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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    576001 8si7:D (2.59) BS05 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    576002 8si8:A (2.99) BS01 3FD 2.7.11.1 GO:0005216 ... Q923J1 37156763
    576003 8si8:A (2.99) BS02 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    576004 8si8:A (2.99) BS03 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    576005 8si8:A (2.99) BS04 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    576006 8si8:A (2.99) BS05 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    576007 8si8:B (2.99) BS01 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    576008 8si8:B (2.99) BS02 3FD 2.7.11.1 GO:0005216 ... Q923J1 37156763
    576009 8si8:B (2.99) BS03 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    576010 8si8:B (2.99) BS04 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    576011 8si8:B (2.99) BS05 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    576012 8si8:C (2.99) BS01 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    576013 8si8:C (2.99) BS02 3FD 2.7.11.1 GO:0005216 ... Q923J1 37156763
    576014 8si8:C (2.99) BS03 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    576015 8si8:C (2.99) BS04 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    576016 8si8:C (2.99) BS05 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    576017 8si8:D (2.99) BS01 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    576018 8si8:D (2.99) BS02 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    576019 8si8:D (2.99) BS03 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    576020 8si8:D (2.99) BS04 3FD 2.7.11.1 GO:0005216 ... Q923J1 37156763
    576021 8si8:D (2.99) BS05 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    576022 8si9:A (2.98) BS01 Y4B ? GO:0004888 ... P47870 37607940
    576023 8si9:A (2.98) BS02 ABU ? GO:0004888 ... P47870 37607940
    576024 8si9:B (2.98) BS01 Y4B ? GO:0004888 ... P14867 37607940
    576025 8si9:B (2.98) BS02 ABU ? GO:0004888 ... P14867 37607940
    576026 8si9:C (2.98) BS01 ABU ? GO:0004888 ... P47870 37607940
    576027 8si9:C (2.98) BS02 Y4B ? GO:0004888 ... P47870 37607940
    576028 8si9:D (2.98) BS01 ABU ? GO:0004888 ... P14867 37607940
    576029 8si9:D (2.98) BS02 Y4B ? GO:0004888 ... P14867 37607940
    576030 8si9:E (2.98) BS01 MAN ? GO:0004888 ... P18507 37607940
    576031 8sia:A (2.91) BS01 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    576032 8sia:A (2.91) BS02 6RA 2.7.11.1 GO:0005216 ... Q923J1 37156763
    576033 8sia:A (2.91) BS03 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    576034 8sia:A (2.91) BS04 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    576035 8sia:B (2.91) BS01 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    576036 8sia:B (2.91) BS02 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    576037 8sia:B (2.91) BS03 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    576038 8sia:B (2.91) BS04 6RA 2.7.11.1 GO:0005216 ... Q923J1 37156763
    576039 8sia:B (2.91) BS05 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    576040 8sia:C (2.91) BS01 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    576041 8sia:C (2.91) BS02 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    576042 8sia:C (2.91) BS03 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    576043 8sia:C (2.91) BS04 6RA 2.7.11.1 GO:0005216 ... Q923J1 37156763
    576044 8sia:C (2.91) BS05 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    576045 8sia:D (2.91) BS01 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    576046 8sia:D (2.91) BS02 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    576047 8sia:D (2.91) BS03 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    576048 8sia:D (2.91) BS04 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    576049 8sia:D (2.91) BS05 6RA 2.7.11.1 GO:0005216 ... Q923J1 37156763
    576050 8sid:A (2.71) BS01 ABU ? GO:0004888 ... P47870 37607940
    576051 8sid:B (2.71) BS01 ABU ? GO:0004888 ... P14867 37607940
    576052 8sid:C (2.71) BS01 ABU ? GO:0004888 ... P47870 37607940
    576053 8sid:C (2.71) BS02 Q3G ? GO:0004888 ... P47870 37607940
    576054 8sid:D (2.71) BS01 ABU ? GO:0004888 ... P14867 37607940
    576055 8sid:E (2.71) BS01 MAN ? GO:0004888 ... P18507 37607940
    576056 8sie:C (2.7) BS01 CLR ? GO:0005886 ... I3L8V6 38184688
    576057 8sie:C (2.7) BS02 CLR ? GO:0005886 ... I3L8V6 38184688
    576058 8sie:C (2.7) BS03 CLR ? GO:0005886 ... I3L8V6 38184688
    576059 8sie:C (2.7) BS04 CLR ? GO:0005886 ... I3L8V6 38184688
    576060 8sie:C (2.7) BS05 LBN ? GO:0005886 ... I3L8V6 38184688
    576061 8sie:C (2.7) BS06 CLR ? GO:0005886 ... I3L8V6 38184688
    576062 8sie:C (2.7) BS07 BCT ? GO:0005886 ... I3L8V6 38184688
    576063 8sie:C (2.7) BS08 BCT ? GO:0005886 ... I3L8V6 38184688
    576064 8sie:C (2.7) BS09 AV0 ? GO:0005886 ... I3L8V6 38184688
    576065 8sie:D (2.7) BS01 CLR ? GO:0005886 ... I3L8V6 38184688
    576066 8sie:D (2.7) BS02 CLR ? GO:0005886 ... I3L8V6 38184688
    576067 8sie:D (2.7) BS03 CLR ? GO:0005886 ... I3L8V6 38184688
    576068 8sie:D (2.7) BS04 CLR ? GO:0005886 ... I3L8V6 38184688
    576069 8sie:D (2.7) BS05 CLR ? GO:0005886 ... I3L8V6 38184688
    576070 8sie:D (2.7) BS06 LBN ? GO:0005886 ... I3L8V6 38184688
    576071 8sie:D (2.7) BS07 BCT ? GO:0005886 ... I3L8V6 38184688
    576072 8sie:D (2.7) BS08 BCT ? GO:0005886 ... I3L8V6 38184688
    576073 8sie:D (2.7) BS09 AV0 ? GO:0005886 ... I3L8V6 38184688
    576074 8sik:B (2.9) BS01 CA ? GO:0000086 ... P0DP23 37192161
    576075 8sik:F (2.9) BS01 CA ? GO:0000086 ... P0DP23 37192161
    576076 8sik:H (2.9) BS01 CA ? GO:0000086 ... P0DP23 37192161
    576077 8sim:B (6.2) BS01 CA ? GO:0000086 ... P0DP23 37192161
    576078 8sim:B (6.2) BS02 CA ? GO:0000086 ... P0DP23 37192161
    576079 8sim:D (6.2) BS01 CA ? GO:0000086 ... P0DP23 37192161
    576080 8sim:D (6.2) BS02 CA ? GO:0000086 ... P0DP23 37192161
    576081 8sim:F (6.2) BS01 CA ? GO:0000086 ... P0DP23 37192161
    576082 8sim:F (6.2) BS02 CA ? GO:0000086 ... P0DP23 37192161
    576083 8sim:H (6.2) BS01 CA ? GO:0000086 ... P0DP23 37192161
    576084 8sim:H (6.2) BS02 CA ? GO:0000086 ... P0DP23 37192161
    576085 8siy:A (2.9) BS01 peptide ? GO:0000775 ... A0A140UHX1 37551430
    576086 8siy:C (2.9) BS01 dna ? GO:0000786 ... P84233 37551430
    576087 8siy:C (2.9) BS02 dna ? GO:0000786 ... P84233 37551430
    576088 8siy:D (2.9) BS01 dna ? GO:0000786 ... P62799 37551430
    576089 8siy:D (2.9) BS02 dna ? GO:0000786 ... P62799 37551430
    576090 8siy:E (2.9) BS01 dna ? GO:0000786 ... P06897 37551430
    576091 8siy:E (2.9) BS02 dna ? GO:0000786 ... P06897 37551430
    576092 8siy:F (2.9) BS01 dna ? GO:0000786 ... P02281 37551430
    576093 8siy:F (2.9) BS02 dna ? GO:0000786 ... P02281 37551430
    576094 8siy:G (2.9) BS01 dna ? GO:0000786 ... P84233 37551430
    576095 8siy:G (2.9) BS02 dna ? GO:0000786 ... P84233 37551430
    576096 8siy:H (2.9) BS01 dna ? GO:0000786 ... P62799 37551430
    576097 8siy:H (2.9) BS02 dna ? GO:0000786 ... P62799 37551430
    576098 8siy:I (2.9) BS01 dna ? GO:0000786 ... P06897 37551430
    576099 8siy:I (2.9) BS02 dna ? GO:0000786 ... P06897 37551430
    576100 8siy:J (2.9) BS01 dna ? GO:0000786 ... P02281 37551430
    576101 8siy:J (2.9) BS02 dna ? GO:0000786 ... P02281 37551430
    576102 8sjb:A (1.74) BS01 CA N/A GO:0002523 ... P05109 N/A
    576103 8sjb:A (1.74) BS02 CA N/A GO:0002523 ... P05109 N/A
    576104 8sjb:A (1.74) BS03 ZN N/A GO:0002523 ... P05109 N/A
    576105 8sjb:B (1.74) BS01 CA N/A GO:0002523 ... P05109 N/A
    576106 8sjb:B (1.74) BS02 CA N/A GO:0002523 ... P05109 N/A
    576107 8sjc:A (1.87) BS01 CA N/A GO:0002523 ... P05109 N/A
    576108 8sjc:A (1.87) BS02 CA N/A GO:0002523 ... P05109 N/A
    576109 8sjc:A (1.87) BS03 ZN N/A GO:0002523 ... P05109 N/A
    576110 8sjc:B (1.87) BS01 MG N/A GO:0002523 ... P05109 N/A
    576111 8sjc:B (1.87) BS02 CA N/A GO:0002523 ... P05109 N/A
    576112 8sjc:B (1.87) BS03 ZN N/A GO:0002523 ... P05109 N/A
    576113 8sjc:C (1.87) BS01 MG N/A GO:0002523 ... P06702 N/A
    576114 8sjc:C (1.87) BS02 CA N/A GO:0002523 ... P06702 N/A
    576115 8sjc:C (1.87) BS03 ZN N/A GO:0002523 ... P06702 N/A
    576116 8sjc:D (1.87) BS01 CA N/A GO:0002523 ... P06702 N/A
    576117 8sjc:D (1.87) BS02 CA N/A GO:0002523 ... P06702 N/A
    576118 8sjc:D (1.87) BS03 ZN N/A GO:0002523 ... P06702 N/A
    576119 8sjd:A (5.1) BS01 dna ? GO:0003677 ... Q25438 37491363
    576120 8sjd:A (5.1) BS02 dna ? GO:0003677 ... Q25438 37491363
    576121 8sjd:A (5.1) BS03 dna ? GO:0003677 ... Q25438 37491363
    576122 8sjd:A (5.1) BS04 dna ? GO:0003677 ... Q25438 37491363
    576123 8sjd:B (5.1) BS01 dna ? GO:0003677 ... Q25438 37491363
    576124 8sjd:B (5.1) BS02 dna ? GO:0003677 ... Q25438 37491363
    576125 8sjd:B (5.1) BS03 dna ? GO:0003677 ... Q25438 37491363
    576126 8sjd:B (5.1) BS04 dna ? GO:0003677 ... Q25438 37491363
    576127 8sjd:B (5.1) BS05 dna ? GO:0003677 ... Q25438 37491363
    576128 8sjd:C (5.1) BS01 dna ? GO:0003677 ... Q25438 37491363
    576129 8sjd:C (5.1) BS02 dna ? GO:0003677 ... Q25438 37491363
    576130 8sjd:C (5.1) BS03 dna ? GO:0003677 ... Q25438 37491363
    576131 8sjd:D (5.1) BS01 dna ? GO:0003677 ... Q25438 37491363
    576132 8sjd:D (5.1) BS02 dna ? GO:0003677 ... Q25438 37491363
    576133 8sjd:D (5.1) BS03 dna ? GO:0003677 ... Q25438 37491363
    576134 8sjd:D (5.1) BS04 dna ? GO:0003677 ... Q25438 37491363
    576135 8sjh:A (1.6) BS01 CA N/A GO:0005506 ... N/A 37352018
    576136 8sjh:A (1.6) BS02 CA N/A GO:0005506 ... N/A 37352018
    576137 8sji:A (1.5) BS01 CA N/A GO:0005506 ... N/A 37352018
    576138 8sji:C (1.5) BS01 CA N/A GO:0005506 ... N/A 37352018
    576139 8sjx:A (2.5) BS01 HWP ? GO:0002088 ... Q6J8I9 N/A
    576140 8sjx:A (2.5) BS02 HWP ? GO:0002088 ... Q6J8I9 N/A
    576141 8sjx:A (2.5) BS03 HWP ? GO:0002088 ... Q6J8I9 N/A
    576142 8sjx:A (2.5) BS04 HWP ? GO:0002088 ... Q6J8I9 N/A
    576143 8sjx:A (2.5) BS05 HWP ? GO:0002088 ... Q6J8I9 N/A
    576144 8sjx:A (2.5) BS06 CLR ? GO:0002088 ... Q6J8I9 N/A
    576145 8sjy:A (2.35) BS01 HWP ? GO:0002088 ... Q6J8I9 39222068
    576146 8sjy:A (2.35) BS02 HWP ? GO:0002088 ... Q6J8I9 39222068
    576147 8sjy:A (2.35) BS03 HWP ? GO:0002088 ... Q6J8I9 39222068
    576148 8sjy:A (2.35) BS04 CLR ? GO:0002088 ... Q6J8I9 39222068
    576149 8sjy:A (2.35) BS05 CLR ? GO:0002088 ... Q6J8I9 39222068
    576150 8sjy:A (2.35) BS06 CLR ? GO:0002088 ... Q6J8I9 39222068
    576151 8sko:A (1.3) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 37549809
    576152 8sko:A (1.3) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 37549809
    576153 8sko:A (1.3) BS03 X8Z 3.5.2.6 GO:0008270 ... C7C422 37549809
    576154 8sko:B (1.3) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 37549809
    576155 8sko:B (1.3) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 37549809
    576156 8sko:B (1.3) BS03 X8Z 3.5.2.6 GO:0008270 ... C7C422 37549809
    576157 8skp:A (1.3) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 37549809
    576158 8skp:A (1.3) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 37549809
    576159 8skp:A (1.3) BS03 WAF 3.5.2.6 GO:0008270 ... C7C422 37549809
    576160 8skr:A (2.99) BS01 PLP 2.6.1.1
    2.6.1.7    		 GO:0003723 ... P00505 37839702
    576161 8skr:C (2.99) BS01 PLP 2.6.1.1
    2.6.1.7    		 GO:0003723 ... P00505 37839702
    576162 8sks:A (2.91) BS01 MN 1.15.1.1 GO:0000302 ... P04179 37839702
    576163 8sks:B (2.91) BS01 MN 1.15.1.1 GO:0000302 ... P04179 37839702
    576164 8sks:C (2.91) BS01 MN 1.15.1.1 GO:0000302 ... P04179 37839702
    576165 8sks:D (2.91) BS01 MN 1.15.1.1 GO:0000302 ... P04179 37839702
    576166 8sky:A (2.4) BS01 OXL ? GO:0003824 ... O06724 38047707
    576167 8sky:A (2.4) BS02 MN ? GO:0003824 ... O06724 38047707
    576168 8sky:B (2.4) BS01 OXL ? GO:0003824 ... O06724 38047707
    576169 8sky:B (2.4) BS02 MN ? GO:0003824 ... O06724 38047707
    576170 8sl9:A (1.4) BS01 H73 2.5.1.15
    2.7.6.3    		 GO:0003848 ... Q5NGA7 N/A
    576171 8sld:A (2.85) BS01 MG 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    576172 8slf:A (2.9) BS01 AMP 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    576173 8slf:B (2.9) BS01 AMP 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    576174 8slf:B (2.9) BS02 ZN 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    576175 8slf:B (2.9) BS03 MG 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    576176 8slg:A (1.95) BS01 G5A 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    576177 8slg:A (1.95) BS02 ZN 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    576178 8slg:A (1.95) BS03 MG 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    576179 8slg:B (1.95) BS01 G5A 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    576180 8slg:B (1.95) BS02 ZN 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    576181 8slg:B (1.95) BS03 MG 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    576182 8slh:A (3.05) BS01 AMP 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    576183 8slh:A (3.05) BS02 MG 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    576184 8slx:A (3.23) BS01 P0T ? GO:0005216 ... Q9WUD2 37199723
    576185 8slx:A (3.23) BS02 P0T ? GO:0005216 ... Q9WUD2 37199723
    576186 8slx:B (3.23) BS01 P0T ? GO:0005216 ... Q9WUD2 37199723
    576187 8slx:C (3.23) BS01 P0T ? GO:0005216 ... Q9WUD2 37199723
    576188 8slx:D (3.23) BS01 P0T ? GO:0005216 ... Q9WUD2 37199723
    576189 8slx:D (3.23) BS02 P0T ? GO:0005216 ... Q9WUD2 37199723
    576190 8sly:A (3.32) BS01 P0T ? GO:0005216 ... Q9WUD2 37199723
    576191 8sly:A (3.32) BS02 P0T ? GO:0005216 ... Q9WUD2 37199723
    576192 8sly:A (3.32) BS03 P0T ? GO:0005216 ... Q9WUD2 37199723
    576193 8sly:B (3.32) BS01 P0T ? GO:0005216 ... Q9WUD2 37199723
    576194 8sly:B (3.32) BS02 P0T ? GO:0005216 ... Q9WUD2 37199723
    576195 8sly:B (3.32) BS03 P0T ? GO:0005216 ... Q9WUD2 37199723
    576196 8sly:C (3.32) BS01 P0T ? GO:0005216 ... Q9WUD2 37199723
    576197 8sly:C (3.32) BS02 P0T ? GO:0005216 ... Q9WUD2 37199723
    576198 8sly:C (3.32) BS03 P0T ? GO:0005216 ... Q9WUD2 37199723
    576199 8sly:D (3.32) BS01 P0T ? GO:0005216 ... Q9WUD2 37199723
    576200 8sly:D (3.32) BS02 P0T ? GO:0005216 ... Q9WUD2 37199723
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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