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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    56001 2j91:C (1.8) BS02 AMP 4.3.2.2 GO:0001666 ... P30566 N/A
    56002 2j91:D (1.8) BS01 AMP 4.3.2.2 GO:0001666 ... P30566 N/A
    56003 2j91:D (1.8) BS02 AMP 4.3.2.2 GO:0001666 ... P30566 N/A
    56004 2j96:A (2.25) BS01 PVN ? GO:0009579 ... P00309 17209552
    56005 2j96:B (2.25) BS01 PVN ? GO:0009579 ... P00309 17209552
    56006 2j9a:A (1.73) BS01 peptide 3.4.11.1
    3.4.11.5
    3.4.13.23
    GO:0004177 ... P00727 17157838
    56007 2j9a:A (1.73) BS02 ZN 3.4.11.1
    3.4.11.5
    3.4.13.23
    GO:0004177 ... P00727 17157838
    56008 2j9a:A (1.73) BS03 ZN 3.4.11.1
    3.4.11.5
    3.4.13.23
    GO:0004177 ... P00727 17157838
    56009 2j9a:A (1.73) BS04 AHY 3.4.11.1
    3.4.11.5
    3.4.13.23
    GO:0004177 ... P00727 17157838 PDBbind: -logKd/Ki=5.89, IC50=1.3uM
    56010 2j9b:A (1.5) BS01 HEC ? GO:0005506 ... P00142 18295896
    56011 2j9b:B (1.5) BS01 HEC ? GO:0005506 ... P00142 18295896
    56012 2j9c:A (1.3) BS01 ATP ? GO:0005515 ... Q60381 17203075
    56013 2j9c:A (1.3) BS02 ATP ? GO:0005515 ... Q60381 17203075
    56014 2j9c:B (1.3) BS01 ATP ? GO:0005515 ... Q60381 17203075
    56015 2j9c:B (1.3) BS02 ATP ? GO:0005515 ... Q60381 17203075
    56016 2j9c:C (1.3) BS01 ATP ? GO:0005515 ... Q60381 17203075
    56017 2j9c:C (1.3) BS02 ATP ? GO:0005515 ... Q60381 17203075
    56018 2j9d:B (2.1) BS01 ADP ? GO:0005515 ... Q60381 17203075
    56019 2j9d:C (2.1) BS01 ADP ? GO:0005515 ... Q60381 17203075
    56020 2j9d:E (2.1) BS01 AMP ? GO:0005515 ... Q60381 17203075
    56021 2j9d:F (2.1) BS01 AMP ? GO:0005515 ... Q60381 17203075
    56022 2j9d:H (2.1) BS01 ADP ? GO:0005515 ... Q60381 17203075
    56023 2j9d:I (2.1) BS01 ADP ? GO:0005515 ... Q60381 17203075
    56024 2j9d:J (2.1) BS01 ADP ? GO:0005515 ... Q60381 17203075
    56025 2j9d:K (2.1) BS01 ADP ? GO:0005515 ... Q60381 17203075
    56026 2j9d:L (2.1) BS01 ADP ? GO:0005515 ... Q60381 17203075
    56027 2j9d:L (2.1) BS02 ADP ? GO:0005515 ... Q60381 17203075
    56028 2j9e:A (1.62) BS01 ATP ? GO:0005515 ... Q60381 17203075
    56029 2j9e:A (1.62) BS02 ATP ? GO:0005515 ... Q60381 17203075
    56030 2j9e:B (1.62) BS01 ATP ? GO:0005515 ... Q60381 17203075
    56031 2j9e:B (1.62) BS02 ATP ? GO:0005515 ... Q60381 17203075
    56032 2j9e:C (1.62) BS01 ATP ? GO:0005515 ... Q60381 17203075
    56033 2j9e:C (1.62) BS02 ATP ? GO:0005515 ... Q60381 17203075
    56034 2j9e:C (1.62) BS03 AKG ? GO:0005515 ... Q60381 17203075
    56035 2j9f:A (1.88) BS01 MN 1.2.4.4 GO:0003863 ... P12694 17329260
    56036 2j9f:A (1.88) BS02 THV 1.2.4.4 GO:0003863 ... P12694 17329260
    56037 2j9f:C (1.88) BS01 MN 1.2.4.4 GO:0003863 ... P12694 17329260
    56038 2j9f:C (1.88) BS02 THV 1.2.4.4 GO:0003863 ... P12694 17329260
    56039 2j9g:A (2.05) BS01 ANP 6.3.4.14 GO:0003824 ... P24182 18725455
    56040 2j9g:B (2.05) BS01 MG 6.3.4.14 GO:0003824 ... P24182 18725455
    56041 2j9g:B (2.05) BS02 ADP 6.3.4.14 GO:0003824 ... P24182 18725455
    56042 2j9h:A (2.4) BS01 GTX 2.5.1.18 GO:0000302 ... P09211 18177897 MOAD: Ki=410uM
    PDBbind: -logKd/Ki=3.39, Ki=410uM
    56043 2j9h:B (2.4) BS01 GTX 2.5.1.18 GO:0000302 ... P09211 18177897 MOAD: Ki=410uM
    PDBbind: -logKd/Ki=3.39, Ki=410uM
    56044 2j9m:A (2.5) BS01 PY8 2.7.11.22 GO:0000082 ... P24941 17131463 BindingDB: IC50=140nM
    56045 2j9n:A (1.5) BS01 peptide 3.4.21.4 GO:0004175 ... P00760 19461845
    56046 2j9n:A (1.5) BS02 peptide 3.4.21.4 GO:0004175 ... P00760 19461845
    56047 2j9n:A (1.5) BS03 CA 3.4.21.4 GO:0004175 ... P00760 19461845
    56048 2j9p:A (2.8) BS01 REZ 3.4.16.4 GO:0000270 ... P39844 17582436
    56049 2j9p:A (2.8) BS02 DAL 3.4.16.4 GO:0000270 ... P39844 17582436
    56050 2j9p:B (2.8) BS01 REZ 3.4.16.4 GO:0000270 ... P39844 17582436
    56051 2j9p:B (2.8) BS02 DAL 3.4.16.4 GO:0000270 ... P39844 17582436
    56052 2j9r:A (2.7) BS01 ZN 2.7.1.21 GO:0004797 ... Q81JX0 17288553
    56053 2j9r:A (2.7) BS02 THM 2.7.1.21 GO:0004797 ... Q81JX0 17288553
    56054 2j9x:A (1.9) BS01 G3P 4.2.1.20 GO:0000162 ... P00929 17559232
    56055 2j9x:B (1.9) BS01 P1T 4.2.1.20 GO:0000162 ... P0A2K1 17559232
    56056 2j9y:B (1.8) BS01 FOO 4.2.1.20 GO:0000162 ... P0A2K1 18004874
    56057 2j9y:B (1.8) BS02 NA 4.2.1.20 GO:0000162 ... P0A2K1 18004874
    56058 2j9z:B (1.8) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 18004874
    56059 2j9z:B (1.8) BS02 NA 4.2.1.20 GO:0000162 ... P0A2K1 18004874
    56060 2ja1:A (2.8) BS01 ZN 2.7.1.21 GO:0004797 ... Q0H0H6 17288553
    56061 2ja1:A (2.8) BS02 TTP 2.7.1.21 GO:0004797 ... Q0H0H6 17288553
    56062 2ja5:A (3.8) BS01 rna 2.7.7.6 GO:0000428 ... P04050 17290000
    56063 2ja5:A (3.8) BS02 dna 2.7.7.6 GO:0000428 ... P04050 17290000
    56064 2ja5:A (3.8) BS03 MG 2.7.7.6 GO:0000428 ... P04050 17290000
    56065 2ja5:A (3.8) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 17290000
    56066 2ja5:B (3.8) BS01 rna 2.7.7.6 GO:0000428 ... P08518 17290000
    56067 2ja5:B (3.8) BS02 dna 2.7.7.6 GO:0000428 ... P08518 17290000
    56068 2ja5:B (3.8) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 17290000
    56069 2ja5:C (3.8) BS01 ZN ? GO:0000428 ... P16370 17290000
    56070 2ja5:I (3.8) BS01 ZN ? GO:0000428 ... P27999 17290000
    56071 2ja5:J (3.8) BS01 ZN ? GO:0000428 ... P22139 17290000
    56072 2ja5:L (3.8) BS01 ZN ? GO:0000428 ... P40422 17290000
    56073 2ja6:A (4.0) BS01 dna 2.7.7.6 GO:0000428 ... P04050 17290000
    56074 2ja6:A (4.0) BS02 rna 2.7.7.6 GO:0000428 ... P04050 17290000
    56075 2ja6:A (4.0) BS03 dna 2.7.7.6 GO:0000428 ... P04050 17290000
    56076 2ja6:A (4.0) BS04 MG 2.7.7.6 GO:0000428 ... P04050 17290000
    56077 2ja6:A (4.0) BS05 ZN 2.7.7.6 GO:0000428 ... P04050 17290000
    56078 2ja6:B (4.0) BS01 rna 2.7.7.6 GO:0000428 ... P08518 17290000
    56079 2ja6:B (4.0) BS02 dna 2.7.7.6 GO:0000428 ... P08518 17290000
    56080 2ja6:B (4.0) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 17290000
    56081 2ja6:C (4.0) BS01 ZN 2.7.7.6 GO:0000428 ... P16370 17290000
    56082 2ja6:I (4.0) BS01 ZN 2.7.7.6 GO:0000428 ... P27999 17290000
    56083 2ja6:J (4.0) BS01 ZN 2.7.7.6 GO:0000428 ... P22139 17290000
    56084 2ja6:L (4.0) BS01 ZN 2.7.7.6 GO:0000428 ... P40422 17290000
    56085 2ja7:A (3.8) BS01 dna 2.7.7.6 GO:0000428 ... P04050 17290000
    56086 2ja7:A (3.8) BS02 rna 2.7.7.6 GO:0000428 ... P04050 17290000
    56087 2ja7:A (3.8) BS03 MG 2.7.7.6 GO:0000428 ... P04050 17290000
    56088 2ja7:A (3.8) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 17290000
    56089 2ja7:B (3.8) BS01 dna 2.7.7.6 GO:0000428 ... P08518 17290000
    56090 2ja7:B (3.8) BS02 rna 2.7.7.6 GO:0000428 ... P08518 17290000
    56091 2ja7:B (3.8) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 17290000
    56092 2ja7:C (3.8) BS01 ZN 2.7.7.6 GO:0000428 ... P16370 17290000
    56093 2ja7:I (3.8) BS01 ZN 2.7.7.6 GO:0000428 ... P27999 17290000
    56094 2ja7:I (3.8) BS02 ZN 2.7.7.6 GO:0000428 ... P27999 17290000
    56095 2ja7:J (3.8) BS01 ZN 2.7.7.6 GO:0000428 ... P22139 17290000
    56096 2ja7:L (3.8) BS01 ZN 2.7.7.6 GO:0000428 ... P40422 17290000
    56097 2ja7:M (3.8) BS01 dna 2.7.7.6 GO:0000428 ... P04050 17290000
    56098 2ja7:M (3.8) BS02 rna 2.7.7.6 GO:0000428 ... P04050 17290000
    56099 2ja7:M (3.8) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 17290000
    56100 2ja7:M (3.8) BS04 MG 2.7.7.6 GO:0000428 ... P04050 17290000
    56101 2ja7:N (3.8) BS01 dna 2.7.7.6 GO:0000428 ... P08518 17290000
    56102 2ja7:N (3.8) BS02 rna 2.7.7.6 GO:0000428 ... P08518 17290000
    56103 2ja7:N (3.8) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 17290000
    56104 2ja7:O (3.8) BS01 ZN 2.7.7.6 GO:0000428 ... P16370 17290000
    56105 2ja7:U (3.8) BS01 ZN 2.7.7.6 GO:0000428 ... P27999 17290000
    56106 2ja7:V (3.8) BS01 ZN 2.7.7.6 GO:0000428 ... P22139 17290000
    56107 2ja7:X (3.8) BS01 ZN 2.7.7.6 GO:0000428 ... P40422 17290000
    56108 2ja8:A (3.8) BS01 dna 2.7.7.6 GO:0000428 ... P04050 17290000
    56109 2ja8:A (3.8) BS02 rna 2.7.7.6 GO:0000428 ... P04050 17290000
    56110 2ja8:A (3.8) BS03 dna 2.7.7.6 GO:0000428 ... P04050 17290000
    56111 2ja8:A (3.8) BS04 MG 2.7.7.6 GO:0000428 ... P04050 17290000
    56112 2ja8:A (3.8) BS05 ZN 2.7.7.6 GO:0000428 ... P04050 17290000
    56113 2ja8:B (3.8) BS01 rna 2.7.7.6 GO:0000428 ... P08518 17290000
    56114 2ja8:B (3.8) BS02 dna 2.7.7.6 GO:0000428 ... P08518 17290000
    56115 2ja8:B (3.8) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 17290000
    56116 2ja8:C (3.8) BS01 ZN 2.7.7.6 GO:0000428 ... P16370 17290000
    56117 2ja8:I (3.8) BS01 ZN 2.7.7.6 GO:0000428 ... P27999 17290000
    56118 2ja8:J (3.8) BS01 ZN 2.7.7.6 GO:0000428 ... P22139 17290000
    56119 2ja8:L (3.8) BS01 ZN 2.7.7.6 GO:0000428 ... P40422 17290000
    56120 2jac:A (2.02) BS01 GSH 1.11.1.9
    2.5.1.18
    GO:0004364 ... P25373 17327665
    56121 2jae:A (1.25) BS01 FAD 1.4.3.2 GO:0000166 ... Q8VPD4 17234209
    56122 2jae:B (1.25) BS01 FAD 1.4.3.2 GO:0000166 ... Q8VPD4 17234209
    56123 2jaf:A (1.7) BS01 CL ? GO:0005216 ... B0R2U4 17117890
    56124 2jaf:A (1.7) BS02 CL ? GO:0005216 ... B0R2U4 17117890
    56125 2jaf:A (1.7) BS03 RET ? GO:0005216 ... B0R2U4 17117890
    56126 2jag:A (1.93) BS01 CL ? GO:0005216 ... B0R2U4 17117890
    56127 2jag:A (1.93) BS02 CL ? GO:0005216 ... B0R2U4 17117890
    56128 2jag:A (1.93) BS03 RET ? GO:0005216 ... B0R2U4 17117890
    56129 2jai:A (2.3) BS01 CIR 3.5.3.18 GO:0000052 ... O94760 17273169 BindingDB: Ki=3.700e+6nM
    56130 2jaj:A (2.0) BS01 D20 3.5.3.18 GO:0000052 ... O94760 17273169 MOAD: ic50<25uM
    PDBbind: -logKd/Ki=4.60, IC50=25uM
    BindingDB: Ki=13000nM, IC50=29000nM
    56131 2jaj:B (2.0) BS01 D20 3.5.3.18 GO:0000052 ... O94760 17273169 MOAD: ic50<25uM
    BindingDB: Ki=13000nM, IC50=29000nM
    56132 2jao:A (2.0) BS01 DGP 3.1.3.- GO:0000166 ... Q9JM14 17985935
    56133 2jao:A (2.0) BS02 MG 3.1.3.- GO:0000166 ... Q9JM14 17985935
    56134 2jaq:A (2.3) BS01 DCP 2.7.1.113 GO:0004138 ... Q93IG4 17229440
    56135 2jaq:B (2.3) BS01 DCP 2.7.1.113 GO:0004138 ... Q93IG4 17229440
    56136 2jar:A (1.94) BS01 UMP 3.1.3.- GO:0000166 ... Q9JM14 17985935
    56137 2jar:A (1.94) BS02 MG 3.1.3.- GO:0000166 ... Q9JM14 17985935
    56138 2jas:A (2.7) BS01 DTP 2.7.1.113 GO:0004138 ... Q93IG4 17229440
    56139 2jas:B (2.7) BS01 DTP 2.7.1.113 GO:0004138 ... Q93IG4 17229440
    56140 2jas:C (2.7) BS01 DTP 2.7.1.113 GO:0004138 ... Q93IG4 17229440
    56141 2jas:D (2.7) BS01 DTP 2.7.1.113 GO:0004138 ... Q93IG4 17229440
    56142 2jas:E (2.7) BS01 DTP 2.7.1.113 GO:0004138 ... Q93IG4 17229440
    56143 2jas:F (2.7) BS01 DTP 2.7.1.113 GO:0004138 ... Q93IG4 17229440
    56144 2jat:A (2.6) BS01 POP 2.7.1.113 GO:0004138 ... Q93IG4 17229440
    56145 2jat:A (2.6) BS02 DCM 2.7.1.113 GO:0004138 ... Q93IG4 17229440
    56146 2jat:B (2.6) BS01 POP 2.7.1.113 GO:0004138 ... Q93IG4 17229440
    56147 2jat:B (2.6) BS02 DCM 2.7.1.113 GO:0004138 ... Q93IG4 17229440
    56148 2jax:A (3.22) BS01 ATP ? GO:0001666 ... P9WFD7 N/A
    56149 2jax:A (3.22) BS02 ATP ? GO:0001666 ... P9WFD7 N/A
    56150 2jb1:A (1.55) BS01 ALA 1.4.3.2 GO:0000166 ... Q8VPD4 17234209
    56151 2jb1:A (1.55) BS02 FAD 1.4.3.2 GO:0000166 ... Q8VPD4 17234209
    56152 2jb1:B (1.55) BS01 ALA 1.4.3.2 GO:0000166 ... Q8VPD4 17234209
    56153 2jb1:B (1.55) BS02 FAD 1.4.3.2 GO:0000166 ... Q8VPD4 17234209
    56154 2jb2:A (1.45) BS01 PHE 1.4.3.2 GO:0000166 ... Q8VPD4 17234209
    56155 2jb2:A (1.45) BS02 FAD 1.4.3.2 GO:0000166 ... Q8VPD4 17234209
    56156 2jb2:B (1.45) BS01 PHE 1.4.3.2 GO:0000166 ... Q8VPD4 17234209
    56157 2jb2:B (1.45) BS02 FAD 1.4.3.2 GO:0000166 ... Q8VPD4 17234209
    56158 2jb3:A (1.85) BS01 FAD 1.4.3.2 GO:0000166 ... Q8VPD4 17234209
    56159 2jb3:A (1.85) BS02 BE2 1.4.3.2 GO:0000166 ... Q8VPD4 17234209
    56160 2jb3:B (1.85) BS01 FAD 1.4.3.2 GO:0000166 ... Q8VPD4 17234209
    56161 2jb3:B (1.85) BS02 BE2 1.4.3.2 GO:0000166 ... Q8VPD4 17234209
    56162 2jb4:A (1.3) BS01 A14 1.21.3.1 GO:0005506 ... P05326 17907118
    56163 2jb4:A (1.3) BS02 FE 1.21.3.1 GO:0005506 ... P05326 17907118
    56164 2jb5:L (2.8) BS01 T5C ? GO:0002250 ... P0DOY2 18241888 PDBbind: -logKd/Ki=9.22, Kd=600pM
    56165 2jb6:A (2.85) BS01 T5C ? GO:0002250 ... P0DOY2 18241888 PDBbind: -logKd/Ki=10.96, Kd=11pM
    56166 2jb6:L (2.85) BS01 T5C ? GO:0002250 ... P0DOY2 18241888
    56167 2jb6:L (2.85) BS02 T5C ? GO:0002250 ... P0DOY2 18241888
    56168 2jbh:A (1.7) BS01 PO4 2.4.2.8 GO:0000166 ... Q9NRG1 21054786
    56169 2jbh:A (1.7) BS02 CA 2.4.2.8 GO:0000166 ... Q9NRG1 21054786
    56170 2jbh:A (1.7) BS03 5GP 2.4.2.8 GO:0000166 ... Q9NRG1 21054786
    56171 2jbh:B (1.7) BS01 PO4 2.4.2.8 GO:0000166 ... Q9NRG1 21054786
    56172 2jbh:B (1.7) BS02 CA 2.4.2.8 GO:0000166 ... Q9NRG1 21054786
    56173 2jbh:B (1.7) BS03 5GP 2.4.2.8 GO:0000166 ... Q9NRG1 21054786
    56174 2jbj:A (2.19) BS01 ZN 3.4.17.21 GO:0004180 ... Q04609 17372356
    56175 2jbj:A (2.19) BS02 ZN 3.4.17.21 GO:0004180 ... Q04609 17372356
    56176 2jbj:A (2.19) BS03 CA 3.4.17.21 GO:0004180 ... Q04609 17372356
    56177 2jbj:A (2.19) BS04 G88 3.4.17.21 GO:0004180 ... Q04609 17372356 MOAD: Ki=0.2nM
    PDBbind: -logKd/Ki=9.70, Ki=0.2nM
    BindingDB: Ki=0.280000nM, IC50=300nM, Kd=0.5nM, EC50=0.620000nM
    56178 2jbk:A (2.99) BS01 ZN 3.4.17.21 GO:0004180 ... Q04609 17372356
    56179 2jbk:A (2.99) BS02 ZN 3.4.17.21 GO:0004180 ... Q04609 17372356
    56180 2jbk:A (2.99) BS03 CA 3.4.17.21 GO:0004180 ... Q04609 17372356
    56181 2jbk:A (2.99) BS04 QUS 3.4.17.21 GO:0004180 ... Q04609 17372356 PDBbind: -logKd/Ki=6.40, Ki=0.4uM
    56182 2jbl:C (2.4) BS01 HEC ? GO:0005506 ... P07173 17337272
    56183 2jbl:C (2.4) BS02 HEC ? GO:0005506 ... P07173 17337272
    56184 2jbl:C (2.4) BS03 HEC ? GO:0005506 ... P07173 17337272
    56185 2jbl:C (2.4) BS04 HEC ? GO:0005506 ... P07173 17337272
    56186 2jbl:L (2.4) BS01 BCB ? GO:0009772 ... P06009 17337272
    56187 2jbl:L (2.4) BS02 BCB ? GO:0009772 ... P06009 17337272
    56188 2jbl:L (2.4) BS03 BPB ? GO:0009772 ... P06009 17337272
    56189 2jbl:L (2.4) BS04 SMA ? GO:0009772 ... P06009 17337272 PDBbind: -logKd/Ki=5.89, IC50=1.3uM
    56190 2jbl:L (2.4) BS05 BCB ? GO:0009772 ... P06009 17337272
    56191 2jbl:L (2.4) BS06 BPB ? GO:0009772 ... P06009 17337272
    56192 2jbl:L (2.4) BS07 FE ? GO:0009772 ... P06009 17337272
    56193 2jbl:L (2.4) BS08 MQ7 ? GO:0009772 ... P06009 17337272
    56194 2jbl:M (2.4) BS01 BCB ? GO:0009772 ... P06010 17337272
    56195 2jbl:M (2.4) BS02 BPB ? GO:0009772 ... P06010 17337272
    56196 2jbl:M (2.4) BS03 BCB ? GO:0009772 ... P06010 17337272
    56197 2jbl:M (2.4) BS04 BCB ? GO:0009772 ... P06010 17337272
    56198 2jbl:M (2.4) BS05 BPB ? GO:0009772 ... P06010 17337272
    56199 2jbl:M (2.4) BS06 FE ? GO:0009772 ... P06010 17337272
    56200 2jbl:M (2.4) BS07 MQ7 ? GO:0009772 ... P06010 17337272

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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