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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    590401 8xgc:J (3.7) BS02 dna ? GO:0000076 ... Q04659 38448592
    590402 8xgc:M (3.7) BS01 dna ? GO:0000785 ... Q04636 38448592
    590403 8xgr:R (3.2) BS01 peptide ? GO:0000122 ... P24530 38128244
    590404 8xgt:A (2.813) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    590405 8xgt:A (2.813) BS02 A1D48 2.3.2.5 GO:0005515 ... Q16769 38817193
    590406 8xgt:B (2.813) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    590407 8xgt:B (2.813) BS02 A1D48 2.3.2.5 GO:0005515 ... Q16769 38817193
    590408 8xgt:C (2.813) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    590409 8xgt:C (2.813) BS02 A1D48 2.3.2.5 GO:0005515 ... Q16769 38817193
    590410 8xgt:D (2.813) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    590411 8xgt:D (2.813) BS02 A1D48 2.3.2.5 GO:0005515 ... Q16769 38817193
    590412 8xgt:E (2.813) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    590413 8xgt:E (2.813) BS02 A1D48 2.3.2.5 GO:0005515 ... Q16769 38817193
    590414 8xgt:F (2.813) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    590415 8xgt:F (2.813) BS02 A1D48 2.3.2.5 GO:0005515 ... Q16769 38817193
    590416 8xgt:F (2.813) BS03 A1D48 2.3.2.5 GO:0005515 ... Q16769 38817193
    590417 8xgt:G (2.813) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    590418 8xgt:G (2.813) BS02 A1D48 2.3.2.5 GO:0005515 ... Q16769 38817193
    590419 8xgt:H (2.813) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    590420 8xgt:H (2.813) BS02 A1D48 2.3.2.5 GO:0005515 ... Q16769 38817193
    590421 8xgt:I (2.813) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    590422 8xgt:I (2.813) BS02 A1D48 2.3.2.5 GO:0005515 ... Q16769 38817193
    590423 8xgt:J (2.813) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    590424 8xgt:J (2.813) BS02 A1D48 2.3.2.5 GO:0005515 ... Q16769 38817193
    590425 8xgt:K (2.813) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    590426 8xgt:K (2.813) BS02 A1D48 2.3.2.5 GO:0005515 ... Q16769 38817193
    590427 8xgt:L (2.813) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    590428 8xgt:L (2.813) BS02 A1D48 2.3.2.5 GO:0005515 ... Q16769 38817193
    590429 8xgy:A (2.81) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    590430 8xgy:A (2.81) BS02 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    590431 8xgy:A (2.81) BS03 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    590432 8xgy:B (2.81) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    590433 8xgy:B (2.81) BS02 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    590434 8xgy:C (2.81) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    590435 8xgy:C (2.81) BS02 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    590436 8xgy:C (2.81) BS03 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    590437 8xgy:D (2.81) BS01 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    590438 8xgy:D (2.81) BS02 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    590439 8xgy:D (2.81) BS03 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    590440 8xgy:E (2.81) BS01 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    590441 8xgy:E (2.81) BS02 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    590442 8xgy:E (2.81) BS03 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    590443 8xgy:F (2.81) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    590444 8xgy:F (2.81) BS02 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    590445 8xgy:F (2.81) BS03 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    590446 8xgy:G (2.81) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    590447 8xgy:G (2.81) BS02 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    590448 8xgy:H (2.81) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    590449 8xgy:H (2.81) BS02 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    590450 8xgy:H (2.81) BS03 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    590451 8xgy:I (2.81) BS01 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    590452 8xgy:I (2.81) BS02 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    590453 8xgy:I (2.81) BS03 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    590454 8xgy:J (2.81) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    590455 8xgy:J (2.81) BS02 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    590456 8xgy:K (2.81) BS01 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    590457 8xgy:K (2.81) BS02 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    590458 8xgy:K (2.81) BS03 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    590459 8xgy:L (2.81) BS01 ZN 2.3.2.5 GO:0005515 ... Q16769 38817193
    590460 8xgy:L (2.81) BS02 A1D5C 2.3.2.5 GO:0005515 ... Q16769 38817193
    590461 8xia:A (1.9) BS01 XLS 5.3.1.5 GO:0000287 ... P24300 2734296
    590462 8xia:A (1.9) BS02 MN 5.3.1.5 GO:0000287 ... P24300 2734296
    590463 8xia:A (1.9) BS03 MN 5.3.1.5 GO:0000287 ... P24300 2734296
    590464 8xim:A (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    590465 8xim:A (2.4) BS02 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    590466 8xim:B (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    590467 8xim:B (2.4) BS02 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    590468 8xim:C (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    590469 8xim:C (2.4) BS02 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    590470 8xim:D (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    590471 8xim:D (2.4) BS02 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    590472 8xio:A (2.65) BS01 A1D5D N/A GO:0004930 ... P30872 N/A
    590473 8xip:A (3.29) BS01 peptide N/A GO:0004930 ... P30872 N/A
    590474 8xir:A (2.52) BS01 peptide N/A GO:0004930 ... P32745 N/A
    590475 8xj6:A (3.32) BS01 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    590476 8xj6:B (3.32) BS01 AN2 ? GO:0004386 ... A0A7H0DN89 38914567
    590477 8xj6:C (3.32) BS01 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    590478 8xj6:D (3.32) BS01 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    590479 8xj6:E (3.32) BS01 AN2 ? GO:0004386 ... A0A7H0DN89 38914567
    590480 8xj6:E (3.32) BS02 ZN ? GO:0004386 ... A0A7H0DN89 38914567
    590481 8xj6:F (3.32) BS01 AN2 ? GO:0004386 ... A0A7H0DN89 38914567
    590482 8xj6:F (3.32) BS02 ZN ? GO:0004386 ... A0A7H0DN89 38914567
    590483 8xj7:A (2.74) BS01 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    590484 8xj7:B (2.74) BS01 dna ? GO:0004386 ... A0A7H0DN89 38914567
    590485 8xj7:B (2.74) BS02 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    590486 8xj7:B (2.74) BS03 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    590487 8xj7:C (2.74) BS01 dna ? GO:0004386 ... A0A7H0DN89 38914567
    590488 8xj7:C (2.74) BS02 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    590489 8xj7:C (2.74) BS03 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    590490 8xj7:D (2.74) BS01 dna ? GO:0004386 ... A0A7H0DN89 38914567
    590491 8xj7:D (2.74) BS02 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    590492 8xj7:D (2.74) BS03 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    590493 8xj7:E (2.74) BS01 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    590494 8xj7:E (2.74) BS02 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    590495 8xj7:F (2.74) BS01 ANP ? GO:0004386 ... A0A7H0DN89 38914567
    590496 8xjk:R (2.63) BS01 A1D5A ? GO:0004930 ... P43088 38446662
    590497 8xjl:R (2.77) BS01 UGU ? GO:0004930 ... P43088 38446662
    590498 8xjm:R (2.85) BS01 7WT ? GO:0004930 ... P43088 38446662
    590499 8xjn:R (3.06) BS01 A1D5A ? GO:0001669 ... P21731 38446662
    590500 8xjo:R (3.11) BS01 PUC ? GO:0001669 ... P21731 38446662
    590501 8xlm:D (3.22) BS01 MAN 3.4.17.-
    3.4.17.23    		 GO:0006508 ... Q9BYF1 38961765
    590502 8xln:D (3.78) BS01 MAN 3.4.17.-
    3.4.17.23    		 GO:0006508 ... Q9BYF1 38961765
    590503 8xlp:A (2.57) BS01 FE2 N/A GO:0005506 ... A6MVT2 N/A
    590504 8xlp:A (2.57) BS02 CLA N/A GO:0005506 ... A6MVT2 N/A
    590505 8xlp:A (2.57) BS03 CLA N/A GO:0005506 ... A6MVT2 N/A
    590506 8xlp:A (2.57) BS04 PHO N/A GO:0005506 ... A6MVT2 N/A
    590507 8xlp:A (2.57) BS05 CLA N/A GO:0005506 ... A6MVT2 N/A
    590508 8xlp:A (2.57) BS06 WVN N/A GO:0005506 ... A6MVT2 N/A
    590509 8xlp:A (2.57) BS07 BCT N/A GO:0005506 ... A6MVT2 N/A
    590510 8xlp:A (2.57) BS08 MN N/A GO:0005506 ... A6MVT2 N/A
    590511 8xlp:A (2.57) BS09 MN N/A GO:0005506 ... A6MVT2 N/A
    590512 8xlp:A (2.57) BS10 CLA N/A GO:0005506 ... A6MVT2 N/A
    590513 8xlp:A (2.57) BS11 CLA N/A GO:0005506 ... A6MVT2 N/A
    590514 8xlp:A (2.57) BS12 PHO N/A GO:0005506 ... A6MVT2 N/A
    590515 8xlp:A (2.57) BS13 CLA N/A GO:0005506 ... A6MVT2 N/A
    590516 8xlp:B (2.57) BS01 CLA N/A GO:0009507 ... A6MW31 N/A
    590517 8xlp:B (2.57) BS02 CLA N/A GO:0009507 ... A6MW31 N/A
    590518 8xlp:B (2.57) BS03 CLA N/A GO:0009507 ... A6MW31 N/A
    590519 8xlp:B (2.57) BS04 CLA N/A GO:0009507 ... A6MW31 N/A
    590520 8xlp:B (2.57) BS05 CLA N/A GO:0009507 ... A6MW31 N/A
    590521 8xlp:B (2.57) BS06 CLA N/A GO:0009507 ... A6MW31 N/A
    590522 8xlp:B (2.57) BS07 CLA N/A GO:0009507 ... A6MW31 N/A
    590523 8xlp:B (2.57) BS08 CLA N/A GO:0009507 ... A6MW31 N/A
    590524 8xlp:B (2.57) BS09 CLA N/A GO:0009507 ... A6MW31 N/A
    590525 8xlp:B (2.57) BS10 CLA N/A GO:0009507 ... A6MW31 N/A
    590526 8xlp:B (2.57) BS11 CLA N/A GO:0009507 ... A6MW31 N/A
    590527 8xlp:B (2.57) BS12 CLA N/A GO:0009507 ... A6MW31 N/A
    590528 8xlp:B (2.57) BS13 CLA N/A GO:0009507 ... A6MW31 N/A
    590529 8xlp:B (2.57) BS14 CLA N/A GO:0009507 ... A6MW31 N/A
    590530 8xlp:B (2.57) BS15 CLA N/A GO:0009507 ... A6MW31 N/A
    590531 8xlp:B (2.57) BS16 CLA N/A GO:0009507 ... A6MW31 N/A
    590532 8xlp:B (2.57) BS17 WVN N/A GO:0009507 ... A6MW31 N/A
    590533 8xlp:B (2.57) BS18 WVN N/A GO:0009507 ... A6MW31 N/A
    590534 8xlp:B (2.57) BS19 WVN N/A GO:0009507 ... A6MW31 N/A
    590535 8xlp:D (2.57) BS01 FE2 N/A GO:0005506 ... A6MVR3 N/A
    590536 8xlp:D (2.57) BS02 CLA N/A GO:0005506 ... A6MVR3 N/A
    590537 8xlp:D (2.57) BS03 PHO N/A GO:0005506 ... A6MVR3 N/A
    590538 8xlp:D (2.57) BS04 BCT N/A GO:0005506 ... A6MVR3 N/A
    590539 8xlp:D (2.57) BS05 CLA N/A GO:0005506 ... A6MVR3 N/A
    590540 8xlp:D (2.57) BS06 CLA N/A GO:0005506 ... A6MVR3 N/A
    590541 8xlp:D (2.57) BS07 PHO N/A GO:0005506 ... A6MVR3 N/A
    590542 8xlp:D (2.57) BS08 CLA N/A GO:0005506 ... A6MVR3 N/A
    590543 8xlp:D (2.57) BS09 CLA N/A GO:0005506 ... A6MVR3 N/A
    590544 8xlp:D (2.57) BS10 WVN N/A GO:0005506 ... A6MVR3 N/A
    590545 8xlp:E (2.57) BS01 HEM N/A GO:0005506 ... A6MVV5 N/A
    590546 8xlp:F (2.57) BS01 WVN N/A GO:0005506 ... A6MVV4 N/A
    590547 8xlp:F (2.57) BS02 HEM N/A GO:0005506 ... A6MVV4 N/A
    590548 8xlp:H (2.57) BS01 CLA N/A GO:0009507 ... A6MW35 N/A
    590549 8xlp:H (2.57) BS02 CLA N/A GO:0009507 ... A6MW35 N/A
    590550 8xlp:H (2.57) BS03 CLA N/A GO:0009507 ... A6MW35 N/A
    590551 8xlp:H (2.57) BS04 CLA N/A GO:0009507 ... A6MW35 N/A
    590552 8xlp:H (2.57) BS05 WVN N/A GO:0009507 ... A6MW35 N/A
    590553 8xlp:I (2.57) BS01 CLA N/A GO:0005737 ... A6MVW0 N/A
    590554 8xlp:I (2.57) BS02 WVN N/A GO:0005737 ... A6MVW0 N/A
    590555 8xlp:K (2.57) BS01 CLA N/A GO:0005737 ... A6MVZ3 N/A
    590556 8xlp:K (2.57) BS02 CLA N/A GO:0005737 ... A6MVZ3 N/A
    590557 8xlp:K (2.57) BS03 WVN N/A GO:0005737 ... A6MVZ3 N/A
    590558 8xlp:K (2.57) BS04 WVN N/A GO:0005737 ... A6MVZ3 N/A
    590559 8xlp:L (2.57) BS01 CLA N/A GO:0005737 ... A6MVV3 N/A
    590560 8xlp:X (2.57) BS01 CLA N/A GO:0009507 ... A6MVU5 N/A
    590561 8xlp:Y (2.57) BS01 WVN N/A GO:0009507 ... A6MVU9 N/A
    590562 8xlp:a (2.57) BS01 FE2 N/A GO:0005506 ... A6MVT2 N/A
    590563 8xlp:a (2.57) BS02 CLA N/A GO:0005506 ... A6MVT2 N/A
    590564 8xlp:a (2.57) BS03 CLA N/A GO:0005506 ... A6MVT2 N/A
    590565 8xlp:a (2.57) BS04 PHO N/A GO:0005506 ... A6MVT2 N/A
    590566 8xlp:a (2.57) BS05 CLA N/A GO:0005506 ... A6MVT2 N/A
    590567 8xlp:a (2.57) BS06 WVN N/A GO:0005506 ... A6MVT2 N/A
    590568 8xlp:a (2.57) BS07 BCT N/A GO:0005506 ... A6MVT2 N/A
    590569 8xlp:a (2.57) BS08 MN N/A GO:0005506 ... A6MVT2 N/A
    590570 8xlp:a (2.57) BS09 MN N/A GO:0005506 ... A6MVT2 N/A
    590571 8xlp:a (2.57) BS10 CLA N/A GO:0005506 ... A6MVT2 N/A
    590572 8xlp:a (2.57) BS11 CLA N/A GO:0005506 ... A6MVT2 N/A
    590573 8xlp:a (2.57) BS12 PHO N/A GO:0005506 ... A6MVT2 N/A
    590574 8xlp:a (2.57) BS13 CLA N/A GO:0005506 ... A6MVT2 N/A
    590575 8xlp:b (2.57) BS01 CLA N/A GO:0009507 ... A6MW31 N/A
    590576 8xlp:b (2.57) BS02 CLA N/A GO:0009507 ... A6MW31 N/A
    590577 8xlp:b (2.57) BS03 CLA N/A GO:0009507 ... A6MW31 N/A
    590578 8xlp:b (2.57) BS04 CLA N/A GO:0009507 ... A6MW31 N/A
    590579 8xlp:b (2.57) BS05 CLA N/A GO:0009507 ... A6MW31 N/A
    590580 8xlp:b (2.57) BS06 CLA N/A GO:0009507 ... A6MW31 N/A
    590581 8xlp:b (2.57) BS07 CLA N/A GO:0009507 ... A6MW31 N/A
    590582 8xlp:b (2.57) BS08 CLA N/A GO:0009507 ... A6MW31 N/A
    590583 8xlp:b (2.57) BS09 CLA N/A GO:0009507 ... A6MW31 N/A
    590584 8xlp:b (2.57) BS10 CLA N/A GO:0009507 ... A6MW31 N/A
    590585 8xlp:b (2.57) BS11 CLA N/A GO:0009507 ... A6MW31 N/A
    590586 8xlp:b (2.57) BS12 CLA N/A GO:0009507 ... A6MW31 N/A
    590587 8xlp:b (2.57) BS13 CLA N/A GO:0009507 ... A6MW31 N/A
    590588 8xlp:b (2.57) BS14 CLA N/A GO:0009507 ... A6MW31 N/A
    590589 8xlp:b (2.57) BS15 CLA N/A GO:0009507 ... A6MW31 N/A
    590590 8xlp:b (2.57) BS16 CLA N/A GO:0009507 ... A6MW31 N/A
    590591 8xlp:b (2.57) BS17 WVN N/A GO:0009507 ... A6MW31 N/A
    590592 8xlp:b (2.57) BS18 WVN N/A GO:0009507 ... A6MW31 N/A
    590593 8xlp:b (2.57) BS19 WVN N/A GO:0009507 ... A6MW31 N/A
    590594 8xlp:d (2.57) BS01 FE2 N/A GO:0005506 ... A6MVR3 N/A
    590595 8xlp:d (2.57) BS02 CLA N/A GO:0005506 ... A6MVR3 N/A
    590596 8xlp:d (2.57) BS03 PHO N/A GO:0005506 ... A6MVR3 N/A
    590597 8xlp:d (2.57) BS04 BCT N/A GO:0005506 ... A6MVR3 N/A
    590598 8xlp:d (2.57) BS05 CLA N/A GO:0005506 ... A6MVR3 N/A
    590599 8xlp:d (2.57) BS06 CLA N/A GO:0005506 ... A6MVR3 N/A
    590600 8xlp:d (2.57) BS07 PHO N/A GO:0005506 ... A6MVR3 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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