
    16856 1kbp:D (2.65) BS01 FE 3.1.3.2 GO:0003993 ... P80366 8683579
    16857 1kbp:D (2.65) BS02 ZN 3.1.3.2 GO:0003993 ... P80366 8683579
    16858 1kbq:A (1.8) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    16859 1kbq:A (1.8) BS02 936 1.6.5.2 GO:0000209 ... P15559 11735396 MOAD: Ki=0.45uM
    BindingDB: Ki=450nM
    16860 1kbq:A (1.8) BS03 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    16861 1kbq:A (1.8) BS04 936 1.6.5.2 GO:0000209 ... P15559 11735396 MOAD: Ki=0.45uM
    BindingDB: Ki=450nM
    16862 1kbq:B (1.8) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    16863 1kbq:B (1.8) BS02 936 1.6.5.2 GO:0000209 ... P15559 11735396 MOAD: Ki=0.45uM
    BindingDB: Ki=450nM
    16864 1kbq:B (1.8) BS03 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    16865 1kbq:B (1.8) BS04 936 1.6.5.2 GO:0000209 ... P15559 11735396 MOAD: Ki=0.45uM
    BindingDB: Ki=450nM
    16866 1kbq:C (1.8) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    16867 1kbq:C (1.8) BS02 936 1.6.5.2 GO:0000209 ... P15559 11735396 MOAD: Ki=0.45uM
    BindingDB: Ki=450nM
    16868 1kbq:C (1.8) BS03 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    16869 1kbq:C (1.8) BS04 936 1.6.5.2 GO:0000209 ... P15559 11735396 MOAD: Ki=0.45uM
    BindingDB: Ki=450nM
    16870 1kbq:D (1.8) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    16871 1kbq:D (1.8) BS02 936 1.6.5.2 GO:0000209 ... P15559 11735396 MOAD: Ki=0.45uM
    BindingDB: Ki=450nM
    16872 1kbq:D (1.8) BS03 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    16873 1kbq:D (1.8) BS04 936 1.6.5.2 GO:0000209 ... P15559 11735396 MOAD: Ki=0.45uM
    BindingDB: Ki=450nM
    16874 1kby:L (2.5) BS01 BCL ? GO:0009772 ... P0C0Y8 16228547
    16875 1kby:L (2.5) BS02 BCL ? GO:0009772 ... P0C0Y8 16228547
    16876 1kby:L (2.5) BS03 BCL ? GO:0009772 ... P0C0Y8 16228547
    16877 1kby:L (2.5) BS04 BPH ? GO:0009772 ... P0C0Y8 16228547
    16878 1kby:L (2.5) BS05 BPH ? GO:0009772 ... P0C0Y8 16228547
    16879 1kby:L (2.5) BS06 FE ? GO:0009772 ... P0C0Y8 16228547
    16880 1kby:L (2.5) BS07 U10 ? GO:0009772 ... P0C0Y8 16228547
    16881 1kby:M (2.5) BS01 BCL ? GO:0009772 ... P0C0Y9 16228547
    16882 1kby:M (2.5) BS02 BCL ? GO:0009772 ... P0C0Y9 16228547
    16883 1kby:M (2.5) BS03 BPH ? GO:0009772 ... P0C0Y9 16228547
    16884 1kby:M (2.5) BS04 BPH ? GO:0009772 ... P0C0Y9 16228547
    16885 1kby:M (2.5) BS05 FE ? GO:0009772 ... P0C0Y9 16228547
    16886 1kby:M (2.5) BS06 BPH ? GO:0009772 ... P0C0Y9 16228547
    16887 1kby:M (2.5) BS07 U10 ? GO:0009772 ... P0C0Y9 16228547
    16888 1kby:M (2.5) BS08 SPO ? GO:0009772 ... P0C0Y9 16228547
    16889 1kc1:A (2.6) BS01 NDP 1.1.1.133 GO:0005829 ... P26392 12057193
    16890 1kc3:A (2.7) BS01 NDP 1.1.1.133 GO:0005829 ... P26392 12057193
    16891 1kc3:A (2.7) BS02 TRH 1.1.1.133 GO:0005829 ... P26392 12057193
    16892 1kc4:A (-1.00) BS01 peptide ? GO:0005515 ... P60615 11790782
    16893 1kc5:L (2.5) BS01 peptide ? GO:0005576 ... P01837 11859128
    16894 1kc8:1 (3.01) BS01 rna ? GO:0003735 ... P60619 12860128
    16895 1kc8:2 (3.01) BS01 rna ? GO:0003723 ... P32410 12860128
    16896 1kc8:3 (3.01) BS01 rna ? GO:0003735 ... P22452 12860128
    16897 1kc8:4 (3.01) BS01 rna ? GO:0000049 ... P32411 12860128
    16898 1kc8:4 (3.01) BS02 MG ? GO:0000049 ... P32411 12860128
    16899 1kc8:C (3.01) BS01 rna ? GO:0002181 ... P20276 12860128
    16900 1kc8:C (3.01) BS02 MG ? GO:0002181 ... P20276 12860128
    16901 1kc8:D (3.01) BS01 rna ? GO:0003723 ... P20279 12860128
    16902 1kc8:E (3.01) BS01 rna ? GO:0003723 ... P12735 12860128
    16903 1kc8:F (3.01) BS01 rna ? GO:0000049 ... P14124 12860128
    16904 1kc8:F (3.01) BS02 rna ? GO:0000049 ... P14124 12860128
    16905 1kc8:G (3.01) BS01 rna ? GO:0002181 ... P14135 12860128
    16906 1kc8:H (3.01) BS01 rna ? GO:0001682 ... P12743 12860128
    16907 1kc8:J (3.01) BS01 rna ? GO:0000027 ... P60617 12860128
    16908 1kc8:K (3.01) BS01 rna ? GO:0003729 ... P29198 12860128
    16909 1kc8:L (3.01) BS01 rna ? GO:0003735 ... P22450 12860128
    16910 1kc8:M (3.01) BS01 rna ? GO:0003735 ... P12737 12860128
    16911 1kc8:N (3.01) BS01 rna ? GO:0002181 ... P60618 12860128
    16912 1kc8:O (3.01) BS01 rna ? GO:0000027 ... P14123 12860128
    16913 1kc8:O (3.01) BS02 rna ? GO:0000027 ... P14123 12860128
    16914 1kc8:P (3.01) BS01 rna ? GO:0003723 ... P12733 12860128
    16915 1kc8:Q (3.01) BS01 rna ? GO:0003723 ... P14119 12860128
    16916 1kc8:R (3.01) BS01 rna ? GO:0003735 ... P12734 12860128
    16917 1kc8:R (3.01) BS02 rna ? GO:0003735 ... P12734 12860128
    16918 1kc8:S (3.01) BS01 rna ? GO:0002181 ... P10970 12860128
    16919 1kc8:T (3.01) BS01 rna ? GO:0000027 ... P12732 12860128
    16920 1kc8:U (3.01) BS01 rna ? GO:0002181 ... P10972 12860128
    16921 1kc8:U (3.01) BS02 MG ? GO:0002181 ... P10972 12860128
    16922 1kc8:V (3.01) BS01 rna ? GO:0003735 ... P14116 12860128
    16923 1kc8:W (3.01) BS01 rna ? GO:0003735 ... P10971 12860128
    16924 1kc8:X (3.01) BS01 rna ? GO:0000463 ... P14121 12860128
    16925 1kc8:X (3.01) BS02 rna ? GO:0000463 ... P14121 12860128
    16926 1kc8:Y (3.01) BS01 rna ? GO:0002181 ... P18138 12860128
    16927 1kc8:Z (3.01) BS01 rna ? GO:0000166 ... P12736 12860128
    16928 1kc8:Z (3.01) BS02 MG ? GO:0000166 ... P12736 12860128
    16929 1kcb:A (1.65) BS01 CU 1.7.2.1 GO:0005507 ... P25006 12615072
    16930 1kcb:A (1.65) BS02 CU 1.7.2.1 GO:0005507 ... P25006 12615072
    16931 1kce:A (2.0) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 8973201
    16932 1kce:A (2.0) BS02 UMP 2.1.1.45 GO:0000287 ... P0A884 8973201
    16933 1kce:B (2.0) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 8973201
    16934 1kce:B (2.0) BS02 UMP 2.1.1.45 GO:0000287 ... P0A884 8973201
    16935 1kck:A (2.43) BS01 G6D 2.4.1.19 GO:0003824 ... P43379 11696539
    16936 1kck:A (2.43) BS02 GLC 2.4.1.19 GO:0003824 ... P43379 11696539
    16937 1kck:A (2.43) BS03 GLC 2.4.1.19 GO:0003824 ... P43379 11696539
    16938 1kck:A (2.43) BS04 GLC 2.4.1.19 GO:0003824 ... P43379 11696539
    16939 1kck:A (2.43) BS05 GLC 2.4.1.19 GO:0003824 ... P43379 11696539
    16940 1kck:A (2.43) BS06 GLC 2.4.1.19 GO:0003824 ... P43379 11696539
    16941 1kck:A (2.43) BS07 GLC 2.4.1.19 GO:0003824 ... P43379 11696539
    16942 1kck:A (2.43) BS08 ADH 2.4.1.19 GO:0003824 ... P43379 11696539
    16943 1kck:A (2.43) BS09 GLC 2.4.1.19 GO:0003824 ... P43379 11696539
    16944 1kck:A (2.43) BS10 CA 2.4.1.19 GO:0003824 ... P43379 11696539
    16945 1kck:A (2.43) BS11 CA 2.4.1.19 GO:0003824 ... P43379 11696539
    16946 1kcl:A (1.94) BS01 GLC 2.4.1.19 GO:0003824 ... P43379 11696539
    16947 1kcl:A (1.94) BS02 GLC 2.4.1.19 GO:0003824 ... P43379 11696539
    16948 1kcl:A (1.94) BS03 GLC 2.4.1.19 GO:0003824 ... P43379 11696539
    16949 1kcl:A (1.94) BS04 BGC 2.4.1.19 GO:0003824 ... P43379 11696539
    16950 1kcl:A (1.94) BS05 GLC 2.4.1.19 GO:0003824 ... P43379 11696539
    16951 1kcl:A (1.94) BS06 GLC 2.4.1.19 GO:0003824 ... P43379 11696539
    16952 1kcl:A (1.94) BS07 GLC 2.4.1.19 GO:0003824 ... P43379 11696539
    16953 1kcl:A (1.94) BS08 GLC 2.4.1.19 GO:0003824 ... P43379 11696539
    16954 1kcl:A (1.94) BS09 GLC 2.4.1.19 GO:0003824 ... P43379 11696539
    16955 1kcl:A (1.94) BS10 GLC 2.4.1.19 GO:0003824 ... P43379 11696539
    16956 1kcl:A (1.94) BS11 CA 2.4.1.19 GO:0003824 ... P43379 11696539
    16957 1kcl:A (1.94) BS12 CA 2.4.1.19 GO:0003824 ... P43379 11696539
    16958 1kcl:A (1.94) BS13 GLC 2.4.1.19 GO:0003824 ... P43379 11696539
    16959 1kcr:L (2.9) BS01 peptide ? GO:0005576 ... P01837 11120821
    16960 1kcs:H (2.5) BS01 peptide ? GO:0002250 ... P18532 11859128
    16961 1kcs:L (2.5) BS01 peptide ? GO:0005576 ... P01837 11859128
    16962 1kcw:A (3.0) BS01 CU 1.11.1.27
    1.11.1.9
    1.16.3.1
    1.16.3.4
    GO:0004322 ... P00450 N/A
    16963 1kcw:A (3.0) BS02 CU 1.11.1.27
    1.11.1.9
    1.16.3.1
    1.16.3.4
    GO:0004322 ... P00450 N/A
    16964 1kcw:A (3.0) BS03 CU 1.11.1.27
    1.11.1.9
    1.16.3.1
    1.16.3.4
    GO:0004322 ... P00450 N/A
    16965 1kcw:A (3.0) BS04 CU 1.11.1.27
    1.11.1.9
    1.16.3.1
    1.16.3.4
    GO:0004322 ... P00450 N/A
    16966 1kcw:A (3.0) BS05 CU 1.11.1.27
    1.11.1.9
    1.16.3.1
    1.16.3.4
    GO:0004322 ... P00450 N/A
    16967 1kcw:A (3.0) BS06 CU 1.11.1.27
    1.11.1.9
    1.16.3.1
    1.16.3.4
    GO:0004322 ... P00450 N/A
    16968 1kcw:A (3.0) BS07 CU 1.11.1.27
    1.11.1.9
    1.16.3.1
    1.16.3.4
    GO:0004322 ... P00450 N/A
    16969 1kcw:A (3.0) BS08 CU 1.11.1.27
    1.11.1.9
    1.16.3.1
    1.16.3.4
    GO:0004322 ... P00450 N/A
    16970 1kcw:A (3.0) BS09 O 1.11.1.27
    1.11.1.9
    1.16.3.1
    1.16.3.4
    GO:0004322 ... P00450 N/A
    16971 1kcw:A (3.0) BS10 O 1.11.1.27
    1.11.1.9
    1.16.3.1
    1.16.3.4
    GO:0004322 ... P00450 N/A
    16972 1kd1:1 (3.0) BS01 rna ? GO:0003735 ... P60619 12150912
    16973 1kd1:2 (3.0) BS01 rna ? GO:0003723 ... P32410 12150912
    16974 1kd1:3 (3.0) BS01 rna ? GO:0003735 ... P22452 12150912
    16975 1kd1:4 (3.0) BS01 rna ? GO:0000049 ... P32411 12150912
    16976 1kd1:4 (3.0) BS02 MG ? GO:0000049 ... P32411 12150912
    16977 1kd1:C (3.0) BS01 rna ? GO:0002181 ... P20276 12150912
    16978 1kd1:C (3.0) BS02 MG ? GO:0002181 ... P20276 12150912
    16979 1kd1:D (3.0) BS01 rna ? GO:0003723 ... P20279 12150912
    16980 1kd1:E (3.0) BS01 rna ? GO:0003723 ... P12735 12150912
    16981 1kd1:F (3.0) BS01 rna ? GO:0000049 ... P14124 12150912
    16982 1kd1:F (3.0) BS02 rna ? GO:0000049 ... P14124 12150912
    16983 1kd1:G (3.0) BS01 rna ? GO:0002181 ... P14135 12150912
    16984 1kd1:H (3.0) BS01 rna ? GO:0001682 ... P12743 12150912
    16985 1kd1:J (3.0) BS01 rna ? GO:0000027 ... P60617 12150912
    16986 1kd1:K (3.0) BS01 rna ? GO:0003729 ... P29198 12150912
    16987 1kd1:L (3.0) BS01 rna ? GO:0003735 ... P22450 12150912
    16988 1kd1:M (3.0) BS01 rna ? GO:0003735 ... P12737 12150912
    16989 1kd1:N (3.0) BS01 rna ? GO:0002181 ... P60618 12150912
    16990 1kd1:O (3.0) BS01 rna ? GO:0000027 ... P14123 12150912
    16991 1kd1:O (3.0) BS02 rna ? GO:0000027 ... P14123 12150912
    16992 1kd1:P (3.0) BS01 rna ? GO:0003723 ... P12733 12150912
    16993 1kd1:Q (3.0) BS01 rna ? GO:0003723 ... P14119 12150912
    16994 1kd1:R (3.0) BS01 rna ? GO:0003735 ... P12734 12150912
    16995 1kd1:R (3.0) BS02 rna ? GO:0003735 ... P12734 12150912
    16996 1kd1:S (3.0) BS01 rna ? GO:0002181 ... P10970 12150912
    16997 1kd1:T (3.0) BS01 rna ? GO:0000027 ... P12732 12150912
    16998 1kd1:U (3.0) BS01 rna ? GO:0002181 ... P10972 12150912
    16999 1kd1:U (3.0) BS02 MG ? GO:0002181 ... P10972 12150912
    17000 1kd1:V (3.0) BS01 rna ? GO:0003735 ... P14116 12150912

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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