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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    574401 8s91:D (4.3) BS02 ADP 3.6.4.12 GO:0000724 ... Q9NXL9 37309874
    574402 8s91:E (4.3) BS01 ADP 3.6.4.12 GO:0000724 ... Q9NXL9 37309874
    574403 8s91:F (4.3) BS01 ADP 3.6.4.12 GO:0000724 ... Q9NXL9 37309874
    574404 8s94:A (3.94) BS01 ADP 3.6.4.12 GO:0000724 ... Q9UJA3 37309874
    574405 8s94:A (3.94) BS02 MG 3.6.4.12 GO:0000724 ... Q9UJA3 37309874
    574406 8s94:B (3.94) BS01 ADP 3.6.4.12 GO:0000724 ... Q9UJA3 37309874
    574407 8s94:B (3.94) BS02 MG 3.6.4.12 GO:0000724 ... Q9UJA3 37309874
    574408 8s94:C (3.94) BS01 ADP 3.6.4.12 GO:0000724 ... Q9UJA3 37309874
    574409 8s94:C (3.94) BS02 MG 3.6.4.12 GO:0000724 ... Q9UJA3 37309874
    574410 8s94:D (3.94) BS01 ADP 3.6.4.12 GO:0000724 ... Q9NXL9 37309874
    574411 8s94:E (3.94) BS01 ADP 3.6.4.12 GO:0000724 ... Q9NXL9 37309874
    574412 8s94:F (3.94) BS01 ADP 3.6.4.12 GO:0000724 ... Q9NXL9 37309874
    574413 8s96:A (1.68) BS01 ZSF 4.6.1.18 GO:0003676 ... P61823 39071052
    574414 8s96:B (1.68) BS01 ZSF 4.6.1.18 GO:0003676 ... P61823 39071052
    574415 8s9b:A (2.9) BS01 LQO ? GO:0001518 ... Q15858 37270609
    574416 8s9b:A (2.9) BS02 LQO ? GO:0001518 ... Q15858 37270609
    574417 8s9b:A (2.9) BS03 P5S ? GO:0001518 ... Q15858 37270609
    574418 8s9b:A (2.9) BS04 Y01 ? GO:0001518 ... Q15858 37270609
    574419 8s9b:A (2.9) BS05 Y01 ? GO:0001518 ... Q15858 37270609
    574420 8s9b:A (2.9) BS06 Y01 ? GO:0001518 ... Q15858 37270609
    574421 8s9b:A (2.9) BS07 LPE ? GO:0001518 ... Q15858 37270609
    574422 8s9b:A (2.9) BS08 LPE ? GO:0001518 ... Q15858 37270609
    574423 8s9b:A (2.9) BS09 P5S ? GO:0001518 ... Q15858 37270609
    574424 8s9b:A (2.9) BS10 LPE ? GO:0001518 ... Q15858 37270609
    574425 8s9b:A (2.9) BS11 LPE ? GO:0001518 ... Q15858 37270609
    574426 8s9b:A (2.9) BS12 LPE ? GO:0001518 ... Q15858 37270609
    574427 8s9b:A (2.9) BS13 LPE ? GO:0001518 ... Q15858 37270609
    574428 8s9b:A (2.9) BS14 Y01 ? GO:0001518 ... Q15858 37270609
    574429 8s9c:A (3.2) BS01 N6W ? GO:0001518 ... Q15858 37270609
    574430 8s9c:A (3.2) BS02 P5S ? GO:0001518 ... Q15858 37270609
    574431 8s9c:A (3.2) BS03 Y01 ? GO:0001518 ... Q15858 37270609
    574432 8s9c:A (3.2) BS04 Y01 ? GO:0001518 ... Q15858 37270609
    574433 8s9c:A (3.2) BS05 Y01 ? GO:0001518 ... Q15858 37270609
    574434 8s9c:A (3.2) BS06 LPE ? GO:0001518 ... Q15858 37270609
    574435 8s9c:A (3.2) BS07 LPE ? GO:0001518 ... Q15858 37270609
    574436 8s9c:A (3.2) BS08 P5S ? GO:0001518 ... Q15858 37270609
    574437 8s9c:A (3.2) BS09 LPE ? GO:0001518 ... Q15858 37270609
    574438 8s9c:A (3.2) BS10 LPE ? GO:0001518 ... Q15858 37270609
    574439 8s9c:A (3.2) BS11 LPE ? GO:0001518 ... Q15858 37270609
    574440 8s9c:A (3.2) BS12 LPE ? GO:0001518 ... Q15858 37270609
    574441 8s9c:A (3.2) BS13 LPE ? GO:0001518 ... Q15858 37270609
    574442 8s9c:A (3.2) BS14 LPE ? GO:0001518 ... Q15858 37270609
    574443 8s9c:A (3.2) BS15 P5S ? GO:0001518 ... Q15858 37270609
    574444 8s9c:A (3.2) BS16 Y01 ? GO:0001518 ... Q15858 37270609
    574445 8s9c:A (3.2) BS17 LPE ? GO:0001518 ... Q15858 37270609
    574446 8s9c:B (3.2) BS01 LPE ? GO:0001518 ... Q07699 37270609
    574447 8s9d:A (2.57) BS01 FLC 2.3.3.16 GO:0004108 ... P9WPD3 37252106
    574448 8s9h:A (2.437) BS01 ZWV ? GO:0002224 ... B3Y653 38352849
    574449 8s9h:A (2.437) BS02 ZWV ? GO:0002224 ... B3Y653 38352849
    574450 8s9h:B (2.437) BS01 ZWV ? GO:0002224 ... B3Y653 38352849
    574451 8s9h:B (2.437) BS02 ZWV ? GO:0002224 ... B3Y653 38352849
    574452 8s9w:A (1.69) BS01 CA ? GO:0005509 ... Q6S5I3 37769710
    574453 8s9w:A (1.69) BS02 CA ? GO:0005509 ... Q6S5I3 37769710
    574454 8s9w:B (1.69) BS01 CA ? GO:0005509 ... Q6S5I3 37769710
    574455 8s9w:B (1.69) BS02 CA ? GO:0005509 ... Q6S5I3 37769710
    574456 8saf:A (1.23) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    574457 8saf:A (1.23) BS02 ZUJ 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    574458 8sag:A (1.52) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    574459 8sag:A (1.52) BS02 ZUS 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    574460 8sai:A (3.27) BS01 S12 ? GO:0004930 ... Q9UPC5 37733739
    574461 8sak:A (3.0) BS01 FUC ? GO:0005515 ... A0A2R4KP93 37756379
    574462 8sbb:A (3.59) BS01 FE ? GO:0004497 ... A0A1I2KHB9 37069165
    574463 8sbb:A (3.59) BS02 FE ? GO:0004497 ... A0A1I2KHB9 37069165
    574464 8sbc:A (2.3) BS01 ZTV 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 37399505
    574465 8sbj:A (3.1) BS01 ZUO 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 37399505
    574466 8sbr:A (2.59) BS01 CTP 6.3.4.2 GO:0000287 ... P0A7E5 37106216
    574467 8sbr:A (2.59) BS02 CTP 6.3.4.2 GO:0000287 ... P0A7E5 37106216
    574468 8sbr:B (2.59) BS01 CTP 6.3.4.2 GO:0000287 ... P0A7E5 37106216
    574469 8sbr:B (2.59) BS02 CTP 6.3.4.2 GO:0000287 ... P0A7E5 37106216
    574470 8sbu:A (2.2) BS01 GLC N/A GO:0000287 ... P0AEX9
    Q59028    		 N/A
    574471 8sbu:A (2.2) BS02 GLC N/A GO:0000287 ... P0AEX9
    Q59028    		 N/A
    574472 8sbu:B (2.2) BS01 GLC N/A GO:0000287 ... P0AEX9
    Q59028    		 N/A
    574473 8sbu:B (2.2) BS02 GLC N/A GO:0000287 ... P0AEX9
    Q59028    		 N/A
    574474 8sc2:A (3.36) BS01 C9F ? GO:0005277 ... O15245 37821493
    574475 8sc3:A (3.24) BS01 ZVJ ? GO:0005277 ... O15245 37821493
    574476 8sc6:A (3.13) BS01 VIB ? GO:0005277 ... O15245 37821493
    574477 8scb:A (2.5) BS01 rna ? GO:0002181 ... G1TT27 38172604
    574478 8scb:A (2.5) BS02 MG ? GO:0002181 ... G1TT27 38172604
    574479 8scb:A (2.5) BS03 MG ? GO:0002181 ... G1TT27 38172604
    574480 8scb:AA (2.5) BS01 rna ? GO:0000028 ... G1TLT8 38172604
    574481 8scb:B (2.5) BS01 rna ? GO:0003723 ... G1TL06 38172604
    574482 8scb:B (2.5) BS02 MG ? GO:0003723 ... G1TL06 38172604
    574483 8scb:BB (2.5) BS01 rna ? GO:0003735 ... G1SS70 38172604
    574484 8scb:C (2.5) BS01 rna ? GO:0003723 ... G1SVW5 38172604
    574485 8scb:C (2.5) BS02 rna ? GO:0003723 ... G1SVW5 38172604
    574486 8scb:CC (2.5) BS01 rna N/A GO:0003723 ... N/A 38172604
    574487 8scb:D (2.5) BS01 rna ? GO:0000027 ... P19949 38172604
    574488 8scb:D (2.5) BS02 rna ? GO:0000027 ... P19949 38172604
    574489 8scb:DD (2.5) BS01 rna 4.2.99.18 GO:0003677 ... G1TNM3 38172604
    574490 8scb:E (2.5) BS01 rna ? GO:0000027 ... G1SKF7 38172604
    574491 8scb:EE (2.5) BS01 rna ? GO:0003723 ... G1TK17 38172604
    574492 8scb:EE (2.5) BS02 MG ? GO:0003723 ... G1TK17 38172604
    574493 8scb:F (2.5) BS01 rna ? GO:0000463 ... G1TUB1 38172604
    574494 8scb:F (2.5) BS02 rna ? GO:0000463 ... G1TUB1 38172604
    574495 8scb:FF (2.5) BS01 rna ? GO:0000028 ... G1TFM5 38172604
    574496 8scb:FF (2.5) BS02 rna ? GO:0000028 ... G1TFM5 38172604
    574497 8scb:G (2.5) BS01 rna ? GO:0000470 ... G1STW0 38172604
    574498 8scb:G (2.5) BS02 rna ? GO:0000470 ... G1STW0 38172604
    574499 8scb:GG (2.5) BS01 rna ? GO:0000082 ... G1TM55 38172604
    574500 8scb:H (2.5) BS01 rna ? GO:0002181 ... G1SWI6 38172604
    574501 8scb:HH (2.5) BS01 rna ? GO:0003735 ... G1SVB0 38172604
    574502 8scb:I (2.5) BS01 rna ? GO:0000027 ... B7NZQ2 38172604
    574503 8scb:I (2.5) BS02 rna ? GO:0000027 ... B7NZQ2 38172604
    574504 8scb:I (2.5) BS03 MG ? GO:0000027 ... B7NZQ2 38172604
    574505 8scb:II (2.5) BS01 rna ? GO:0000462 ... G1TJW1 38172604
    574506 8scb:II (2.5) BS02 rna ? GO:0000462 ... G1TJW1 38172604
    574507 8scb:J (2.5) BS01 rna ? GO:0003723 ... G1TUB8 38172604
    574508 8scb:J (2.5) BS02 rna ? GO:0003723 ... G1TUB8 38172604
    574509 8scb:J (2.5) BS03 rna ? GO:0003723 ... G1TUB8 38172604
    574510 8scb:JJ (2.5) BS01 rna ? GO:0003723 ... B7NZS8 38172604
    574511 8scb:KK (2.5) BS01 rna ? GO:0003723 ... G1TPV3 38172604
    574512 8scb:L (2.5) BS01 rna N/A GO:0003735 ... N/A 38172604
    574513 8scb:L (2.5) BS02 rna N/A GO:0003735 ... N/A 38172604
    574514 8scb:LL (2.5) BS01 rna ? GO:0003735 ... G1TRM4 38172604
    574515 8scb:LL (2.5) BS02 MG ? GO:0003735 ... G1TRM4 38172604
    574516 8scb:M (2.5) BS01 rna ? GO:0003723 ... G1SZ12 38172604
    574517 8scb:MM (2.5) BS01 rna ? GO:0003735 ... G1SFR8 38172604
    574518 8scb:N (2.5) BS01 rna ? GO:0002181 ... G1T0C1 38172604
    574519 8scb:N (2.5) BS02 rna ? GO:0002181 ... G1T0C1 38172604
    574520 8scb:NN (2.5) BS01 rna ? GO:0003735 ... G1SP51 38172604
    574521 8scb:O (2.5) BS01 rna N/A GO:0003735 ... N/A 38172604
    574522 8scb:OO (2.5) BS01 rna ? GO:0000028 ... G1T1F0 38172604
    574523 8scb:OO (2.5) BS02 MG ? GO:0000028 ... G1T1F0 38172604
    574524 8scb:P (2.5) BS01 peptide ? GO:0002181 ... G1SCJ6 38172604
    574525 8scb:P (2.5) BS02 rna ? GO:0002181 ... G1SCJ6 38172604
    574526 8scb:P (2.5) BS03 rna ? GO:0002181 ... G1SCJ6 38172604
    574527 8scb:PP (2.5) BS01 rna ? GO:0000028 ... G1U0Q2 38172604
    574528 8scb:Q (2.5) BS01 rna ? GO:0002181 ... G1TFE0 38172604
    574529 8scb:QQ (2.5) BS01 rna ? GO:0000462 ... G1SGX4 38172604
    574530 8scb:R (2.5) BS01 rna ? GO:0003723 ... G1TJR3 38172604
    574531 8scb:R (2.5) BS02 rna ? GO:0003723 ... G1TJR3 38172604
    574532 8scb:RR (2.5) BS01 rna ? GO:0003735 ... G1TU13 38172604
    574533 8scb:S (2.5) BS01 rna N/A GO:0003735 ... N/A 38172604
    574534 8scb:S (2.5) BS02 rna N/A GO:0003735 ... N/A 38172604
    574535 8scb:SS (2.5) BS01 rna ? GO:0003676 ... G1TPG3 38172604
    574536 8scb:T (2.5) BS01 rna ? GO:0003735 ... G1SHQ2 38172604
    574537 8scb:T (2.5) BS02 rna ? GO:0003735 ... G1SHQ2 38172604
    574538 8scb:TT (2.5) BS01 rna ? GO:0000028 ... G1TN62 38172604
    574539 8scb:U (2.5) BS01 rna ? GO:0002181 ... G1TSG1 38172604
    574540 8scb:UU (2.5) BS01 rna ? GO:0003723 ... G1SIZ2 38172604
    574541 8scb:V (2.5) BS01 rna ? GO:0000122 ... G1T6D1 38172604
    574542 8scb:V (2.5) BS02 MG ? GO:0000122 ... G1T6D1 38172604
    574543 8scb:W (2.5) BS01 rna ? GO:0000027 ... G1SE28 38172604
    574544 8scb:WW (2.5) BS01 rna ? GO:0003735 ... G1TG89 38172604
    574545 8scb:X (2.5) BS01 rna ? GO:0000027 ... G1SE76 38172604
    574546 8scb:X (2.5) BS02 rna ? GO:0000027 ... G1SE76 38172604
    574547 8scb:XX (2.5) BS01 rna ? GO:0003735 ... G1SZ47 38172604
    574548 8scb:Y (2.5) BS01 rna ? GO:0002181 ... G1SQH0 38172604
    574549 8scb:Y (2.5) BS02 rna ? GO:0002181 ... G1SQH0 38172604
    574550 8scb:YY (2.5) BS01 rna ? GO:0003735 ... G1T3D8 38172604
    574551 8scb:Z (2.5) BS01 rna ? GO:0003735 ... G1TXF6 38172604
    574552 8scb:ZZ (2.5) BS01 rna ? GO:0003735 ... G1TDB3 38172604
    574553 8scb:a (2.5) BS01 rna ? GO:0003735 ... G1SNY0 38172604
    574554 8scb:aa (2.5) BS01 rna ? GO:0003729 ... G1TFE8 38172604
    574555 8scb:aa (2.5) BS02 ZN ? GO:0003729 ... G1TFE8 38172604
    574556 8scb:b (2.5) BS01 rna ? GO:0002181 ... G1SGR6 38172604
    574557 8scb:bb (2.5) BS01 rna ? GO:0000028 ... G1TZ76 38172604
    574558 8scb:c (2.5) BS01 rna ? GO:0002181 ... G1TDL2 38172604
    574559 8scb:cc (2.5) BS01 rna ? GO:0000028 ... G1TIB4 38172604
    574560 8scb:d (2.5) BS01 rna ? GO:0002181 ... G1SHG0 38172604
    574561 8scb:dd (2.5) BS01 rna ? GO:0003735 ... G1U7M4 38172604
    574562 8scb:dd (2.5) BS02 ZN ? GO:0003735 ... G1U7M4 38172604
    574563 8scb:e (2.5) BS01 rna ? GO:0003735 ... G1TUN8 38172604
    574564 8scb:e (2.5) BS02 MG ? GO:0003735 ... G1TUN8 38172604
    574565 8scb:ee (2.5) BS01 rna ? GO:0003735 ... G1T8A2 38172604
    574566 8scb:f (2.5) BS01 rna ? GO:0000049 ... G1SF08 38172604
    574567 8scb:f (2.5) BS02 MG ? GO:0000049 ... G1SF08 38172604
    574568 8scb:ff (2.5) BS01 rna ? GO:0003723 ... G1SK22 38172604
    574569 8scb:ff (2.5) BS02 ZN ? GO:0003723 ... G1SK22 38172604
    574570 8scb:g (2.5) BS01 rna ? GO:0003735 ... G1TXG5 38172604
    574571 8scb:g (2.5) BS02 ZN ? GO:0003735 ... G1TXG5 38172604
    574572 8scb:g (2.5) BS03 MG ? GO:0003735 ... G1TXG5 38172604
    574573 8scb:gg (2.5) BS01 rna ? GO:0001891 ... G1SJB4 38172604
    574574 8scb:h (2.5) BS01 rna ? GO:0000463 ... G1SIT5 38172604
    574575 8scb:h (2.5) BS02 rna ? GO:0000463 ... G1SIT5 38172604
    574576 8scb:i (2.5) BS01 rna ? GO:0002181 ... G1TTQ5 38172604
    574577 8scb:ii (2.5) BS01 rna ? GO:0000184 ... P62495 38172604
    574578 8scb:ii (2.5) BS02 rna ? GO:0000184 ... P62495 38172604
    574579 8scb:ii (2.5) BS03 rna ? GO:0000184 ... P62495 38172604
    574580 8scb:ii (2.5) BS04 rna ? GO:0000184 ... P62495 38172604
    574581 8scb:ii (2.5) BS05 ZVM ? GO:0000184 ... P62495 38172604
    574582 8scb:j (2.5) BS01 rna ? GO:0003723 ... U3KPD5 38172604
    574583 8scb:j (2.5) BS02 rna ? GO:0003723 ... U3KPD5 38172604
    574584 8scb:j (2.5) BS03 ZN ? GO:0003723 ... U3KPD5 38172604
    574585 8scb:k (2.5) BS01 rna ? GO:0003735 ... G1U001 38172604
    574586 8scb:l (2.5) BS01 rna ? GO:0003735 ... G1TTN1 38172604
    574587 8scb:l (2.5) BS02 rna ? GO:0003735 ... G1TTN1 38172604
    574588 8scb:m (2.5) BS01 rna ? GO:0003735 ... A0A2K5PSA0 38172604
    574589 8scb:m (2.5) BS02 ZN ? GO:0003735 ... A0A2K5PSA0 38172604
    574590 8scb:o (2.5) BS01 rna ? GO:0003735 ... G1T040 38172604
    574591 8scb:o (2.5) BS02 rna ? GO:0003735 ... G1T040 38172604
    574592 8scb:o (2.5) BS03 ZN ? GO:0003735 ... G1T040 38172604
    574593 8scb:p (2.5) BS01 rna ? GO:0003735 ... G1SY53 38172604
    574594 8scb:p (2.5) BS02 ZN ? GO:0003735 ... G1SY53 38172604
    574595 8scb:r (2.5) BS01 rna ? GO:0003735 ... G1U7L1 38172604
    574596 8scb:s (2.5) BS01 rna ? GO:0000027 ... G1SPK4 38172604
    574597 8scb:t (2.5) BS01 rna ? GO:0003723 ... G1SMR7 38172604
    574598 8scd:A (2.06) BS01 XHP 2.5.1.15 GO:0004156 ... Q8GJ22 37419898
    574599 8scd:A (2.06) BS02 PAB 2.5.1.15 GO:0004156 ... Q8GJ22 37419898
    574600 8scd:A (2.06) BS03 POP 2.5.1.15 GO:0004156 ... Q8GJ22 37419898
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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