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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    58201 2nyb:D (1.1) BS01 FE2 1.15.1.1 GO:0000303 ... P0AGD3 17628062
    58202 2nyb:D (1.1) BS02 O 1.15.1.1 GO:0000303 ... P0AGD3 17628062
    58203 2nyd:A (2.0) BS01 ZN ? GO:0005737 ... P67273 17187687
    58204 2nyd:A (2.0) BS02 ZN ? GO:0005737 ... P67273 17187687
    58205 2nyd:B (2.0) BS01 ZN ? GO:0005737 ... P67273 17187687
    58206 2nyd:B (2.0) BS02 ZN ? GO:0005737 ... P67273 17187687
    58207 2nyj:A (3.2) BS01 ATP ? GO:0005216 ... O35433 17582331
    58208 2nyl:C (3.8) BS01 peptide 3.1.3.16 GO:0000159 ... P67775 17174897
    58209 2nyl:C (3.8) BS02 MN 3.1.3.16 GO:0000159 ... P67775 17174897
    58210 2nyl:C (3.8) BS03 MN 3.1.3.16 GO:0000159 ... P67775 17174897
    58211 2nyl:F (3.8) BS01 peptide 3.1.3.16 GO:0000159 ... P67775 17174897
    58212 2nyl:F (3.8) BS02 MN 3.1.3.16 GO:0000159 ... P67775 17174897
    58213 2nyl:F (3.8) BS03 MN 3.1.3.16 GO:0000159 ... P67775 17174897
    58214 2nym:C (3.6) BS01 peptide 3.1.3.16 GO:0000159 ... P67775 17174897
    58215 2nym:C (3.6) BS02 MN 3.1.3.16 GO:0000159 ... P67775 17174897
    58216 2nym:C (3.6) BS03 MN 3.1.3.16 GO:0000159 ... P67775 17174897
    58217 2nym:F (3.6) BS01 peptide 3.1.3.16 GO:0000159 ... P67775 17174897
    58218 2nym:F (3.6) BS02 MN 3.1.3.16 GO:0000159 ... P67775 17174897
    58219 2nym:F (3.6) BS03 MN 3.1.3.16 GO:0000159 ... P67775 17174897
    58220 2nyp:A (1.84) BS01 ZN 3.5.2.6 GO:0008270 ... P04190 17915249
    58221 2nyp:A (1.84) BS02 ZN 3.5.2.6 GO:0008270 ... P04190 17915249
    58222 2nyy:A (2.61) BS01 ZN 3.4.24.69 GO:0004222 ... P0DPI1 17173035
    58223 2nz0:B (3.2) BS01 ZN ? GO:0005249 ... Q9UK17 17187064
    58224 2nz0:D (3.2) BS01 ZN ? GO:0005249 ... Q9UK17 17187064
    58225 2nz2:A (2.4) BS01 ASP 6.3.4.5 GO:0000050 ... P00966 18323623
    58226 2nz2:A (2.4) BS02 CIR 6.3.4.5 GO:0000050 ... P00966 18323623
    58227 2nz9:A (3.79) BS01 ZN 3.4.24.69 GO:0004222 ... P0DPI1 17173035
    58228 2nz9:A (3.79) BS02 CA 3.4.24.69 GO:0004222 ... P0DPI1 17173035
    58229 2nz9:B (3.79) BS01 ZN 3.4.24.69 GO:0004222 ... P0DPI1 17173035
    58230 2nzd:A (2.65) BS01 dna ? GO:0000786 ... P84233 17379244
    58231 2nzd:A (2.65) BS02 dna ? GO:0000786 ... P84233 17379244
    58232 2nzd:B (2.65) BS01 dna ? GO:0000786 ... P62799 17379244
    58233 2nzd:B (2.65) BS02 dna ? GO:0000786 ... P62799 17379244
    58234 2nzd:C (2.65) BS01 dna ? GO:0000786 ... P06897 17379244
    58235 2nzd:C (2.65) BS02 dna ? GO:0000786 ... P06897 17379244
    58236 2nzd:D (2.65) BS01 dna ? GO:0000786 ... P02281 17379244
    58237 2nzd:D (2.65) BS02 dna ? GO:0000786 ... P02281 17379244
    58238 2nzd:E (2.65) BS01 dna ? GO:0000786 ... P84233 17379244
    58239 2nzd:E (2.65) BS02 dna ? GO:0000786 ... P84233 17379244
    58240 2nzd:F (2.65) BS01 dna ? GO:0000786 ... P62799 17379244
    58241 2nzd:F (2.65) BS02 dna ? GO:0000786 ... P62799 17379244
    58242 2nzd:G (2.65) BS01 dna ? GO:0000786 ... P06897 17379244
    58243 2nzd:G (2.65) BS02 dna ? GO:0000786 ... P06897 17379244
    58244 2nzd:H (2.65) BS01 dna ? GO:0000786 ... P02281 17379244
    58245 2nzd:H (2.65) BS02 dna ? GO:0000786 ... P02281 17379244
    58246 2nze:A (1.8) BS01 ZN 3.5.2.6 GO:0008270 ... P04190 17915249
    58247 2nze:B (1.8) BS01 ZN 3.5.2.6 GO:0008270 ... P04190 17915249
    58248 2nzf:A (2.28) BS01 ZN 3.5.2.6 GO:0008270 ... P04190 17915249
    58249 2nzl:A (1.35) BS01 FMN 1.1.3.15
    1.2.3.5
    GO:0001561 ... Q9UJM8 N/A
    58250 2nzm:A (1.8) BS01 ADA 4.2.2.2 GO:0005576 ... P39116 20000851
    58251 2nzm:A (1.8) BS02 ADA 4.2.2.2 GO:0005576 ... P39116 20000851
    58252 2nzm:A (1.8) BS03 ADA 4.2.2.2 GO:0005576 ... P39116 20000851
    58253 2nzm:A (1.8) BS04 CA 4.2.2.2 GO:0005576 ... P39116 20000851
    58254 2nzm:A (1.8) BS05 CA 4.2.2.2 GO:0005576 ... P39116 20000851
    58255 2nzt:A (2.45) BS01 GLC 2.7.1.1 GO:0001666 ... P52789 29298880
    58256 2nzt:A (2.45) BS02 BG6 2.7.1.1 GO:0001666 ... P52789 29298880
    58257 2nzt:A (2.45) BS03 GLC 2.7.1.1 GO:0001666 ... P52789 29298880
    58258 2nzt:A (2.45) BS04 BG6 2.7.1.1 GO:0001666 ... P52789 29298880
    58259 2nzt:B (2.45) BS01 GLC 2.7.1.1 GO:0001666 ... P52789 29298880
    58260 2nzt:B (2.45) BS02 BG6 2.7.1.1 GO:0001666 ... P52789 29298880
    58261 2nzt:B (2.45) BS03 GLC 2.7.1.1 GO:0001666 ... P52789 29298880
    58262 2nzt:B (2.45) BS04 BG6 2.7.1.1 GO:0001666 ... P52789 29298880
    58263 2nzx:A (1.9) BS01 GDP 2.4.1.152 GO:0006486 ... O30511 17251184
    58264 2nzx:B (1.9) BS01 GDP 2.4.1.152 GO:0006486 ... O30511 17251184
    58265 2nzx:C (1.9) BS01 GDP 2.4.1.152 GO:0006486 ... O30511 17251184
    58266 2nzy:A (2.05) BS01 FUC 2.4.1.152 GO:0006486 ... O30511 17251184
    58267 2nzy:A (2.05) BS02 GDP 2.4.1.152 GO:0006486 ... O30511 17251184
    58268 2nzy:B (2.05) BS01 FUC 2.4.1.152 GO:0006486 ... O30511 17251184
    58269 2nzy:B (2.05) BS02 GDP 2.4.1.152 GO:0006486 ... O30511 17251184
    58270 2nzy:C (2.05) BS01 FUC 2.4.1.152 GO:0006486 ... O30511 17251184
    58271 2nzy:C (2.05) BS02 GDP 2.4.1.152 GO:0006486 ... O30511 17251184
    58272 2o01:1 (3.4) BS01 CLA ? GO:0009765 ... Q01667 17476261
    58273 2o01:1 (3.4) BS02 CLA ? GO:0009765 ... Q01667 17476261
    58274 2o01:1 (3.4) BS03 CLA ? GO:0009765 ... Q01667 17476261
    58275 2o01:1 (3.4) BS04 CLA ? GO:0009765 ... Q01667 17476261
    58276 2o01:1 (3.4) BS05 CLA ? GO:0009765 ... Q01667 17476261
    58277 2o01:1 (3.4) BS06 CLA ? GO:0009765 ... Q01667 17476261
    58278 2o01:2 (3.4) BS01 CLA ? GO:0009765 ... Q41038 17476261
    58279 2o01:2 (3.4) BS02 CLA ? GO:0009765 ... Q41038 17476261
    58280 2o01:2 (3.4) BS03 CLA ? GO:0009765 ... Q41038 17476261
    58281 2o01:2 (3.4) BS04 CLA ? GO:0009765 ... Q41038 17476261
    58282 2o01:2 (3.4) BS05 CLA ? GO:0009765 ... Q41038 17476261
    58283 2o01:2 (3.4) BS06 CLA ? GO:0009765 ... Q41038 17476261
    58284 2o01:3 (3.4) BS01 CLA ? GO:0009765 ... Q9SY97 17476261
    58285 2o01:3 (3.4) BS02 CLA ? GO:0009765 ... Q9SY97 17476261
    58286 2o01:3 (3.4) BS03 CLA ? GO:0009765 ... Q9SY97 17476261
    58287 2o01:3 (3.4) BS04 CLA ? GO:0009765 ... Q9SY97 17476261
    58288 2o01:3 (3.4) BS05 CLA ? GO:0009765 ... Q9SY97 17476261
    58289 2o01:3 (3.4) BS06 CLA ? GO:0009765 ... Q9SY97 17476261
    58290 2o01:4 (3.4) BS01 CLA ? GO:0009765 ... Q9SQL2 17476261
    58291 2o01:4 (3.4) BS02 CLA ? GO:0009765 ... Q9SQL2 17476261
    58292 2o01:4 (3.4) BS03 CLA ? GO:0009765 ... Q9SQL2 17476261
    58293 2o01:4 (3.4) BS04 CLA ? GO:0009765 ... Q9SQL2 17476261
    58294 2o01:4 (3.4) BS05 CLA ? GO:0009765 ... Q9SQL2 17476261
    58295 2o01:4 (3.4) BS06 CLA ? GO:0009765 ... Q9SQL2 17476261
    58296 2o01:4 (3.4) BS07 CLA ? GO:0009765 ... Q9SQL2 17476261
    58297 2o01:A (3.4) BS01 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    58298 2o01:A (3.4) BS02 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    58299 2o01:A (3.4) BS03 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    58300 2o01:A (3.4) BS04 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    58301 2o01:A (3.4) BS05 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    58302 2o01:A (3.4) BS06 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    58303 2o01:A (3.4) BS07 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    58304 2o01:A (3.4) BS08 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    58305 2o01:A (3.4) BS09 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    58306 2o01:A (3.4) BS10 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    58307 2o01:A (3.4) BS11 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    58308 2o01:A (3.4) BS12 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    58309 2o01:A (3.4) BS13 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    58310 2o01:A (3.4) BS14 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    58311 2o01:A (3.4) BS15 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    58312 2o01:A (3.4) BS16 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    58313 2o01:A (3.4) BS17 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    58314 2o01:A (3.4) BS18 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    58315 2o01:A (3.4) BS19 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    58316 2o01:A (3.4) BS20 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    58317 2o01:A (3.4) BS21 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    58318 2o01:A (3.4) BS22 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    58319 2o01:A (3.4) BS23 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    58320 2o01:A (3.4) BS24 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    58321 2o01:A (3.4) BS25 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    58322 2o01:A (3.4) BS26 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    58323 2o01:A (3.4) BS27 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    58324 2o01:A (3.4) BS28 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    58325 2o01:A (3.4) BS29 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    58326 2o01:A (3.4) BS30 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    58327 2o01:A (3.4) BS31 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    58328 2o01:A (3.4) BS32 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    58329 2o01:A (3.4) BS33 PQN 1.97.1.12 GO:0000287 ... P05310 17476261
    58330 2o01:A (3.4) BS34 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    58331 2o01:A (3.4) BS35 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    58332 2o01:A (3.4) BS36 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    58333 2o01:A (3.4) BS37 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    58334 2o01:A (3.4) BS38 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    58335 2o01:A (3.4) BS39 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    58336 2o01:A (3.4) BS40 SF4 1.97.1.12 GO:0000287 ... P05310 17476261
    58337 2o01:A (3.4) BS41 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    58338 2o01:B (3.4) BS01 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    58339 2o01:B (3.4) BS02 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    58340 2o01:B (3.4) BS03 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    58341 2o01:B (3.4) BS04 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    58342 2o01:B (3.4) BS05 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    58343 2o01:B (3.4) BS06 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    58344 2o01:B (3.4) BS07 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    58345 2o01:B (3.4) BS08 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    58346 2o01:B (3.4) BS09 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    58347 2o01:B (3.4) BS10 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    58348 2o01:B (3.4) BS11 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    58349 2o01:B (3.4) BS12 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    58350 2o01:B (3.4) BS13 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    58351 2o01:B (3.4) BS14 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    58352 2o01:B (3.4) BS15 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    58353 2o01:B (3.4) BS16 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    58354 2o01:B (3.4) BS17 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    58355 2o01:B (3.4) BS18 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    58356 2o01:B (3.4) BS19 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    58357 2o01:B (3.4) BS20 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    58358 2o01:B (3.4) BS21 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    58359 2o01:B (3.4) BS22 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    58360 2o01:B (3.4) BS23 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    58361 2o01:B (3.4) BS24 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    58362 2o01:B (3.4) BS25 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    58363 2o01:B (3.4) BS26 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    58364 2o01:B (3.4) BS27 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    58365 2o01:B (3.4) BS28 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    58366 2o01:B (3.4) BS29 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    58367 2o01:B (3.4) BS30 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    58368 2o01:B (3.4) BS31 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    58369 2o01:B (3.4) BS32 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    58370 2o01:B (3.4) BS33 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    58371 2o01:B (3.4) BS34 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    58372 2o01:B (3.4) BS35 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    58373 2o01:B (3.4) BS36 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    58374 2o01:B (3.4) BS37 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    58375 2o01:B (3.4) BS38 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    58376 2o01:B (3.4) BS39 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    58377 2o01:B (3.4) BS40 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    58378 2o01:B (3.4) BS41 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    58379 2o01:B (3.4) BS42 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    58380 2o01:B (3.4) BS43 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    58381 2o01:B (3.4) BS44 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    58382 2o01:B (3.4) BS45 SF4 1.97.1.12 GO:0000287 ... P05311 17476261
    58383 2o01:B (3.4) BS46 PQN 1.97.1.12 GO:0000287 ... P05311 17476261
    58384 2o01:B (3.4) BS47 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    58385 2o01:B (3.4) BS48 CLA 1.97.1.12 GO:0000287 ... P05311 17476261
    58386 2o01:C (3.4) BS01 SF4 1.97.1.12 GO:0009055 ... P10793 17476261
    58387 2o01:C (3.4) BS02 SF4 1.97.1.12 GO:0009055 ... P10793 17476261
    58388 2o01:F (3.4) BS01 CLA ? GO:0009522 ... P12355 17476261
    58389 2o01:F (3.4) BS02 CLA ? GO:0009522 ... P12355 17476261
    58390 2o01:F (3.4) BS03 CLA ? GO:0009522 ... P12355 17476261
    58391 2o01:F (3.4) BS04 CLA ? GO:0009522 ... P12355 17476261
    58392 2o01:G (3.4) BS01 CLA ? GO:0009522 ... P12357 17476261
    58393 2o01:G (3.4) BS02 CLA ? GO:0009522 ... P12357 17476261
    58394 2o01:G (3.4) BS03 CLA ? GO:0009522 ... P12357 17476261
    58395 2o01:H (3.4) BS01 CLA ? GO:0009522 ... P22179 17476261
    58396 2o01:I (3.4) BS01 CLA ? GO:0009522 ... P17227 17476261
    58397 2o01:I (3.4) BS02 CLA ? GO:0009522 ... P17227 17476261
    58398 2o01:I (3.4) BS03 CLA ? GO:0009522 ... P17227 17476261
    58399 2o01:J (3.4) BS01 CLA ? GO:0009507 ... P17230 17476261
    58400 2o01:L (3.4) BS01 CLA ? GO:0009522 ... Q41385 17476261

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218