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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    572801 8rfo:A (1.19) BS03 CU N/A GO:0016491 ... Q89EJ6 39002715
    572802 8rfo:A (1.19) BS04 NO2 N/A GO:0016491 ... Q89EJ6 39002715
    572803 8rfo:A (1.19) BS05 NO2 N/A GO:0016491 ... Q89EJ6 39002715
    572804 8rfp:A (1.23) BS01 FRU N/A GO:0016491 ... Q89EJ6 39002715
    572805 8rfp:A (1.23) BS02 CU N/A GO:0016491 ... Q89EJ6 39002715
    572806 8rfp:A (1.23) BS03 CU N/A GO:0016491 ... Q89EJ6 39002715
    572807 8rfp:A (1.23) BS04 NO2 N/A GO:0016491 ... Q89EJ6 39002715
    572808 8rfp:A (1.23) BS05 NO2 N/A GO:0016491 ... Q89EJ6 39002715
    572809 8rfp:A (1.23) BS06 NO N/A GO:0016491 ... Q89EJ6 39002715
    572810 8rfq:A (1.32) BS01 FRU N/A GO:0016491 ... Q89EJ6 39002715
    572811 8rfq:A (1.32) BS02 CU N/A GO:0016491 ... Q89EJ6 39002715
    572812 8rfq:A (1.32) BS03 CU N/A GO:0016491 ... Q89EJ6 39002715
    572813 8rfq:A (1.32) BS04 NO2 N/A GO:0016491 ... Q89EJ6 39002715
    572814 8rfq:A (1.32) BS05 NO N/A GO:0016491 ... Q89EJ6 39002715
    572815 8rfr:A (1.4) BS01 FRU N/A GO:0016491 ... Q89EJ6 39002715
    572816 8rfr:A (1.4) BS02 CU N/A GO:0016491 ... Q89EJ6 39002715
    572817 8rfr:A (1.4) BS03 CU N/A GO:0016491 ... Q89EJ6 39002715
    572818 8rfr:A (1.4) BS04 NO2 N/A GO:0016491 ... Q89EJ6 39002715
    572819 8rfr:A (1.4) BS05 NO N/A GO:0016491 ... Q89EJ6 39002715
    572820 8rfs:A (1.54) BS01 FRU N/A GO:0016491 ... Q89EJ6 39002715
    572821 8rfs:A (1.54) BS02 CU N/A GO:0016491 ... Q89EJ6 39002715
    572822 8rfs:A (1.54) BS03 CU N/A GO:0016491 ... Q89EJ6 39002715
    572823 8rft:A (1.7) BS01 FRU N/A GO:0016491 ... Q89EJ6 39002715
    572824 8rft:A (1.7) BS02 CU N/A GO:0016491 ... Q89EJ6 39002715
    572825 8rft:A (1.7) BS03 CU N/A GO:0016491 ... Q89EJ6 39002715
    572826 8rfu:A (2.18) BS01 FRU N/A GO:0016491 ... Q89EJ6 39002715
    572827 8rfu:A (2.18) BS02 CU N/A GO:0016491 ... Q89EJ6 39002715
    572828 8rfu:A (2.18) BS03 CU N/A GO:0016491 ... Q89EJ6 39002715
    572829 8rfu:A (2.18) BS04 NO2 N/A GO:0016491 ... Q89EJ6 39002715
    572830 8rfv:A (1.31) BS01 CU N/A GO:0016491 ... H0SLX7 39002715
    572831 8rfv:A (1.31) BS02 CU N/A GO:0016491 ... H0SLX7 39002715
    572832 8rfw:A (1.33) BS01 CU N/A GO:0016491 ... H0SLX7 39002715
    572833 8rfw:A (1.33) BS02 CU N/A GO:0016491 ... H0SLX7 39002715
    572834 8rfx:A (1.4) BS01 CU N/A GO:0016491 ... H0SLX7 39002715
    572835 8rfx:A (1.4) BS02 CU N/A GO:0016491 ... H0SLX7 39002715
    572836 8rfy:A (1.79) BS01 CU N/A GO:0016491 ... H0SLX7 39002715
    572837 8rfy:A (1.79) BS02 CU N/A GO:0016491 ... H0SLX7 39002715
    572838 8rg8:A (1.21) BS01 GLC N/A GO:0016491 ... H0SLX7 39002715
    572839 8rg8:A (1.21) BS02 GLC N/A GO:0016491 ... H0SLX7 39002715
    572840 8rg8:A (1.21) BS03 GLC N/A GO:0016491 ... H0SLX7 39002715
    572841 8rg8:A (1.21) BS04 FRU N/A GO:0016491 ... H0SLX7 39002715
    572842 8rg8:A (1.21) BS05 CU N/A GO:0016491 ... H0SLX7 39002715
    572843 8rg8:A (1.21) BS06 CU N/A GO:0016491 ... H0SLX7 39002715
    572844 8rg8:A (1.21) BS07 NO2 N/A GO:0016491 ... H0SLX7 39002715
    572845 8rg8:A (1.21) BS08 NO2 N/A GO:0016491 ... H0SLX7 39002715
    572846 8rg8:A (1.21) BS09 NO2 N/A GO:0016491 ... H0SLX7 39002715
    572847 8rg8:A (1.21) BS10 NO N/A GO:0016491 ... H0SLX7 39002715
    572848 8rg9:A (1.25) BS01 GLC N/A GO:0016491 ... H0SLX7 39002715
    572849 8rg9:A (1.25) BS02 GLC N/A GO:0016491 ... H0SLX7 39002715
    572850 8rg9:A (1.25) BS03 GLC N/A GO:0016491 ... H0SLX7 39002715
    572851 8rg9:A (1.25) BS04 FRU N/A GO:0016491 ... H0SLX7 39002715
    572852 8rg9:A (1.25) BS05 CU N/A GO:0016491 ... H0SLX7 39002715
    572853 8rg9:A (1.25) BS06 CU N/A GO:0016491 ... H0SLX7 39002715
    572854 8rg9:A (1.25) BS07 NO2 N/A GO:0016491 ... H0SLX7 39002715
    572855 8rg9:A (1.25) BS08 NO2 N/A GO:0016491 ... H0SLX7 39002715
    572856 8rg9:A (1.25) BS09 NO2 N/A GO:0016491 ... H0SLX7 39002715
    572857 8rg9:A (1.25) BS10 NO N/A GO:0016491 ... H0SLX7 39002715
    572858 8rgb:A (1.39) BS01 GLC N/A GO:0016491 ... H0SLX7 39002715
    572859 8rgb:A (1.39) BS02 GLC N/A GO:0016491 ... H0SLX7 39002715
    572860 8rgb:A (1.39) BS03 GLC N/A GO:0016491 ... H0SLX7 39002715
    572861 8rgb:A (1.39) BS04 FRU N/A GO:0016491 ... H0SLX7 39002715
    572862 8rgb:A (1.39) BS05 CU N/A GO:0016491 ... H0SLX7 39002715
    572863 8rgb:A (1.39) BS06 CU N/A GO:0016491 ... H0SLX7 39002715
    572864 8rgb:A (1.39) BS07 NO2 N/A GO:0016491 ... H0SLX7 39002715
    572865 8rgb:A (1.39) BS08 NO2 N/A GO:0016491 ... H0SLX7 39002715
    572866 8rgb:A (1.39) BS09 NO N/A GO:0016491 ... H0SLX7 39002715
    572867 8rgb:A (1.39) BS10 NO N/A GO:0016491 ... H0SLX7 39002715
    572868 8rgc:A (1.55) BS01 GLC N/A GO:0016491 ... H0SLX7 39002715
    572869 8rgc:A (1.55) BS02 FRU N/A GO:0016491 ... H0SLX7 39002715
    572870 8rgc:A (1.55) BS03 GLC N/A GO:0016491 ... H0SLX7 39002715
    572871 8rgc:A (1.55) BS04 GLC N/A GO:0016491 ... H0SLX7 39002715
    572872 8rgc:A (1.55) BS05 FRU N/A GO:0016491 ... H0SLX7 39002715
    572873 8rgc:A (1.55) BS06 CU N/A GO:0016491 ... H0SLX7 39002715
    572874 8rgc:A (1.55) BS07 CU N/A GO:0016491 ... H0SLX7 39002715
    572875 8rgc:A (1.55) BS08 NO2 N/A GO:0016491 ... H0SLX7 39002715
    572876 8rgc:A (1.55) BS09 NO2 N/A GO:0016491 ... H0SLX7 39002715
    572877 8rgc:A (1.55) BS10 NO N/A GO:0016491 ... H0SLX7 39002715
    572878 8rgd:A (1.71) BS01 GLC N/A GO:0016491 ... H0SLX7 39002715
    572879 8rgd:A (1.71) BS02 GLC N/A GO:0016491 ... H0SLX7 39002715
    572880 8rgd:A (1.71) BS03 GLC N/A GO:0016491 ... H0SLX7 39002715
    572881 8rgd:A (1.71) BS04 FRU N/A GO:0016491 ... H0SLX7 39002715
    572882 8rgd:A (1.71) BS05 CU N/A GO:0016491 ... H0SLX7 39002715
    572883 8rgd:A (1.71) BS06 CU N/A GO:0016491 ... H0SLX7 39002715
    572884 8rgd:A (1.71) BS07 NO2 N/A GO:0016491 ... H0SLX7 39002715
    572885 8rgd:A (1.71) BS08 NO2 N/A GO:0016491 ... H0SLX7 39002715
    572886 8rgd:A (1.71) BS09 NO N/A GO:0016491 ... H0SLX7 39002715
    572887 8rgd:A (1.71) BS10 NO N/A GO:0016491 ... H0SLX7 39002715
    572888 8rgh:A (3.9) BS01 peptide 2.1.1.63 GO:0001822 ... P16455
    Q8NCM8
    38454149
    572889 8rgh:C (3.9) BS01 peptide ? GO:0000242 ... Q8WVS4 38454149
    572890 8rgp:1 (3.0) BS01 FMN 7.1.1.2 GO:0005515 ... Q91YT0 38575788
    572891 8rgp:1 (3.0) BS02 SF4 7.1.1.2 GO:0005515 ... Q91YT0 38575788
    572892 8rgp:2 (3.0) BS01 FES 7.1.1.2 GO:0005739 ... Q9D6J6 38575788
    572893 8rgp:3 (3.0) BS01 SF4 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    572894 8rgp:3 (3.0) BS02 SF4 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    572895 8rgp:3 (3.0) BS03 FES 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    572896 8rgp:6 (3.0) BS01 SF4 7.1.1.2 GO:0003954 ... Q9DC70 38575788
    572897 8rgp:6 (3.0) BS02 UQ 7.1.1.2 GO:0003954 ... Q9DC70 38575788
    572898 8rgp:7 (3.0) BS01 ZN ? GO:0001822 ... P52503 38575788
    572899 8rgp:9 (3.0) BS01 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 38575788
    572900 8rgp:9 (3.0) BS02 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 38575788
    572901 8rgp:D (3.0) BS01 SF4 7.1.1.2 GO:0003954 ... Q91WD5 38575788
    572902 8rgp:D (3.0) BS02 UQ 7.1.1.2 GO:0003954 ... Q91WD5 38575788
    572903 8rgp:H (3.0) BS01 UQ 7.1.1.2 GO:0001666 ... P03888 38575788
    572904 8rgp:O (3.0) BS01 DGT ? GO:0005739 ... Q99LC3 38575788
    572905 8rgp:P (3.0) BS01 NDP ? GO:0003954 ... Q9DC69 38575788
    572906 8rgp:W (3.0) BS01 ZMP ? GO:0003674 ... Q9CQZ5 38575788
    572907 8rgp:n (3.0) BS01 ZMP ? GO:0005739 ... Q9CQJ8 38575788
    572908 8rgq:1 (3.0) BS01 FMN 7.1.1.2 GO:0005515 ... Q91YT0 38575788
    572909 8rgq:1 (3.0) BS02 SF4 7.1.1.2 GO:0005515 ... Q91YT0 38575788
    572910 8rgq:2 (3.0) BS01 FES 7.1.1.2 GO:0005739 ... Q9D6J6 38575788
    572911 8rgq:3 (3.0) BS01 SF4 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    572912 8rgq:3 (3.0) BS02 SF4 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    572913 8rgq:3 (3.0) BS03 FES 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    572914 8rgq:6 (3.0) BS01 SF4 7.1.1.2 GO:0003954 ... Q9DC70 38575788
    572915 8rgq:7 (3.0) BS01 ZN ? GO:0001822 ... P52503 38575788
    572916 8rgq:9 (3.0) BS01 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 38575788
    572917 8rgq:9 (3.0) BS02 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 38575788
    572918 8rgq:D (3.0) BS01 SF4 7.1.1.2 GO:0003954 ... Q91WD5 38575788
    572919 8rgq:O (3.0) BS01 DGT ? GO:0005739 ... Q99LC3 38575788
    572920 8rgq:P (3.0) BS01 NDP ? GO:0003954 ... Q9DC69 38575788
    572921 8rgq:W (3.0) BS01 ZMP ? GO:0003674 ... Q9CQZ5 38575788
    572922 8rgq:n (3.0) BS01 ZMP ? GO:0005739 ... Q9CQJ8 38575788
    572923 8rgr:1 (2.9) BS01 FMN 7.1.1.2 GO:0005515 ... Q91YT0 38575788
    572924 8rgr:1 (2.9) BS02 SF4 7.1.1.2 GO:0005515 ... Q91YT0 38575788
    572925 8rgr:2 (2.9) BS01 FES 7.1.1.2 GO:0005739 ... Q9D6J6 38575788
    572926 8rgr:3 (2.9) BS01 SF4 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    572927 8rgr:3 (2.9) BS02 SF4 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    572928 8rgr:3 (2.9) BS03 FES 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    572929 8rgr:6 (2.9) BS01 SF4 7.1.1.2 GO:0003954 ... Q9DC70 38575788
    572930 8rgr:6 (2.9) BS02 UQ 7.1.1.2 GO:0003954 ... Q9DC70 38575788
    572931 8rgr:7 (2.9) BS01 ZN ? GO:0001822 ... P52503 38575788
    572932 8rgr:9 (2.9) BS01 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 38575788
    572933 8rgr:9 (2.9) BS02 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 38575788
    572934 8rgr:D (2.9) BS01 SF4 7.1.1.2 GO:0003954 ... Q91WD5 38575788
    572935 8rgr:D (2.9) BS02 UQ 7.1.1.2 GO:0003954 ... Q91WD5 38575788
    572936 8rgr:H (2.9) BS01 UQ 7.1.1.2 GO:0001666 ... P03888 38575788
    572937 8rgr:O (2.9) BS01 DGT ? GO:0005739 ... Q99LC3 38575788
    572938 8rgr:P (2.9) BS01 NDP ? GO:0003954 ... Q9DC69 38575788
    572939 8rgr:W (2.9) BS01 ZMP ? GO:0003674 ... Q9CQZ5 38575788
    572940 8rgr:n (2.9) BS01 ZMP ? GO:0005739 ... Q9CQJ8 38575788
    572941 8rgt:1 (3.1) BS01 FMN 7.1.1.2 GO:0005515 ... Q91YT0 38575788
    572942 8rgt:1 (3.1) BS02 SF4 7.1.1.2 GO:0005515 ... Q91YT0 38575788
    572943 8rgt:2 (3.1) BS01 FES 7.1.1.2 GO:0005739 ... Q9D6J6 38575788
    572944 8rgt:3 (3.1) BS01 SF4 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    572945 8rgt:3 (3.1) BS02 SF4 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    572946 8rgt:3 (3.1) BS03 FES 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    572947 8rgt:6 (3.1) BS01 SF4 7.1.1.2 GO:0003954 ... Q9DC70 38575788
    572948 8rgt:7 (3.1) BS01 ZN ? GO:0001822 ... P52503 38575788
    572949 8rgt:9 (3.1) BS01 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 38575788
    572950 8rgt:9 (3.1) BS02 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 38575788
    572951 8rgt:D (3.1) BS01 SF4 7.1.1.2 GO:0003954 ... Q91WD5 38575788
    572952 8rgt:O (3.1) BS01 DGT ? GO:0005739 ... Q99LC3 38575788
    572953 8rgt:P (3.1) BS01 NDP ? GO:0003954 ... Q9DC69 38575788
    572954 8rgt:T (3.1) BS01 ZMP ? GO:0005654 ... Q9CR21 38575788
    572955 8rgt:W (3.1) BS01 ZMP ? GO:0003674 ... Q9CQZ5 38575788
    572956 8rgt:n (3.1) BS01 ZMP ? GO:0005739 ... Q9CQJ8 38575788
    572957 8rhe:A (1.95) BS01 BLG 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    572958 8rhe:A (1.95) BS02 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    572959 8rhe:A (1.95) BS03 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    572960 8rhe:A (1.95) BS04 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    572961 8rhe:B (1.95) BS01 BLG 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    572962 8rhe:B (1.95) BS02 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    572963 8rhe:B (1.95) BS03 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    572964 8rhe:B (1.95) BS04 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    572965 8rhf:A (1.95) BS01 BLG 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    572966 8rhf:A (1.95) BS02 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    572967 8rhf:A (1.95) BS03 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    572968 8rhf:A (1.95) BS04 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    572969 8rhf:B (1.95) BS01 BLG 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    572970 8rhf:B (1.95) BS02 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    572971 8rhf:B (1.95) BS03 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    572972 8rhf:B (1.95) BS04 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    572973 8rhi:A (1.98) BS01 BLG 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    572974 8rhi:A (1.98) BS02 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    572975 8rhi:A (1.98) BS03 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    572976 8rhi:A (1.98) BS04 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    572977 8rhi:A (1.98) BS05 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    572978 8rhi:B (1.98) BS01 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    572979 8rhi:B (1.98) BS02 BLG 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    572980 8rhi:B (1.98) BS03 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    572981 8rhi:B (1.98) BS04 ZN 4.2.2.- GO:0000270 ... Q9I2T2 38583835
    572982 8rhj:G (3.05) BS01 MG ? GO:0000502 ... P21243 38628795
    572983 8rhj:H (3.05) BS01 peptide 3.4.25.1 GO:0004298 ... P25043 38628795
    572984 8rhj:H (3.05) BS02 peptide 3.4.25.1 GO:0004298 ... P25043 38628795
    572985 8rhj:K (3.05) BS01 peptide 3.4.25.1 GO:0004298 ... P30656 38628795
    572986 8rhj:K (3.05) BS02 MG 3.4.25.1 GO:0004298 ... P30656 38628795
    572987 8rhj:L (3.05) BS01 peptide ? GO:0000502 ... P23724 38628795
    572988 8rhj:N (3.05) BS01 peptide 3.4.25.1 GO:0000502 ... P38624 38628795
    572989 8rhj:V (3.05) BS01 peptide 3.4.25.1 GO:0004298 ... P25043 38628795
    572990 8rhj:V (3.05) BS02 peptide 3.4.25.1 GO:0004298 ... P25043 38628795
    572991 8rhj:V (3.05) BS03 MG 3.4.25.1 GO:0004298 ... P25043 38628795
    572992 8rhj:Y (3.05) BS01 peptide 3.4.25.1 GO:0004298 ... P30656 38628795
    572993 8rhj:Y (3.05) BS02 MG 3.4.25.1 GO:0004298 ... P30656 38628795
    572994 8rhj:Z (3.05) BS01 peptide ? GO:0000502 ... P23724 38628795
    572995 8rhj:Z (3.05) BS02 MG ? GO:0000502 ... P23724 38628795
    572996 8rhj:b (3.05) BS01 peptide 3.4.25.1 GO:0000502 ... P38624 38628795
    572997 8rhk:G (2.8) BS01 MG ? GO:0000502 ... P21243 38628795
    572998 8rhk:H (2.8) BS01 peptide 3.4.25.1 GO:0004298 ... P25043 38628795
    572999 8rhk:I (2.8) BS01 peptide ? GO:0000502 ... P25451 38628795
    573000 8rhk:I (2.8) BS02 MG ? GO:0000502 ... P25451 38628795

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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