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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    31401 1sff:B (1.9) BS02 SO4 2.6.1.19
    2.6.1.48    		 GO:0003867 ... P22256 15323550
    31402 1sff:B (1.9) BS03 IK2 2.6.1.19
    2.6.1.48    		 GO:0003867 ... P22256 15323550
    31403 1sff:C (1.9) BS01 SO4 2.6.1.19
    2.6.1.48    		 GO:0003867 ... P22256 15323550
    31404 1sff:C (1.9) BS02 IK2 2.6.1.19
    2.6.1.48    		 GO:0003867 ... P22256 15323550
    31405 1sff:C (1.9) BS03 IK2 2.6.1.19
    2.6.1.48    		 GO:0003867 ... P22256 15323550
    31406 1sff:D (1.9) BS01 IK2 2.6.1.19
    2.6.1.48    		 GO:0003867 ... P22256 15323550
    31407 1sff:D (1.9) BS02 SO4 2.6.1.19
    2.6.1.48    		 GO:0003867 ... P22256 15323550
    31408 1sff:D (1.9) BS03 SO4 2.6.1.19
    2.6.1.48    		 GO:0003867 ... P22256 15323550
    31409 1sff:D (1.9) BS04 IK2 2.6.1.19
    2.6.1.48    		 GO:0003867 ... P22256 15323550
    31410 1sfh:A (1.05) BS01 CU1 ? GO:0005507 ... P22364 15260480
    31411 1sfh:B (1.05) BS01 CU1 ? GO:0005507 ... P22364 15260480
    31412 1sfi:A (1.65) BS01 peptide 3.4.21.4 GO:0004175 ... P00760 10390350
    31413 1sfi:A (1.65) BS02 CA 3.4.21.4 GO:0004175 ... P00760 10390350
    31414 1sfo:A (3.61) BS01 rna 2.7.7.6 GO:0000428 ... P04050 14963331
    31415 1sfo:A (3.61) BS02 dna 2.7.7.6 GO:0000428 ... P04050 14963331
    31416 1sfo:A (3.61) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 14963331
    31417 1sfo:A (3.61) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 14963331
    31418 1sfo:A (3.61) BS05 MG 2.7.7.6 GO:0000428 ... P04050 14963331
    31419 1sfo:B (3.61) BS01 rna 2.7.7.6 GO:0000428 ... P08518 14963331
    31420 1sfo:B (3.61) BS02 dna 2.7.7.6 GO:0000428 ... P08518 14963331
    31421 1sfo:B (3.61) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 14963331
    31422 1sfo:C (3.61) BS01 ZN 2.7.7.6 GO:0000428 ... P16370 14963331
    31423 1sfo:I (3.61) BS01 ZN 2.7.7.6 GO:0000428 ... P27999 14963331
    31424 1sfo:I (3.61) BS02 ZN 2.7.7.6 GO:0000428 ... P27999 14963331
    31425 1sfo:J (3.61) BS01 ZN 2.7.7.6 GO:0000428 ... P22139 14963331
    31426 1sfo:L (3.61) BS01 ZN 2.7.7.6 GO:0000428 ... P40422 14963331
    31427 1sft:A (1.9) BS01 PLP 5.1.1.1 GO:0003824 ... P10724 9063881
    31428 1sft:B (1.9) BS01 PLP 5.1.1.1 GO:0003824 ... P10724 9063881
    31429 1sfv:A (-1.00) BS01 CA 3.1.1.4 GO:0002446 ... P00592 7703697
    31430 1sfw:A (-1.00) BS01 CA 3.1.1.4 GO:0002446 ... P00592 7703697
    31431 1sg0:A (1.5) BS01 ZN 1.10.5.1 GO:0001512 ... P16083 15350128
    31432 1sg0:A (1.5) BS02 FAD 1.10.5.1 GO:0001512 ... P16083 15350128
    31433 1sg0:A (1.5) BS03 STL 1.10.5.1 GO:0001512 ... P16083 15350128 MOAD: Kd=35nM
    BindingDB: IC50=960nM, Ki=88nM, Kd=54nM
    31434 1sg0:A (1.5) BS04 STL 1.10.5.1 GO:0001512 ... P16083 15350128 MOAD: Kd=35nM
    BindingDB: IC50=960nM, Ki=88nM, Kd=54nM
    31435 1sg0:B (1.5) BS01 STL 1.10.5.1 GO:0001512 ... P16083 15350128 MOAD: Kd=35nM
    BindingDB: IC50=960nM, Ki=88nM, Kd=54nM
    31436 1sg0:B (1.5) BS02 ZN 1.10.5.1 GO:0001512 ... P16083 15350128
    31437 1sg0:B (1.5) BS03 FAD 1.10.5.1 GO:0001512 ... P16083 15350128
    31438 1sg0:B (1.5) BS04 STL 1.10.5.1 GO:0001512 ... P16083 15350128 MOAD: Kd=35nM
    BindingDB: IC50=960nM, Ki=88nM, Kd=54nM
    31439 1sg6:A (1.7) BS01 ZN 1.1.1.25
    2.5.1.19
    2.7.1.71
    4.2.1.10
    4.2.3.4    		 GO:0003856 ... P07547 15103156
    31440 1sg6:A (1.7) BS02 NAD 1.1.1.25
    2.5.1.19
    2.7.1.71
    4.2.1.10
    4.2.3.4    		 GO:0003856 ... P07547 15103156
    31441 1sg6:B (1.7) BS01 ZN 1.1.1.25
    2.5.1.19
    2.7.1.71
    4.2.1.10
    4.2.3.4    		 GO:0003856 ... P07547 15103156
    31442 1sg6:B (1.7) BS02 NAD 1.1.1.25
    2.5.1.19
    2.7.1.71
    4.2.1.10
    4.2.3.4    		 GO:0003856 ... P07547 15103156
    31443 1sgl:A (2.2) BS01 SO4 3.1.-.- GO:0003723 ... E0CX00 15274921
    31444 1sgl:A (2.2) BS02 SO4 3.1.-.- GO:0003723 ... E0CX00 15274921
    31445 1sgl:A (2.2) BS03 SO4 3.1.-.- GO:0003723 ... E0CX00 15274921
    31446 1shk:A (1.9) BS01 MG 2.7.1.71 GO:0000287 ... P10880 15299895
    31447 1shk:A (1.9) BS02 MG 2.7.1.71 GO:0000287 ... P10880 15299895
    31448 1shk:B (1.9) BS01 MG 2.7.1.71 GO:0000287 ... P10880 15299895
    31449 1shn:A (2.15) BS01 ZN 3.1.3.1 GO:0004035 ... Q9BHT8 15333925
    31450 1shn:A (2.15) BS02 ZN 3.1.3.1 GO:0004035 ... Q9BHT8 15333925
    31451 1shn:A (2.15) BS03 ZN 3.1.3.1 GO:0004035 ... Q9BHT8 15333925
    31452 1shn:A (2.15) BS04 PO4 3.1.3.1 GO:0004035 ... Q9BHT8 15333925
    31453 1shn:B (2.15) BS01 ZN 3.1.3.1 GO:0004035 ... Q9BHT8 15333925
    31454 1shn:B (2.15) BS02 ZN 3.1.3.1 GO:0004035 ... Q9BHT8 15333925
    31455 1shn:B (2.15) BS03 ZN 3.1.3.1 GO:0004035 ... Q9BHT8 15333925
    31456 1shn:B (2.15) BS04 PO4 3.1.3.1 GO:0004035 ... Q9BHT8 15333925
    31457 1shq:A (2.0) BS01 ZN 3.1.3.1 GO:0004035 ... Q9BHT8 15333925
    31458 1shq:A (2.0) BS02 ZN 3.1.3.1 GO:0004035 ... Q9BHT8 15333925
    31459 1shq:A (2.0) BS03 MG 3.1.3.1 GO:0004035 ... Q9BHT8 15333925
    31460 1shq:B (2.0) BS01 ZN 3.1.3.1 GO:0004035 ... Q9BHT8 15333925
    31461 1shq:B (2.0) BS02 ZN 3.1.3.1 GO:0004035 ... Q9BHT8 15333925
    31462 1shq:B (2.0) BS03 MG 3.1.3.1 GO:0004035 ... Q9BHT8 15333925
    31463 1shr:A (1.88) BS01 CYN ? GO:0004601 ... P69905 15449937
    31464 1shr:A (1.88) BS02 FE ? GO:0004601 ... P69905 15449937
    31465 1shr:A (1.88) BS03 HEM ? GO:0004601 ... P69905 15449937
    31466 1shr:B (1.88) BS01 CYN ? GO:0004601 ... P02042 15449937
    31467 1shr:B (1.88) BS02 FE ? GO:0004601 ... P02042 15449937
    31468 1shr:B (1.88) BS03 CYN ? GO:0004601 ... P02042 15449937
    31469 1shr:B (1.88) BS04 CYN ? GO:0004601 ... P02042 15449937
    31470 1shr:B (1.88) BS05 HEM ? GO:0004601 ... P02042 15449937
    31471 1shr:C (1.88) BS01 CYN ? GO:0004601 ... P69905 15449937
    31472 1shr:C (1.88) BS02 HEM ? GO:0004601 ... P69905 15449937
    31473 1shr:D (1.88) BS01 CYN ? GO:0004601 ... P02042 15449937
    31474 1shr:D (1.88) BS02 CYN ? GO:0004601 ... P02042 15449937
    31475 1shr:D (1.88) BS03 CYN ? GO:0004601 ... P02042 15449937
    31476 1shr:D (1.88) BS04 HEM ? GO:0004601 ... P02042 15449937
    31477 1shw:A (2.2) BS01 ZN ? GO:0016020 ... O08543 15107857
    31478 1si0:A (1.35) BS01 FE ? GO:0030288 ... Q9Z4N6 15175304
    31479 1si0:A (1.35) BS02 CO3 ? GO:0030288 ... Q9Z4N6 15175304
    31480 1si1:A (1.45) BS01 FE ? GO:0030288 ... Q9Z4N6 15175304
    31481 1si4:A (2.2) BS01 CYN ? GO:0004601 ... P69905 15449937
    31482 1si4:A (2.2) BS02 HEM ? GO:0004601 ... P69905 15449937
    31483 1si4:B (2.2) BS01 CYN ? GO:0004601 ... P02042 15449937
    31484 1si4:B (2.2) BS02 HEM ? GO:0004601 ... P02042 15449937
    31485 1si4:C (2.2) BS01 CYN ? GO:0004601 ... P69905 15449937
    31486 1si4:C (2.2) BS02 HEM ? GO:0004601 ... P69905 15449937
    31487 1si4:D (2.2) BS01 HEM ? GO:0004601 ... P02042 15449937
    31488 1si6:X (1.45) BS01 HEM ? GO:0004439 ... O76745 N/A
    31489 1si8:A (2.3) BS01 SO4 1.11.1.6 GO:0004096 ... Q834P5 15272159
    31490 1si8:A (2.3) BS02 HEM 1.11.1.6 GO:0004096 ... Q834P5 15272159
    31491 1si8:B (2.3) BS01 SO4 1.11.1.6 GO:0004096 ... Q834P5 15272159
    31492 1si8:B (2.3) BS02 HEM 1.11.1.6 GO:0004096 ... Q834P5 15272159
    31493 1si8:C (2.3) BS01 SO4 1.11.1.6 GO:0004096 ... Q834P5 15272159
    31494 1si8:C (2.3) BS02 HEM 1.11.1.6 GO:0004096 ... Q834P5 15272159
    31495 1si8:D (2.3) BS01 SO4 1.11.1.6 GO:0004096 ... Q834P5 15272159
    31496 1si8:D (2.3) BS02 HEM 1.11.1.6 GO:0004096 ... Q834P5 15272159
    31497 1sid:A (3.65) BS01 GAL ? GO:0005198 ... P49302 8805524
    31498 1sid:A (3.65) BS02 SIA ? GO:0005198 ... P49302 8805524
    31499 1sid:B (3.65) BS01 GAL ? GO:0005198 ... P49302 8805524
    31500 1sid:B (3.65) BS02 SIA ? GO:0005198 ... P49302 8805524
    31501 1sid:C (3.65) BS01 GAL ? GO:0005198 ... P49302 8805524
    31502 1sid:C (3.65) BS02 SIA ? GO:0005198 ... P49302 8805524
    31503 1sid:D (3.65) BS01 GAL ? GO:0005198 ... P49302 8805524
    31504 1sid:D (3.65) BS02 SIA ? GO:0005198 ... P49302 8805524
    31505 1sid:E (3.65) BS01 GAL ? GO:0005198 ... P49302 8805524
    31506 1sid:E (3.65) BS02 SIA ? GO:0005198 ... P49302 8805524
    31507 1sid:F (3.65) BS01 GAL ? GO:0005198 ... P49302 8805524
    31508 1sid:F (3.65) BS02 SIA ? GO:0005198 ... P49302 8805524
    31509 1sie:A (3.65) BS01 GAL ? GO:0005198 ... P49302 8805524
    31510 1sie:A (3.65) BS02 SIA ? GO:0005198 ... P49302 8805524
    31511 1sie:B (3.65) BS01 GAL ? GO:0005198 ... P49302 8805524
    31512 1sie:B (3.65) BS02 SIA ? GO:0005198 ... P49302 8805524
    31513 1sie:C (3.65) BS01 SIA ? GO:0005198 ... P49302 8805524
    31514 1sie:D (3.65) BS01 SIA ? GO:0005198 ... P49302 8805524
    31515 1sie:E (3.65) BS01 GAL ? GO:0005198 ... P49302 8805524
    31516 1sie:E (3.65) BS02 SIA ? GO:0005198 ... P49302 8805524
    31517 1sie:F (3.65) BS01 GAL ? GO:0005198 ... P49302 8805524
    31518 1sie:F (3.65) BS02 SIA ? GO:0005198 ... P49302 8805524
    31519 1sir:A (2.6) BS01 FAD 1.3.8.6 GO:0000062 ... Q92947 15274622
    31520 1sir:A (2.6) BS02 NBC 1.3.8.6 GO:0000062 ... Q92947 15274622
    31521 1siw:A (2.2) BS01 GDP 1.7.5.1 GO:0005515 ... P09152 15122898
    31522 1siw:A (2.2) BS02 SF4 1.7.5.1 GO:0005515 ... P09152 15122898
    31523 1siw:B (2.2) BS01 SF4 1.7.5.1 GO:0005515 ... P11349 15122898
    31524 1siw:B (2.2) BS02 SF4 1.7.5.1 GO:0005515 ... P11349 15122898
    31525 1siw:B (2.2) BS03 SF4 1.7.5.1 GO:0005515 ... P11349 15122898
    31526 1siw:B (2.2) BS04 F3S 1.7.5.1 GO:0005515 ... P11349 15122898
    31527 1siw:B (2.2) BS05 HEM 1.7.5.1 GO:0005515 ... P11349 15122898
    31528 1siw:C (2.2) BS01 HEM 1.7.5.1 GO:0005886 ... P11350 15122898
    31529 1siw:C (2.2) BS02 HEM 1.7.5.1 GO:0005886 ... P11350 15122898
    31530 1sj2:A (2.41) BS01 HEM 1.11.1.21 GO:0004096 ... P9WIE5 15231843
    31531 1sj2:B (2.41) BS01 HEM 1.11.1.21 GO:0004096 ... P9WIE5 15231843
    31532 1sj9:B (2.5) BS01 PO4 2.4.2.3 GO:0003824 ... P0A1F6 16511035
    31533 1sje:A (2.45) BS01 peptide ? GO:0006955 ... P01903 15331779
    31534 1sje:B (2.45) BS01 peptide ? GO:0006955 ... P01911 15331779
    31535 1sjh:A (2.25) BS01 peptide ? GO:0006955 ... P01903 15331779
    31536 1sjh:B (2.25) BS01 peptide ? GO:0006955 ... P01911 15331779
    31537 1sjm:A (1.4) BS01 CU 1.7.2.1 GO:0005507 ... P38501 15131305
    31538 1sjm:A (1.4) BS02 CU 1.7.2.1 GO:0005507 ... P38501 15131305
    31539 1sjm:A (1.4) BS03 NO2 1.7.2.1 GO:0005507 ... P38501 15131305
    31540 1sjm:A (1.4) BS04 NO2 1.7.2.1 GO:0005507 ... P38501 15131305
    31541 1sjm:B (1.4) BS01 NO2 1.7.2.1 GO:0005507 ... P38501 15131305
    31542 1sjm:B (1.4) BS02 CU 1.7.2.1 GO:0005507 ... P38501 15131305
    31543 1sjm:B (1.4) BS03 CU 1.7.2.1 GO:0005507 ... P38501 15131305
    31544 1sjm:B (1.4) BS04 NO2 1.7.2.1 GO:0005507 ... P38501 15131305
    31545 1sjm:C (1.4) BS01 NO2 1.7.2.1 GO:0005507 ... P38501 15131305
    31546 1sjm:C (1.4) BS02 CU 1.7.2.1 GO:0005507 ... P38501 15131305
    31547 1sjm:C (1.4) BS03 CU 1.7.2.1 GO:0005507 ... P38501 15131305
    31548 1sjm:C (1.4) BS04 NO2 1.7.2.1 GO:0005507 ... P38501 15131305
    31549 1sk6:A (3.2) BS01 YB 4.6.1.1 GO:0005576 ... P40136 15131111
    31550 1sk6:A (3.2) BS02 YB 4.6.1.1 GO:0005576 ... P40136 15131111
    31551 1sk6:A (3.2) BS03 YB 4.6.1.1 GO:0005576 ... P40136 15131111
    31552 1sk6:A (3.2) BS04 CMP 4.6.1.1 GO:0005576 ... P40136 15131111
    31553 1sk6:A (3.2) BS05 POP 4.6.1.1 GO:0005576 ... P40136 15131111
    31554 1sk6:B (3.2) BS01 YB 4.6.1.1 GO:0005576 ... P40136 15131111
    31555 1sk6:B (3.2) BS02 YB 4.6.1.1 GO:0005576 ... P40136 15131111
    31556 1sk6:B (3.2) BS03 CMP 4.6.1.1 GO:0005576 ... P40136 15131111
    31557 1sk6:B (3.2) BS04 POP 4.6.1.1 GO:0005576 ... P40136 15131111
    31558 1sk6:C (3.2) BS01 YB 4.6.1.1 GO:0005576 ... P40136 15131111
    31559 1sk6:C (3.2) BS02 YB 4.6.1.1 GO:0005576 ... P40136 15131111
    31560 1sk6:C (3.2) BS03 YB 4.6.1.1 GO:0005576 ... P40136 15131111
    31561 1sk6:C (3.2) BS04 CMP 4.6.1.1 GO:0005576 ... P40136 15131111
    31562 1sk6:C (3.2) BS05 POP 4.6.1.1 GO:0005576 ... P40136 15131111
    31563 1sk6:D (3.2) BS01 CA ? GO:0000086 ... P0DP23 15131111
    31564 1sk6:D (3.2) BS02 CA ? GO:0000086 ... P0DP23 15131111
    31565 1sk6:E (3.2) BS01 CA ? GO:0000086 ... P0DP23 15131111
    31566 1sk6:E (3.2) BS02 CA ? GO:0000086 ... P0DP23 15131111
    31567 1sk6:F (3.2) BS01 CA ? GO:0000086 ... P0DP23 15131111
    31568 1sk6:F (3.2) BS02 CA ? GO:0000086 ... P0DP23 15131111
    31569 1sk8:A (1.65) BS01 PO4 3.1.3.-
    3.1.3.8    		 GO:0003993 ... O00092 15341723
    31570 1sk8:A (1.65) BS02 PO4 3.1.3.-
    3.1.3.8    		 GO:0003993 ... O00092 15341723
    31571 1sk9:A (1.64) BS01 PO4 3.1.3.-
    3.1.3.8    		 GO:0003993 ... O00092 15341723
    31572 1skg:A (1.21) BS01 peptide 3.1.1.4 GO:0004623 ... P59071 N/A
    31573 1skq:A (1.8) BS01 GDP ? GO:0003746 ... P35021 15157096
    31574 1skq:B (1.8) BS01 GDP ? GO:0003746 ... P35021 15157096
    31575 1sku:D (2.6) BS01 ZN 2.1.3.2 GO:0005515 ... P0A7F3 15014067
    31576 1sl3:A (1.81) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 15163182
    31577 1sl3:A (1.81) BS02 170 3.4.21.5 GO:0004252 ... P00734 15163182 MOAD: Ki=1.4pM
    PDBbind: -logKd/Ki=11.85, Ki=1.4pM
    BindingDB: Ki=0.001400nM
    31578 1sla:A (2.45) BS01 GAL ? GO:0005576 ... P11116 7773775
    31579 1slb:A (2.3) BS01 GAL ? GO:0005576 ... P11116 7773775
    31580 1slb:C (2.3) BS01 GAL ? GO:0005576 ... P11116 7773775
    31581 1slc:A (2.15) BS01 GAL ? GO:0005576 ... P11116 7773775
    31582 1slc:B (2.15) BS01 GAL ? GO:0005576 ... P11116 7773775
    31583 1sli:A (2.0) BS01 DAN 4.2.2.15 GO:0004308 ... Q27701 9562562
    31584 1slm:A (1.9) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 8535233
    31585 1slm:A (1.9) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 8535233
    31586 1slm:A (1.9) BS03 CA 3.4.24.17 GO:0004222 ... P08254 8535233
    31587 1slm:A (1.9) BS04 CA 3.4.24.17 GO:0004222 ... P08254 8535233
    31588 1sln:A (2.27) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 8535233
    31589 1sln:A (2.27) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 8535233
    31590 1sln:A (2.27) BS03 CA 3.4.24.17 GO:0004222 ... P08254 8535233
    31591 1sln:A (2.27) BS04 CA 3.4.24.17 GO:0004222 ... P08254 8535233
    31592 1sln:A (2.27) BS05 CA 3.4.24.17 GO:0004222 ... P08254 8535233
    31593 1sln:A (2.27) BS06 8MI 3.4.24.17 GO:0004222 ... P08254 8535233
    31594 1slt:A (1.9) BS01 GAL ? GO:0005576 ... P11116 8108426
    31595 1slt:B (1.9) BS01 GAL ? GO:0005576 ... P11116 8108426
    31596 1slu:B (1.8) BS01 CA 3.4.21.4 GO:0004252 ... P00763 8634241
    31597 1slv:B (2.3) BS01 CA 3.4.21.4 GO:0004252 ... P00763 8634241
    31598 1slv:B (2.3) BS02 CU 3.4.21.4 GO:0004252 ... P00763 8634241
    31599 1slw:B (2.0) BS01 CA 3.4.21.4 GO:0004252 ... P00763 8634241
    31600 1slx:B (2.2) BS01 CA 3.4.21.4 GO:0004252 ... P00763 8634241
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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