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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    587601 8waw:p (3.02) BS01 dna 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    587602 8waw:p (3.02) BS02 rna 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    587603 8waw:p (3.02) BS03 W0F 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    587604 8waw:p (3.02) BS04 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    587605 8waw:q (3.02) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    587606 8waw:s (3.02) BS01 dna ? GO:0001054 ... I3LSI7 38127763
    587607 8waw:w (3.02) BS01 ZN ? GO:0000428 ... P60899 38127763
    587608 8waw:w (3.02) BS02 ZN ? GO:0000428 ... P60899 38127763
    587609 8waw:x (3.02) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38127763
    587610 8waw:z (3.02) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763
    587611 8wax:o (2.75) BS01 peptide 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587612 8wax:o (2.75) BS02 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587613 8wax:o (2.75) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587614 8wax:o (2.75) BS04 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587615 8wax:o (2.75) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587616 8wax:o (2.75) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587617 8wax:o (2.75) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587618 8wax:o (2.75) BS08 W0F 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587619 8wax:p (2.75) BS01 dna 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    587620 8wax:p (2.75) BS02 rna 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    587621 8wax:p (2.75) BS03 W0F 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    587622 8wax:p (2.75) BS04 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    587623 8wax:q (2.75) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    587624 8wax:s (2.75) BS01 dna ? GO:0001054 ... I3LSI7 38127763
    587625 8wax:w (2.75) BS01 ZN ? GO:0000428 ... P60899 38127763
    587626 8wax:w (2.75) BS02 ZN ? GO:0000428 ... P60899 38127763
    587627 8wax:x (2.75) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38127763
    587628 8way:o (2.85) BS01 peptide 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587629 8way:o (2.85) BS02 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587630 8way:o (2.85) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587631 8way:o (2.85) BS04 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587632 8way:o (2.85) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587633 8way:o (2.85) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587634 8way:o (2.85) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587635 8way:o (2.85) BS08 W0F 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587636 8way:p (2.85) BS01 dna 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    587637 8way:p (2.85) BS02 rna 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    587638 8way:p (2.85) BS03 W0F 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    587639 8way:p (2.85) BS04 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    587640 8way:q (2.85) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    587641 8way:s (2.85) BS01 dna ? GO:0001054 ... I3LSI7 38127763
    587642 8way:w (2.85) BS01 ZN ? GO:0000428 ... P60899 38127763
    587643 8way:w (2.85) BS02 ZN ? GO:0000428 ... P60899 38127763
    587644 8way:x (2.85) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38127763
    587645 8waz:o (2.76) BS01 peptide 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587646 8waz:o (2.76) BS02 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587647 8waz:o (2.76) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587648 8waz:o (2.76) BS04 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587649 8waz:o (2.76) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587650 8waz:o (2.76) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587651 8waz:o (2.76) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587652 8waz:o (2.76) BS08 W0F 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587653 8waz:p (2.76) BS01 dna 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    587654 8waz:p (2.76) BS02 rna 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    587655 8waz:p (2.76) BS03 W0F 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    587656 8waz:p (2.76) BS04 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    587657 8waz:q (2.76) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    587658 8waz:s (2.76) BS01 dna ? GO:0001054 ... I3LSI7 38127763
    587659 8waz:w (2.76) BS01 ZN ? GO:0000428 ... P60899 38127763
    587660 8waz:w (2.76) BS02 ZN ? GO:0000428 ... P60899 38127763
    587661 8waz:x (2.76) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38127763
    587662 8waz:z (2.76) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763
    587663 8wb0:o (2.94) BS01 peptide 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587664 8wb0:o (2.94) BS02 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587665 8wb0:o (2.94) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587666 8wb0:o (2.94) BS04 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587667 8wb0:o (2.94) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587668 8wb0:o (2.94) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587669 8wb0:o (2.94) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587670 8wb0:o (2.94) BS08 W0F 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    587671 8wb0:p (2.94) BS01 dna 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    587672 8wb0:p (2.94) BS02 rna 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    587673 8wb0:p (2.94) BS03 W0F 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    587674 8wb0:p (2.94) BS04 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    587675 8wb0:q (2.94) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    587676 8wb0:s (2.94) BS01 dna ? GO:0001054 ... I3LSI7 38127763
    587677 8wb0:w (2.94) BS01 ZN ? GO:0000428 ... P60899 38127763
    587678 8wb0:w (2.94) BS02 ZN ? GO:0000428 ... P60899 38127763
    587679 8wb0:x (2.94) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38127763
    587680 8wb2:A (1.9) BS01 HEM ? GO:0000325 ... Q9FGT8 38103756
    587681 8wb4:A (2.47) BS01 peptide 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    587682 8wb4:A (2.47) BS02 OEX 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    587683 8wb4:A (2.47) BS03 CLA 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    587684 8wb4:A (2.47) BS04 CLA 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    587685 8wb4:A (2.47) BS05 PHO 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    587686 8wb4:A (2.47) BS06 CLA 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    587687 8wb4:A (2.47) BS07 8CT 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    587688 8wb4:A (2.47) BS08 BCT 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    587689 8wb4:A (2.47) BS09 CLA 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    587690 8wb4:A (2.47) BS10 PHO 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    587691 8wb4:A (2.47) BS11 CLA 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    587692 8wb4:A (2.47) BS12 FE2 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    587693 8wb4:A (2.47) BS13 CLA 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    587694 8wb4:B (2.47) BS01 CLA ? GO:0009523 ... A0A222AIE3 38806516
    587695 8wb4:B (2.47) BS02 CLA ? GO:0009523 ... A0A222AIE3 38806516
    587696 8wb4:B (2.47) BS03 CLA ? GO:0009523 ... A0A222AIE3 38806516
    587697 8wb4:B (2.47) BS04 CLA ? GO:0009523 ... A0A222AIE3 38806516
    587698 8wb4:B (2.47) BS05 CLA ? GO:0009523 ... A0A222AIE3 38806516
    587699 8wb4:B (2.47) BS06 CLA ? GO:0009523 ... A0A222AIE3 38806516
    587700 8wb4:B (2.47) BS07 CLA ? GO:0009523 ... A0A222AIE3 38806516
    587701 8wb4:B (2.47) BS08 CLA ? GO:0009523 ... A0A222AIE3 38806516
    587702 8wb4:B (2.47) BS09 CLA ? GO:0009523 ... A0A222AIE3 38806516
    587703 8wb4:B (2.47) BS10 CLA ? GO:0009523 ... A0A222AIE3 38806516
    587704 8wb4:B (2.47) BS11 CLA ? GO:0009523 ... A0A222AIE3 38806516
    587705 8wb4:B (2.47) BS12 CLA ? GO:0009523 ... A0A222AIE3 38806516
    587706 8wb4:B (2.47) BS13 CLA ? GO:0009523 ... A0A222AIE3 38806516
    587707 8wb4:B (2.47) BS14 CLA ? GO:0009523 ... A0A222AIE3 38806516
    587708 8wb4:B (2.47) BS15 CLA ? GO:0009523 ... A0A222AIE3 38806516
    587709 8wb4:B (2.47) BS16 CLA ? GO:0009523 ... A0A222AIE3 38806516
    587710 8wb4:B (2.47) BS17 8CT ? GO:0009523 ... A0A222AIE3 38806516
    587711 8wb4:B (2.47) BS18 8CT ? GO:0009523 ... A0A222AIE3 38806516
    587712 8wb4:B (2.47) BS19 8CT ? GO:0009523 ... A0A222AIE3 38806516
    587713 8wb4:C (2.47) BS01 OEX ? GO:0005737 ... A0A222AI36 38806516
    587714 8wb4:C (2.47) BS02 8CT ? GO:0005737 ... A0A222AI36 38806516
    587715 8wb4:C (2.47) BS03 8CT ? GO:0005737 ... A0A222AI36 38806516
    587716 8wb4:C (2.47) BS04 CLA ? GO:0005737 ... A0A222AI36 38806516
    587717 8wb4:C (2.47) BS05 CLA ? GO:0005737 ... A0A222AI36 38806516
    587718 8wb4:C (2.47) BS06 CLA ? GO:0005737 ... A0A222AI36 38806516
    587719 8wb4:C (2.47) BS07 CLA ? GO:0005737 ... A0A222AI36 38806516
    587720 8wb4:C (2.47) BS08 CLA ? GO:0005737 ... A0A222AI36 38806516
    587721 8wb4:C (2.47) BS09 CLA ? GO:0005737 ... A0A222AI36 38806516
    587722 8wb4:C (2.47) BS10 CLA ? GO:0005737 ... A0A222AI36 38806516
    587723 8wb4:C (2.47) BS11 CLA ? GO:0005737 ... A0A222AI36 38806516
    587724 8wb4:C (2.47) BS12 CLA ? GO:0005737 ... A0A222AI36 38806516
    587725 8wb4:C (2.47) BS13 CLA ? GO:0005737 ... A0A222AI36 38806516
    587726 8wb4:C (2.47) BS14 CLA ? GO:0005737 ... A0A222AI36 38806516
    587727 8wb4:C (2.47) BS15 CLA ? GO:0005737 ... A0A222AI36 38806516
    587728 8wb4:C (2.47) BS16 CLA ? GO:0005737 ... A0A222AI36 38806516
    587729 8wb4:C (2.47) BS17 8CT ? GO:0005737 ... A0A222AI36 38806516
    587730 8wb4:D (2.47) BS01 CLA 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    587731 8wb4:D (2.47) BS02 PHO 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    587732 8wb4:D (2.47) BS03 CLA 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    587733 8wb4:D (2.47) BS04 PHO 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    587734 8wb4:D (2.47) BS05 CLA 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    587735 8wb4:D (2.47) BS06 CLA 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    587736 8wb4:D (2.47) BS07 FE2 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    587737 8wb4:D (2.47) BS08 8CT 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    587738 8wb4:D (2.47) BS09 CLA 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    587739 8wb4:E (2.47) BS01 peptide ? GO:0005506 ... A0A222AI74 38806516
    587740 8wb4:E (2.47) BS02 HEM ? GO:0005506 ... A0A222AI74 38806516
    587741 8wb4:F (2.47) BS01 peptide ? GO:0005506 ... A0A222AI51 38806516
    587742 8wb4:F (2.47) BS02 HEM ? GO:0005506 ... A0A222AI51 38806516
    587743 8wb4:H (2.47) BS01 8CT ? GO:0009523 ... A0A222AIE4 38806516
    587744 8wb4:H (2.47) BS02 CLA ? GO:0009523 ... A0A222AIE4 38806516
    587745 8wb4:H (2.47) BS03 CLA ? GO:0009523 ... A0A222AIE4 38806516
    587746 8wb4:H (2.47) BS04 CLA ? GO:0009523 ... A0A222AIE4 38806516
    587747 8wb4:I (2.47) BS01 CLA ? GO:0005737 ... A0A222AI80 38806516
    587748 8wb4:I (2.47) BS02 CLA ? GO:0005737 ... A0A222AI80 38806516
    587749 8wb4:I (2.47) BS03 8CT ? GO:0005737 ... A0A222AI80 38806516
    587750 8wb4:K (2.47) BS01 8CT ? GO:0005737 ... A0A222AIA0 38806516
    587751 8wb4:K (2.47) BS02 8CT ? GO:0005737 ... A0A222AIA0 38806516
    587752 8wb4:K (2.47) BS03 CLA ? GO:0005737 ... A0A222AIA0 38806516
    587753 8wb4:K (2.47) BS04 CLA ? GO:0005737 ... A0A222AIA0 38806516
    587754 8wb4:X (2.47) BS01 CLA ? GO:0009523 ... A0A222AI61 38806516
    587755 8wb4:Y (2.47) BS01 8CT ? GO:0009523 ... A0A222AI69 38806516
    587756 8wb4:Z (2.47) BS01 8CT ? GO:0009523 ... A0A222AI96 38806516
    587757 8wb4:Z (2.47) BS02 KC2 ? GO:0009523 ... A0A222AI96 38806516
    587758 8wb4:a (2.47) BS01 peptide 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    587759 8wb4:a (2.47) BS02 CLA 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    587760 8wb4:a (2.47) BS03 CLA 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    587761 8wb4:a (2.47) BS04 CLA 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    587762 8wb4:a (2.47) BS05 PHO 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    587763 8wb4:a (2.47) BS06 BCT 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    587764 8wb4:a (2.47) BS07 OEX 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    587765 8wb4:a (2.47) BS08 CLA 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    587766 8wb4:a (2.47) BS09 CLA 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    587767 8wb4:a (2.47) BS10 PHO 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    587768 8wb4:a (2.47) BS11 CLA 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    587769 8wb4:a (2.47) BS12 8CT 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    587770 8wb4:b (2.47) BS01 8CT ? GO:0009523 ... A0A222AIE3 38806516
    587771 8wb4:b (2.47) BS02 CLA ? GO:0009523 ... A0A222AIE3 38806516
    587772 8wb4:b (2.47) BS03 CLA ? GO:0009523 ... A0A222AIE3 38806516
    587773 8wb4:b (2.47) BS04 CLA ? GO:0009523 ... A0A222AIE3 38806516
    587774 8wb4:b (2.47) BS05 CLA ? GO:0009523 ... A0A222AIE3 38806516
    587775 8wb4:b (2.47) BS06 CLA ? GO:0009523 ... A0A222AIE3 38806516
    587776 8wb4:b (2.47) BS07 CLA ? GO:0009523 ... A0A222AIE3 38806516
    587777 8wb4:b (2.47) BS08 CLA ? GO:0009523 ... A0A222AIE3 38806516
    587778 8wb4:b (2.47) BS09 CLA ? GO:0009523 ... A0A222AIE3 38806516
    587779 8wb4:b (2.47) BS10 CLA ? GO:0009523 ... A0A222AIE3 38806516
    587780 8wb4:b (2.47) BS11 CLA ? GO:0009523 ... A0A222AIE3 38806516
    587781 8wb4:b (2.47) BS12 CLA ? GO:0009523 ... A0A222AIE3 38806516
    587782 8wb4:b (2.47) BS13 CLA ? GO:0009523 ... A0A222AIE3 38806516
    587783 8wb4:b (2.47) BS14 CLA ? GO:0009523 ... A0A222AIE3 38806516
    587784 8wb4:b (2.47) BS15 CLA ? GO:0009523 ... A0A222AIE3 38806516
    587785 8wb4:b (2.47) BS16 CLA ? GO:0009523 ... A0A222AIE3 38806516
    587786 8wb4:b (2.47) BS17 CLA ? GO:0009523 ... A0A222AIE3 38806516
    587787 8wb4:b (2.47) BS18 8CT ? GO:0009523 ... A0A222AIE3 38806516
    587788 8wb4:b (2.47) BS19 8CT ? GO:0009523 ... A0A222AIE3 38806516
    587789 8wb4:c (2.47) BS01 CLA ? GO:0005737 ... A0A222AI36 38806516
    587790 8wb4:c (2.47) BS02 CLA ? GO:0005737 ... A0A222AI36 38806516
    587791 8wb4:c (2.47) BS03 CLA ? GO:0005737 ... A0A222AI36 38806516
    587792 8wb4:c (2.47) BS04 CLA ? GO:0005737 ... A0A222AI36 38806516
    587793 8wb4:c (2.47) BS05 CLA ? GO:0005737 ... A0A222AI36 38806516
    587794 8wb4:c (2.47) BS06 CLA ? GO:0005737 ... A0A222AI36 38806516
    587795 8wb4:c (2.47) BS07 CLA ? GO:0005737 ... A0A222AI36 38806516
    587796 8wb4:c (2.47) BS08 CLA ? GO:0005737 ... A0A222AI36 38806516
    587797 8wb4:c (2.47) BS09 CLA ? GO:0005737 ... A0A222AI36 38806516
    587798 8wb4:c (2.47) BS10 CLA ? GO:0005737 ... A0A222AI36 38806516
    587799 8wb4:c (2.47) BS11 CLA ? GO:0005737 ... A0A222AI36 38806516
    587800 8wb4:c (2.47) BS12 CLA ? GO:0005737 ... A0A222AI36 38806516

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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