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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    28201 1qmq:A (1.55) BS02 DRB 1.14.15.1 GO:0004497 ... P00183 10557259
    28202 1qmq:A (1.55) BS03 DRB 1.14.15.1 GO:0004497 ... P00183 10557259
    28203 1qmu:A (2.7) BS01 ZN 3.4.17.22 GO:0004180 ... P83852 10545093
    28204 1qmz:A (2.2) BS01 peptide 2.7.11.22 GO:0000082 ... P24941 10559988
    28205 1qmz:A (2.2) BS02 ATP 2.7.11.22 GO:0000082 ... P24941 10559988
    28206 1qmz:A (2.2) BS03 MG 2.7.11.22 GO:0000082 ... P24941 10559988
    28207 1qmz:C (2.2) BS01 peptide 2.7.11.22 GO:0000082 ... P24941 10559988
    28208 1qmz:C (2.2) BS02 ATP 2.7.11.22 GO:0000082 ... P24941 10559988
    28209 1qmz:C (2.2) BS03 MG 2.7.11.22 GO:0000082 ... P24941 10559988
    28210 1qn3:A (1.95) BS01 dna ? GO:0003677 ... P28147 10617571
    28211 1qn3:A (1.95) BS02 dna ? GO:0003677 ... P28147 10617571
    28212 1qn3:B (1.95) BS01 dna ? GO:0003677 ... P28147 10617571
    28213 1qn3:B (1.95) BS02 dna ? GO:0003677 ... P28147 10617571
    28214 1qn4:A (1.86) BS01 dna ? GO:0003677 ... P28147 10617571
    28215 1qn4:A (1.86) BS02 dna ? GO:0003677 ... P28147 10617571
    28216 1qn4:B (1.86) BS01 dna ? GO:0003677 ... P28147 10617571
    28217 1qn4:B (1.86) BS02 dna ? GO:0003677 ... P28147 10617571
    28218 1qn5:A (1.93) BS01 dna ? GO:0003677 ... P28147 10617571
    28219 1qn5:A (1.93) BS02 dna ? GO:0003677 ... P28147 10617571
    28220 1qn5:B (1.93) BS01 dna ? GO:0003677 ... P28147 10617571
    28221 1qn5:B (1.93) BS02 dna ? GO:0003677 ... P28147 10617571
    28222 1qn6:A (2.1) BS01 dna ? GO:0003677 ... P28147 10617571
    28223 1qn6:A (2.1) BS02 dna ? GO:0003677 ... P28147 10617571
    28224 1qn6:B (2.1) BS01 dna ? GO:0003677 ... P28147 10617571
    28225 1qn6:B (2.1) BS02 dna ? GO:0003677 ... P28147 10617571
    28226 1qn7:A (2.3) BS01 dna ? GO:0003677 ... P28147 10617571
    28227 1qn7:A (2.3) BS02 dna ? GO:0003677 ... P28147 10617571
    28228 1qn7:B (2.3) BS01 dna ? GO:0003677 ... P28147 10617571
    28229 1qn7:B (2.3) BS02 dna ? GO:0003677 ... P28147 10617571
    28230 1qn8:A (2.1) BS01 dna ? GO:0003677 ... P28147 10617571
    28231 1qn8:A (2.1) BS02 dna ? GO:0003677 ... P28147 10617571
    28232 1qn8:B (2.1) BS01 dna ? GO:0003677 ... P28147 10617571
    28233 1qn8:B (2.1) BS02 dna ? GO:0003677 ... P28147 10617571
    28234 1qn9:A (1.9) BS01 dna ? GO:0003677 ... P28147 10617571
    28235 1qn9:A (1.9) BS02 dna ? GO:0003677 ... P28147 10617571
    28236 1qn9:B (1.9) BS01 dna ? GO:0003677 ... P28147 10617571
    28237 1qn9:B (1.9) BS02 dna ? GO:0003677 ... P28147 10617571
    28238 1qna:A (1.8) BS01 dna ? GO:0003677 ... P28147 10617571
    28239 1qna:A (1.8) BS02 dna ? GO:0003677 ... P28147 10617571
    28240 1qna:B (1.8) BS01 dna ? GO:0003677 ... P28147 10617571
    28241 1qna:B (1.8) BS02 dna ? GO:0003677 ... P28147 10617571
    28242 1qnb:A (2.23) BS01 dna ? GO:0003677 ... P28147 10617571
    28243 1qnb:A (2.23) BS02 dna ? GO:0003677 ... P28147 10617571
    28244 1qnb:B (2.23) BS01 dna ? GO:0003677 ... P28147 10617571
    28245 1qnb:B (2.23) BS02 dna ? GO:0003677 ... P28147 10617571
    28246 1qnc:A (2.3) BS01 dna ? GO:0003677 ... P28147 10617571
    28247 1qnc:A (2.3) BS02 dna ? GO:0003677 ... P28147 10617571
    28248 1qnc:B (2.3) BS01 dna ? GO:0003677 ... P28147 10617571
    28249 1qnc:B (2.3) BS02 dna ? GO:0003677 ... P28147 10617571
    28250 1qne:A (1.9) BS01 dna ? GO:0003677 ... P28147 10617571
    28251 1qne:A (1.9) BS02 dna ? GO:0003677 ... P28147 10617571
    28252 1qne:B (1.9) BS01 dna ? GO:0003677 ... P28147 10617571
    28253 1qne:B (1.9) BS02 dna ? GO:0003677 ... P28147 10617571
    28254 1qni:A (2.4) BS01 CUA ? GO:0004129 ... Q7SIA3 10700275
    28255 1qni:A (2.4) BS02 CA ? GO:0004129 ... Q7SIA3 10700275
    28256 1qni:A (2.4) BS03 CA ? GO:0004129 ... Q7SIA3 10700275
    28257 1qni:B (2.4) BS01 CUA ? GO:0004129 ... Q7SIA3 10700275
    28258 1qni:B (2.4) BS02 CA ? GO:0004129 ... Q7SIA3 10700275
    28259 1qni:B (2.4) BS03 CA ? GO:0004129 ... Q7SIA3 10700275
    28260 1qni:C (2.4) BS01 CUA ? GO:0004129 ... Q7SIA3 10700275
    28261 1qni:C (2.4) BS02 CA ? GO:0004129 ... Q7SIA3 10700275
    28262 1qni:C (2.4) BS03 CA ? GO:0004129 ... Q7SIA3 10700275
    28263 1qni:D (2.4) BS01 CUA ? GO:0004129 ... Q7SIA3 10700275
    28264 1qni:D (2.4) BS02 CA ? GO:0004129 ... Q7SIA3 10700275
    28265 1qni:D (2.4) BS03 CA ? GO:0004129 ... Q7SIA3 10700275
    28266 1qni:E (2.4) BS01 CUA ? GO:0004129 ... Q7SIA3 10700275
    28267 1qni:E (2.4) BS02 CA ? GO:0004129 ... Q7SIA3 10700275
    28268 1qni:E (2.4) BS03 CA ? GO:0004129 ... Q7SIA3 10700275
    28269 1qni:F (2.4) BS01 CUA ? GO:0004129 ... Q7SIA3 10700275
    28270 1qni:F (2.4) BS02 CA ? GO:0004129 ... Q7SIA3 10700275
    28271 1qni:F (2.4) BS03 CA ? GO:0004129 ... Q7SIA3 10700275
    28272 1qnu:A (2.23) BS01 GAL ? GO:0005576 ... V5URS0 10688205
    28273 1qnu:A (2.23) BS02 GAL ? GO:0005576 ... V5URS0 10688205
    28274 1qnu:B (2.23) BS01 GAL ? GO:0005576 ... V5URS0 10688205
    28275 1qnu:B (2.23) BS02 GAL ? GO:0005576 ... V5URS0 10688205
    28276 1qnu:C (2.23) BS01 GAL ? GO:0005576 ... V5URS0 10688205
    28277 1qnu:C (2.23) BS02 GAL ? GO:0005576 ... V5URS0 10688205
    28278 1qnu:D (2.23) BS01 GAL ? GO:0005576 ... V5URS0 10688205
    28279 1qnu:D (2.23) BS02 GAL ? GO:0005576 ... V5URS0 10688205
    28280 1qnu:E (2.23) BS01 GAL ? GO:0005576 ... V5URS0 10688205
    28281 1qnu:E (2.23) BS02 GAL ? GO:0005576 ... V5URS0 10688205
    28282 1qnv:A (2.5) BS01 PB 4.2.1.24 GO:0004655 ... P05373 10739915
    28283 1qnz:H (-1.00) BS01 peptide ? GO:0002250 ... P01750 10801487
    28284 1qnz:L (-1.00) BS01 peptide ? GO:0002250 ... P01665 10801487
    28285 1qo4:A (3.0) BS01 HEM 1.11.1.7 GO:0002215 ... Q42578 11551197
    28286 1qo4:A (3.0) BS02 CA 1.11.1.7 GO:0002215 ... Q42578 11551197
    28287 1qo4:A (3.0) BS03 CA 1.11.1.7 GO:0002215 ... Q42578 11551197
    28288 1qo8:A (2.15) BS01 HEM 1.3.2.- GO:0008202 ... Q9Z4P0 10581549
    28289 1qo8:A (2.15) BS02 HEM 1.3.2.- GO:0008202 ... Q9Z4P0 10581549
    28290 1qo8:A (2.15) BS03 HEM 1.3.2.- GO:0008202 ... Q9Z4P0 10581549
    28291 1qo8:A (2.15) BS04 HEM 1.3.2.- GO:0008202 ... Q9Z4P0 10581549
    28292 1qo8:A (2.15) BS05 FAD 1.3.2.- GO:0008202 ... Q9Z4P0 10581549
    28293 1qo8:D (2.15) BS01 HEM 1.3.2.- GO:0008202 ... Q9Z4P0 10581549
    28294 1qo8:D (2.15) BS02 HEM 1.3.2.- GO:0008202 ... Q9Z4P0 10581549
    28295 1qo8:D (2.15) BS03 HEM 1.3.2.- GO:0008202 ... Q9Z4P0 10581549
    28296 1qo8:D (2.15) BS04 HEM 1.3.2.- GO:0008202 ... Q9Z4P0 10581549
    28297 1qo8:D (2.15) BS05 FAD 1.3.2.- GO:0008202 ... Q9Z4P0 10581549
    28298 1qop:B (1.4) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 10600108
    28299 1qop:B (1.4) BS02 NA 4.2.1.20 GO:0000162 ... P0A2K1 10600108
    28300 1qoq:A (1.8) BS01 IGP 4.2.1.20 GO:0000162 ... P00929 10600108
    28301 1qoq:B (1.8) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 10600108
    28302 1qor:A (2.2) BS01 NDP 1.6.5.5 GO:0003960 ... P28304 7602590
    28303 1qor:B (2.2) BS01 NDP 1.6.5.5 GO:0003960 ... P28304 7602590
    28304 1qov:H (2.1) BS01 CDL ? GO:0015979 ... P0C0Y7 10611277
    28305 1qov:L (2.1) BS01 BCL ? GO:0009772 ... P0C0Y8 10611277
    28306 1qov:L (2.1) BS02 BCL ? GO:0009772 ... P0C0Y8 10611277
    28307 1qov:L (2.1) BS03 U10 ? GO:0009772 ... P0C0Y8 10611277
    28308 1qov:L (2.1) BS04 BCL ? GO:0009772 ... P0C0Y8 10611277
    28309 1qov:L (2.1) BS05 BPH ? GO:0009772 ... P0C0Y8 10611277
    28310 1qov:L (2.1) BS06 BPH ? GO:0009772 ... P0C0Y8 10611277
    28311 1qov:L (2.1) BS07 FE2 ? GO:0009772 ... P0C0Y8 10611277
    28312 1qov:M (2.1) BS01 BCL ? GO:0009772 ... P0C0Y9 10611277
    28313 1qov:M (2.1) BS02 BCL ? GO:0009772 ... P0C0Y9 10611277
    28314 1qov:M (2.1) BS03 BCL ? GO:0009772 ... P0C0Y9 10611277
    28315 1qov:M (2.1) BS04 BPH ? GO:0009772 ... P0C0Y9 10611277
    28316 1qov:M (2.1) BS05 BPH ? GO:0009772 ... P0C0Y9 10611277
    28317 1qov:M (2.1) BS06 FE2 ? GO:0009772 ... P0C0Y9 10611277
    28318 1qov:M (2.1) BS07 SPN ? GO:0009772 ... P0C0Y9 10611277
    28319 1qov:M (2.1) BS08 CDL ? GO:0009772 ... P0C0Y9 10611277
    28320 1qp0:A (2.9) BS01 dna ? GO:0000976 ... P0ACP7 10438625 PDBbind: Kd=35nM
    28321 1qp0:A (2.9) BS02 HPA ? GO:0000976 ... P0ACP7 10438625
    28322 1qp4:A (3.0) BS01 dna ? GO:0000976 ... P0ACP7 10438625 PDBbind: Kd=10nM
    28323 1qp4:A (3.0) BS02 HPA ? GO:0000976 ... P0ACP7 10438625
    28324 1qp7:A (2.9) BS01 dna ? GO:0000976 ... P0ACP7 10438625 PDBbind: Kd=780nM
    28325 1qp7:A (2.9) BS02 HPA ? GO:0000976 ... P0ACP7 10438625
    28326 1qp8:A (2.8) BS01 NDP ? GO:0000166 ... Q8ZXP5 N/A
    28327 1qp8:B (2.8) BS01 NDP ? GO:0000166 ... Q8ZXP5 N/A
    28328 1qpb:A (2.4) BS01 TPP 4.1.1.-
    4.1.1.43
    4.1.1.72
    4.1.1.74
    GO:0000287 ... P06169 10651824
    28329 1qpb:A (2.4) BS02 MG 4.1.1.-
    4.1.1.43
    4.1.1.72
    4.1.1.74
    GO:0000287 ... P06169 10651824
    28330 1qpb:A (2.4) BS03 PYM 4.1.1.-
    4.1.1.43
    4.1.1.72
    4.1.1.74
    GO:0000287 ... P06169 10651824 MOAD: Kd=44mM
    PDBbind: -logKd/Ki=1.36, Kd=44mM
    28331 1qpb:A (2.4) BS04 TPP 4.1.1.-
    4.1.1.43
    4.1.1.72
    4.1.1.74
    GO:0000287 ... P06169 10651824
    28332 1qpb:B (2.4) BS01 TPP 4.1.1.-
    4.1.1.43
    4.1.1.72
    4.1.1.74
    GO:0000287 ... P06169 10651824
    28333 1qpb:B (2.4) BS02 TPP 4.1.1.-
    4.1.1.43
    4.1.1.72
    4.1.1.74
    GO:0000287 ... P06169 10651824
    28334 1qpb:B (2.4) BS03 MG 4.1.1.-
    4.1.1.43
    4.1.1.72
    4.1.1.74
    GO:0000287 ... P06169 10651824
    28335 1qpb:B (2.4) BS04 PYM 4.1.1.-
    4.1.1.43
    4.1.1.72
    4.1.1.74
    GO:0000287 ... P06169 10651824 MOAD: Kd=44mM
    PDBbind: -logKd/Ki=1.36, Kd=44mM
    28336 1qpf:A (2.5) BS01 858 5.2.1.8 GO:0000413 ... P62942 10425089 MOAD: ic50=27nM
    28337 1qpf:A (2.5) BS02 B7G 5.2.1.8 GO:0000413 ... P62942 10425089
    28338 1qpf:D (2.5) BS01 858 5.2.1.8 GO:0000413 ... P62942 10425089 MOAD: ic50=27nM
    PDBbind: -logKd/Ki=7.57, IC50=27nM
    28339 1qpg:A (2.4) BS01 MAP 2.7.2.3 GO:0004618 ... P00560 8672447
    28340 1qpl:A (2.9) BS01 587 5.2.1.8 GO:0000413 ... P62942 10425089 PDBbind: -logKd/Ki=8.51, IC50=3.1nM
    28341 1qpl:C (2.9) BS01 587 5.2.1.8 GO:0000413 ... P62942 10425089 PDBbind: -logKd/Ki=8.51, IC50=3.1nM
    28342 1qpn:A (2.6) BS01 NCN 2.4.2.19 GO:0004514 ... P9WJJ7 9862811
    28343 1qpn:B (2.6) BS01 NCN 2.4.2.19 GO:0004514 ... P9WJJ7 9862811
    28344 1qpn:C (2.6) BS01 NCN 2.4.2.19 GO:0004514 ... P9WJJ7 9862811
    28345 1qpn:D (2.6) BS01 NCN 2.4.2.19 GO:0004514 ... P9WJJ7 9862811
    28346 1qpn:E (2.6) BS01 NCN 2.4.2.19 GO:0004514 ... P9WJJ7 9862811
    28347 1qpn:F (2.6) BS01 NCN 2.4.2.19 GO:0004514 ... P9WJJ7 9862811
    28348 1qpq:A (2.45) BS01 NTM 2.4.2.19 GO:0004514 ... P9WJJ7 9862811
    28349 1qpq:B (2.45) BS01 NTM 2.4.2.19 GO:0004514 ... P9WJJ7 9862811
    28350 1qpq:C (2.45) BS01 NTM 2.4.2.19 GO:0004514 ... P9WJJ7 9862811
    28351 1qpq:D (2.45) BS01 NTM 2.4.2.19 GO:0004514 ... P9WJJ7 9862811
    28352 1qpq:E (2.45) BS01 NTM 2.4.2.19 GO:0004514 ... P9WJJ7 9862811
    28353 1qpq:F (2.45) BS01 NTM 2.4.2.19 GO:0004514 ... P9WJJ7 9862811
    28354 1qpr:A (2.45) BS01 MN 2.4.2.19 GO:0004514 ... P9WJJ7 9862811
    28355 1qpr:A (2.45) BS02 PHT 2.4.2.19 GO:0004514 ... P9WJJ7 9862811
    28356 1qpr:A (2.45) BS03 PPC 2.4.2.19 GO:0004514 ... P9WJJ7 9862811
    28357 1qpr:B (2.45) BS01 MN 2.4.2.19 GO:0004514 ... P9WJJ7 9862811
    28358 1qpr:B (2.45) BS02 PHT 2.4.2.19 GO:0004514 ... P9WJJ7 9862811
    28359 1qpr:B (2.45) BS03 PPC 2.4.2.19 GO:0004514 ... P9WJJ7 9862811
    28360 1qpr:C (2.45) BS01 MN 2.4.2.19 GO:0004514 ... P9WJJ7 9862811
    28361 1qpr:C (2.45) BS02 PHT 2.4.2.19 GO:0004514 ... P9WJJ7 9862811
    28362 1qpr:C (2.45) BS03 PPC 2.4.2.19 GO:0004514 ... P9WJJ7 9862811
    28363 1qpr:D (2.45) BS01 MN 2.4.2.19 GO:0004514 ... P9WJJ7 9862811
    28364 1qpr:D (2.45) BS02 PPC 2.4.2.19 GO:0004514 ... P9WJJ7 9862811
    28365 1qpr:D (2.45) BS03 PHT 2.4.2.19 GO:0004514 ... P9WJJ7 9862811
    28366 1qpr:E (2.45) BS01 PHT 2.4.2.19 GO:0004514 ... P9WJJ7 9862811
    28367 1qpr:E (2.45) BS02 PPC 2.4.2.19 GO:0004514 ... P9WJJ7 9862811
    28368 1qpr:F (2.45) BS01 MN 2.4.2.19 GO:0004514 ... P9WJJ7 9862811
    28369 1qpr:F (2.45) BS02 PHT 2.4.2.19 GO:0004514 ... P9WJJ7 9862811
    28370 1qpr:F (2.45) BS03 PPC 2.4.2.19 GO:0004514 ... P9WJJ7 9862811
    28371 1qpu:A (-1.00) BS01 HEM ? GO:0005506 ... P0ABE7 10393541
    28372 1qpw:A (1.8) BS01 HEM ? GO:0004601 ... P01965 10713517
    28373 1qpw:B (1.8) BS01 HEM ? GO:0004601 ... P02067 10713517
    28374 1qpw:C (1.8) BS01 HEM ? GO:0004601 ... P01965 10713517
    28375 1qpw:C (1.8) BS02 OXY ? GO:0004601 ... P01965 10713517
    28376 1qpw:D (1.8) BS01 HEM ? GO:0004601 ... P02067 10713517
    28377 1qpz:A (2.5) BS01 dna ? GO:0000976 ... P0ACP7 10438625 PDBbind: Kd=2.6nM
    28378 1qpz:A (2.5) BS02 HPA ? GO:0000976 ... P0ACP7 10438625
    28379 1qq3:A (-1.00) BS01 HEB ? GO:0005506 ... P0ABE7 10684632
    28380 1qqa:A (3.0) BS01 dna ? GO:0000976 ... P0ACP7 10438625 PDBbind: Kd=400nM
    28381 1qqa:A (3.0) BS02 HPA ? GO:0000976 ... P0ACP7 10438625
    28382 1qqb:A (2.7) BS01 dna ? GO:0000976 ... P0ACP7 10438625 PDBbind: Kd=2000nM
    28383 1qqb:A (2.7) BS02 HPA ? GO:0000976 ... P0ACP7 10438625
    28384 1qqu:A (1.63) BS01 CA 3.4.21.4 GO:0004252 ... P00761 10561533
    28385 1qqu:A (1.63) BS02 ACT 3.4.21.4 GO:0004252 ... P00761 10561533
    28386 1qqw:A (2.75) BS01 HEM 1.11.1.6 GO:0000302 ... P04040 10666617
    28387 1qqw:B (2.75) BS01 HEM 1.11.1.6 GO:0000302 ... P04040 10666617
    28388 1qqw:C (2.75) BS01 HEM 1.11.1.6 GO:0000302 ... P04040 10666617
    28389 1qqw:D (2.75) BS01 HEM 1.11.1.6 GO:0000302 ... P04040 10666617
    28390 1qr0:A (1.9) BS01 MG 2.7.8.7 GO:0000287 ... P39135 10581256
    28391 1qr0:A (1.9) BS02 COA 2.7.8.7 GO:0000287 ... P39135 10581256
    28392 1qr2:A (2.1) BS01 ZN 1.10.5.1 GO:0001512 ... P16083 10433694
    28393 1qr2:A (2.1) BS02 FAD 1.10.5.1 GO:0001512 ... P16083 10433694
    28394 1qr2:B (2.1) BS01 ZN 1.10.5.1 GO:0001512 ... P16083 10433694
    28395 1qr2:B (2.1) BS02 FAD 1.10.5.1 GO:0001512 ... P16083 10433694
    28396 1qr3:E (1.6) BS01 peptide 3.4.21.36 GO:0004252 ... P00772 10738204
    28397 1qr3:E (1.6) BS02 CA 3.4.21.36 GO:0004252 ... P00772 10738204
    28398 1qr6:A (2.1) BS01 NAD 1.1.1.38 GO:0004470 ... P23368 10467136
    28399 1qr6:A (2.1) BS02 NAD 1.1.1.38 GO:0004470 ... P23368 10467136
    28400 1qr6:B (2.1) BS01 NAD 1.1.1.38 GO:0004470 ... P23368 10467136

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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