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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    592201 8y39:L (3.6) BS01 rna N/A GO:0003735 ... Q7A087 38992047
    592202 8y39:M (3.6) BS01 rna N/A GO:0005737 ... Q7A085 38992047
    592203 8y39:M (3.6) BS02 rna N/A GO:0005737 ... Q7A085 38992047
    592204 8y39:N (3.6) BS01 rna N/A GO:0003735 ... Q8NX05 38992047
    592205 8y39:O (3.6) BS01 rna N/A GO:0000027 ... P66109 38992047
    592206 8y39:P (3.6) BS01 rna N/A GO:0003735 ... Q7A0Q2 38992047
    592207 8y39:Q (3.6) BS01 rna N/A GO:0003735 ... Q7A079 38992047
    592208 8y39:R (3.6) BS01 rna N/A GO:0000027 ... Q7A078 38992047
    592209 8y39:S (3.6) BS01 rna N/A GO:0005840 ... P60736 38992047
    592210 8y39:V (3.6) BS01 rna N/A GO:0005840 ... P66154 38992047
    592211 8y39:W (3.6) BS01 rna N/A GO:0005840 ... P66174 38992047
    592212 8y39:X (3.6) BS01 rna N/A GO:0005840 ... P0A0G1 38992047
    592213 8y39:X (3.6) BS02 rna N/A GO:0005840 ... P0A0G1 38992047
    592214 8y39:b (3.6) BS01 rna N/A GO:0003735 ... A0A2X2M020 38992047
    592215 8y39:c (3.6) BS01 rna N/A GO:0003729 ... P66554 38992047
    592216 8y39:d (3.6) BS01 rna N/A GO:0003735 ... P66564 38992047
    592217 8y39:e (3.6) BS01 rna N/A GO:0005737 ... P66580 38992047
    592218 8y39:f (3.6) BS01 rna N/A GO:0003735 ... P66596 38992047
    592219 8y39:g (3.6) BS01 rna N/A GO:0000028 ... P66617 38992047
    592220 8y39:h (3.6) BS01 rna N/A GO:0003735 ... P66631 38992047
    592221 8y39:i (3.6) BS01 rna N/A GO:0003723 ... P66647 38992047
    592222 8y39:j (3.6) BS01 rna N/A GO:0000049 ... P66335 38992047
    592223 8y39:k (3.6) BS01 rna N/A GO:0005840 ... P66358 38992047
    592224 8y39:m (3.6) BS01 rna N/A GO:0000049 ... P66389 38992047
    592225 8y39:n (3.6) BS01 rna N/A GO:0003735 ... P66413 38992047
    592226 8y39:o (3.6) BS01 rna N/A GO:0005737 ... Q7A116 38992047
    592227 8y39:p (3.6) BS01 rna N/A GO:0003735 ... P66441 38992047
    592228 8y39:q (3.6) BS01 rna N/A GO:0003735 ... Q8NVB4 38992047
    592229 8y39:r (3.6) BS01 rna N/A GO:0003735 ... P66469 38992047
    592230 8y39:t (3.6) BS01 rna N/A GO:0005829 ... Q7A0R9 38992047
    592231 8y3x:A (3.11) BS01 ATP ? GO:0000917 ... P0A9R7 38814940
    592232 8y3x:A (3.11) BS02 ATP ? GO:0000917 ... P0A9R7 38814940
    592233 8y3x:B (3.11) BS01 ATP ? GO:0000917 ... P0A9R7 38814940
    592234 8y3x:B (3.11) BS02 ATP ? GO:0000917 ... P0A9R7 38814940
    592235 8y65:A (3.51) BS01 URC N/A GO:0005351 ... Q9NRM0 38866775
    592236 8y66:A (3.28) BS01 AGI N/A GO:0005351 ... Q9NRM0 38866775
    592237 8y6b:D (3.49) BS01 CA ? GO:0005102 ... O95970 N/A
    592238 8y6b:E (3.49) BS01 CA ? GO:0005102 ... O95970 N/A
    592239 8y6b:F (3.49) BS01 CA ? GO:0005102 ... O95970 N/A
    592240 8y6h:A (2.49) BS01 R0Z 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    592241 8y6h:A (2.49) BS02 R0Z 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    592242 8y6h:A (2.49) BS03 R0Z 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    592243 8y6i:A (2.54) BS01 CLR 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    592244 8y6i:A (2.54) BS02 CLR 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    592245 8y6i:A (2.54) BS03 CLR 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    592246 8y6i:A (2.54) BS04 CLR 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    592247 8y6i:A (2.54) BS05 CLR 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    592248 8y6i:A (2.54) BS06 CLR 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    592249 8y6i:A (2.54) BS07 CLR 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    592250 8y6i:A (2.54) BS08 R0Z 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    592251 8y6i:A (2.54) BS09 R0Z 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    592252 8y6i:A (2.54) BS10 R0Z 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    592253 8y6o:C (3.38) BS01 rna ? GO:0000244 ... Q6P2Q9 38484052
    592254 8y6o:C (3.38) BS02 rna ? GO:0000244 ... Q6P2Q9 38484052
    592255 8y6o:C (3.38) BS03 IHP ? GO:0000244 ... Q6P2Q9 38484052
    592256 8y6o:D (3.38) BS01 GTP ? GO:0000398 ... Q15029 38484052
    592257 8y6o:F (3.38) BS01 rna ? GO:0000375 ... Q96DI7 38484052
    592258 8y6o:G (3.38) BS01 rna ? GO:0000244 ... O94906 38484052
    592259 8y6o:G (3.38) BS02 rna ? GO:0000244 ... O94906 38484052
    592260 8y6o:I (3.38) BS01 rna 3.6.4.13 GO:0000354 ... Q9BUQ8 38484052
    592261 8y6o:I (3.38) BS02 rna 3.6.4.13 GO:0000354 ... Q9BUQ8 38484052
    592262 8y6o:L (3.38) BS01 rna ? GO:0000244 ... Q8WWY3 38484052
    592263 8y6o:L (3.38) BS02 rna ? GO:0000244 ... Q8WWY3 38484052
    592264 8y6o:N (3.38) BS01 rna ? GO:0000244 ... O43395 38484052
    592265 8y6o:N (3.38) BS02 rna ? GO:0000244 ... O43395 38484052
    592266 8y6o:O (3.38) BS01 rna ? GO:0000398 ... P55769 38484052
    592267 8y6o:R (3.38) BS01 rna ? GO:0000398 ... Q86UT8 38484052
    592268 8y6o:R (3.38) BS02 rna ? GO:0000398 ... Q86UT8 38484052
    592269 8y6o:R (3.38) BS03 ZN ? GO:0000398 ... Q86UT8 38484052
    592270 8y6o:R (3.38) BS04 ZN ? GO:0000398 ... Q86UT8 38484052
    592271 8y6o:U (3.38) BS01 ZN 3.4.19.12 GO:0000245 ... Q53GS9 38484052
    592272 8y6o:V (3.38) BS01 ZN ? GO:0005515 ... Q9UDW3 38484052
    592273 8y6o:V (3.38) BS02 ZN ? GO:0005515 ... Q9UDW3 38484052
    592274 8y6o:W (3.38) BS01 rna ? GO:0000398 ... Q16560 38484052
    592275 8y6o:W (3.38) BS02 rna ? GO:0000398 ... Q16560 38484052
    592276 8y6o:X (3.38) BS01 rna ? GO:0000398 ... Q9BV90 38484052
    592277 8y6o:X (3.38) BS02 rna ? GO:0000398 ... Q9BV90 38484052
    592278 8y6o:Y (3.38) BS01 rna ? GO:0005515 ... Q6IEG0 38484052
    592279 8y6o:Y (3.38) BS02 rna ? GO:0005515 ... Q6IEG0 38484052
    592280 8y6o:Y (3.38) BS03 ZN ? GO:0005515 ... Q6IEG0 38484052
    592281 8y6o:Z (3.38) BS01 rna ? GO:0005634 ... Q8N8D1 38484052
    592282 8y6o:a (3.38) BS01 rna ? GO:0000387 ... P14678 38484052
    592283 8y6o:b (3.38) BS01 rna ? GO:0000243 ... P62314 38484052
    592284 8y6o:c (3.38) BS01 rna ? GO:0000245 ... P62316 38484052
    592285 8y6o:d (3.38) BS01 rna ? GO:0000243 ... P62318 38484052
    592286 8y6o:e (3.38) BS01 rna ? GO:0000245 ... P62304 38484052
    592287 8y6o:f (3.38) BS01 rna ? GO:0000387 ... P62306 38484052
    592288 8y6o:g (3.38) BS01 rna ? GO:0000245 ... P62308 38484052
    592289 8y6o:h (3.38) BS01 rna ? GO:0000387 ... P14678 38484052
    592290 8y6o:i (3.38) BS01 rna ? GO:0000243 ... P62314 38484052
    592291 8y6o:j (3.38) BS01 rna ? GO:0000245 ... P62316 38484052
    592292 8y6o:k (3.38) BS01 rna ? GO:0000243 ... P62318 38484052
    592293 8y6o:l (3.38) BS01 rna ? GO:0000245 ... P62304 38484052
    592294 8y6o:m (3.38) BS01 rna ? GO:0000387 ... P62306 38484052
    592295 8y6o:n (3.38) BS01 rna ? GO:0000245 ... P62308 38484052
    592296 8y6o:o (3.38) BS01 rna ? GO:0000387 ... P14678 38484052
    592297 8y6o:p (3.38) BS01 rna ? GO:0000243 ... P62314 38484052
    592298 8y6o:q (3.38) BS01 rna ? GO:0000245 ... P62316 38484052
    592299 8y6o:r (3.38) BS01 rna ? GO:0000243 ... P62318 38484052
    592300 8y6o:s (3.38) BS01 rna ? GO:0000245 ... P62304 38484052
    592301 8y6o:t (3.38) BS01 rna ? GO:0000387 ... P62306 38484052
    592302 8y6o:u (3.38) BS01 rna ? GO:0000245 ... P62308 38484052
    592303 8y6u:C (3.97) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 38039839
    592304 8y6u:C (3.97) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 38039839
    592305 8y6u:D (3.97) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 38039839
    592306 8y6u:D (3.97) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 38039839
    592307 8y6u:F (3.97) BS01 dna ? GO:0003677 ... Q0P6L9 38039839
    592308 8y6u:F (3.97) BS02 dna ? GO:0003677 ... Q0P6L9 38039839
    592309 8y6u:H (3.97) BS01 dna ? GO:0003677 ... P0A9F6 38039839
    592310 8y6u:H (3.97) BS02 dna ? GO:0003677 ... P0A9F6 38039839
    592311 8y6u:I (3.97) BS01 dna 2.7.7.6 GO:0000345 ... P0A7Z4 38039839
    592312 8y6u:I (3.97) BS02 dna 2.7.7.6 GO:0000345 ... P0A7Z4 38039839
    592313 8y6u:J (3.97) BS01 dna ? GO:0003677 ... P0A9F6 38039839
    592314 8y6u:J (3.97) BS02 dna ? GO:0003677 ... P0A9F6 38039839
    592315 8y7e:1 (4.66) BS01 rna ? GO:0000245 ... O75533 38484052
    592316 8y7e:1 (4.66) BS02 rna ? GO:0000245 ... O75533 38484052
    592317 8y7e:2 (4.66) BS01 rna ? GO:0000398 ... Q13435 38484052
    592318 8y7e:6 (4.66) BS01 rna ? GO:0000398 ... Q7RTV0 38484052
    592319 8y7e:6 (4.66) BS02 rna ? GO:0000398 ... Q7RTV0 38484052
    592320 8y7e:6 (4.66) BS03 ZN ? GO:0000398 ... Q7RTV0 38484052
    592321 8y7e:6 (4.66) BS04 ZN ? GO:0000398 ... Q7RTV0 38484052
    592322 8y7e:6 (4.66) BS05 ZN ? GO:0000398 ... Q7RTV0 38484052
    592323 8y7e:h (4.66) BS01 rna ? GO:0000243 ... P62318 38484052
    592324 8y7e:i (4.66) BS01 rna ? GO:0000387 ... P14678 38484052
    592325 8y7e:j (4.66) BS01 rna ? GO:0000243 ... P62314 38484052
    592326 8y7e:k (4.66) BS01 rna ? GO:0000245 ... P62316 38484052
    592327 8y7e:l (4.66) BS01 rna ? GO:0000245 ... P62304 38484052
    592328 8y7e:m (4.66) BS01 rna ? GO:0000387 ... P62306 38484052
    592329 8y7e:n (4.66) BS01 rna ? GO:0000245 ... P62308 38484052
    592330 8y7e:v (4.66) BS01 rna ? GO:0000380 ... Q9BWG6 38484052
    592331 8y7e:v (4.66) BS02 ZN ? GO:0000380 ... Q9BWG6 38484052
    592332 8y7y:A (3.24) BS01 MJJ N/A GO:0016020 ... Q5MQD0 38964329
    592333 8y81:B (2.89) BS01 Y01 N/A GO:0005768 ... P13386 39169187
    592334 8y84:B (2.98) BS01 Y01 N/A GO:0005768 ... P13386 39169187
    592335 8y85:A (2.73) BS01 BCT N/A GO:0005452 ... P48751 39033175
    592336 8y85:A (2.73) BS02 4KU N/A GO:0005452 ... P48751 39033175
    592337 8y85:B (2.73) BS01 4KU N/A GO:0005452 ... P48751 39033175
    592338 8y86:A (2.75) BS01 BCT N/A GO:0005452 ... P48751 39033175
    592339 8y8b:A (3.01) BS01 MJJ N/A GO:0016020 ... Q0ZME7 38964329
    592340 8y8j:A (3.57) BS01 MJJ N/A GO:0016020 ... Q0ZME7 38964329
    592341 8y8z:A (3.29) BS01 A1LX3 ? GO:0003779 ... P23975 38750358
    592342 8y8z:E (3.29) BS01 A1LX3 ? GO:0003779 ... P23975 38750358
    592343 8y90:A (3.15) BS01 A1LX6 ? GO:0003779 ... P23975 38750358
    592344 8y91:A (3.13) BS01 A1LX5 ? GO:0003779 ... P23975 38750358
    592345 8y91:D (3.13) BS01 A1LX5 ? GO:0003779 ... P23975 38750358
    592346 8y92:A (3.29) BS01 A1LX4 ? GO:0003779 ... P23975 38750358
    592347 8y92:B (3.29) BS01 A1LX4 ? GO:0003779 ... P23975 38750358
    592348 8y93:A (3.0) BS01 TP0 ? GO:0003779 ... P23975 38750358
    592349 8y95:A (3.24) BS01 E5E ? GO:0003779 ... P23975 38750358
    592350 8y95:D (3.24) BS01 E5E ? GO:0003779 ... P23975 38750358
    592351 8y9v:C (1.9) BS01 peptide 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004252 ... Q32ZE1 N/A
    592352 8ybe:A (2.3) BS01 GLC ? GO:0005515 ... P0AEX9 N/A
    592353 8ybe:A (2.3) BS02 GLC ? GO:0005515 ... P0AEX9 N/A
    592354 8ybj:A (2.38) BS01 dna N/A GO:0000786 ... P68431 38972377
    592355 8ybj:A (2.38) BS02 dna N/A GO:0000786 ... P68431 38972377
    592356 8ybj:B (2.38) BS01 dna N/A GO:0000781 ... P62805 38972377
    592357 8ybj:B (2.38) BS02 dna N/A GO:0000781 ... P62805 38972377
    592358 8ybj:C (2.38) BS01 dna N/A GO:0000786 ... P04908 38972377
    592359 8ybj:C (2.38) BS02 dna N/A GO:0000786 ... P04908 38972377
    592360 8ybj:D (2.38) BS01 dna N/A GO:0000786 ... P06899 38972377
    592361 8ybj:D (2.38) BS02 dna N/A GO:0000786 ... P06899 38972377
    592362 8ybj:E (2.38) BS01 dna N/A GO:0000786 ... P68431 38972377
    592363 8ybj:E (2.38) BS02 dna N/A GO:0000786 ... P68431 38972377
    592364 8ybj:F (2.38) BS01 dna N/A GO:0000781 ... P62805 38972377
    592365 8ybj:F (2.38) BS02 dna N/A GO:0000781 ... P62805 38972377
    592366 8ybj:G (2.38) BS01 dna N/A GO:0000786 ... P04908 38972377
    592367 8ybj:G (2.38) BS02 dna N/A GO:0000786 ... P04908 38972377
    592368 8ybj:H (2.38) BS01 dna N/A GO:0000786 ... P06899 38972377
    592369 8ybj:H (2.38) BS02 dna N/A GO:0000786 ... P06899 38972377
    592370 8ybk:A (2.69) BS01 dna N/A GO:0000786 ... P68431 38972377
    592371 8ybk:A (2.69) BS02 dna N/A GO:0000786 ... P68431 38972377
    592372 8ybk:B (2.69) BS01 dna N/A GO:0000781 ... P62805 38972377
    592373 8ybk:B (2.69) BS02 dna N/A GO:0000781 ... P62805 38972377
    592374 8ybk:C (2.69) BS01 dna N/A GO:0000786 ... P04908 38972377
    592375 8ybk:C (2.69) BS02 dna N/A GO:0000786 ... P04908 38972377
    592376 8ybk:D (2.69) BS01 dna N/A GO:0000786 ... P06899 38972377
    592377 8ybk:E (2.69) BS01 dna N/A GO:0000786 ... P68431 38972377
    592378 8ybk:E (2.69) BS02 dna N/A GO:0000786 ... P68431 38972377
    592379 8ybk:F (2.69) BS01 dna N/A GO:0000781 ... P62805 38972377
    592380 8ybk:F (2.69) BS02 dna N/A GO:0000781 ... P62805 38972377
    592381 8ybk:G (2.69) BS01 dna N/A GO:0000786 ... P04908 38972377
    592382 8ybk:G (2.69) BS02 dna N/A GO:0000786 ... P04908 38972377
    592383 8ybk:H (2.69) BS01 dna N/A GO:0000786 ... P06899 38972377
    592384 8ybk:H (2.69) BS02 dna N/A GO:0000786 ... P06899 38972377
    592385 8yc0:e (4.12) BS01 peptide ? GO:0004888 ... P07766 38657677
    592386 8yc0:m (4.12) BS01 peptide ? GO:0002250 ... A0JD36
    B7Z8K6    		 38657677
    592387 8yc0:m (4.12) BS02 CLR ? GO:0002250 ... A0JD36
    B7Z8K6    		 38657677
    592388 8yc0:n (4.12) BS01 peptide ? GO:0002250 ... P0CF51
    Q99603    		 38657677
    592389 8yf1:A (3.38) BS01 VLX ? GO:0005783 ... Q7L0J3 N/A
    592390 8yf1:B (3.38) BS01 VLX ? GO:0005783 ... Q7L0J3 N/A
    592391 8ygw:A (3.301) BS01 B96 2.7.11.24 GO:0000165 ... Q15759 N/A
    592392 8ygy:A (2.401) BS01 FUC 3.4.21.35 GO:0003073 ... P06870 N/A
    592393 8yhf:A (1.4) BS01 A1D6I 2.7.11.30 GO:0004672 ... P36897 N/A
    592394 8yhl:A (1.47) BS01 A1D6I 2.7.11.30 GO:0004672 ... P36897 N/A
    592395 8yhr:A (1.7) BS01 ORO 1.3.5.2 GO:0004151 ... Q02127 38724483
    592396 8yhr:A (1.7) BS02 FMN 1.3.5.2 GO:0004151 ... Q02127 38724483
    592397 8yhr:A (1.7) BS03 A1LYU 1.3.5.2 GO:0004151 ... Q02127 38724483
    592398 8yj6:C (1.37) BS01 ZN N/A GO:0005886 ... P0A4G4 38747382
    592399 8yj7:A (2.8) BS01 ZN N/A GO:0005886 ... P0A4G4 38747382
    592400 8yj7:B (2.8) BS01 ZN N/A GO:0005886 ... P0A4G4 38747382
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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