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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    27401 1q6i:A (2.25) BS01 FK5 5.2.1.8 GO:0003755 ... P45523 14672666
    27402 1q6i:B (2.25) BS01 FK5 5.2.1.8 GO:0003755 ... P45523 14672666
    27403 1q74:A (1.7) BS01 ZN 3.5.1.103 GO:0005886 ... P9WJN3 12958317
    27404 1q74:B (1.7) BS01 ZN 3.5.1.103 GO:0005886 ... P9WJN3 12958317
    27405 1q74:C (1.7) BS01 ZN 3.5.1.103 GO:0005886 ... P9WJN3 12958317
    27406 1q74:D (1.7) BS01 ZN 3.5.1.103 GO:0005886 ... P9WJN3 12958317
    27407 1q78:A (2.8) BS01 3AT 2.7.7.19 GO:0003723 ... P25500 15328606
    27408 1q79:A (2.15) BS01 MN 2.7.7.19 GO:0003723 ... P25500 15328606
    27409 1q79:A (2.15) BS02 MN 2.7.7.19 GO:0003723 ... P25500 15328606
    27410 1q79:A (2.15) BS03 3AT 2.7.7.19 GO:0003723 ... P25500 15328606
    27411 1q7a:A (1.6) BS01 SO4 3.1.1.4 GO:0004623 ... P59071 15544328
    27412 1q7a:A (1.6) BS02 OPB 3.1.1.4 GO:0004623 ... P59071 15544328 MOAD: Kd=0.000000064M
    PDBbind: -logKd/Ki=7.19, Kd=64nM
    27413 1q7b:A (2.05) BS01 CA 1.1.1.100 GO:0004316 ... P0AEK2 15016358
    27414 1q7b:A (2.05) BS02 NAP 1.1.1.100 GO:0004316 ... P0AEK2 15016358 MOAD: Kd=3.5uM
    27415 1q7b:B (2.05) BS01 CA 1.1.1.100 GO:0004316 ... P0AEK2 15016358
    27416 1q7b:B (2.05) BS02 CA 1.1.1.100 GO:0004316 ... P0AEK2 15016358
    27417 1q7b:B (2.05) BS03 NAP 1.1.1.100 GO:0004316 ... P0AEK2 15016358 MOAD: Kd=3.5uM
    27418 1q7b:C (2.05) BS01 CA 1.1.1.100 GO:0004316 ... P0AEK2 15016358
    27419 1q7b:C (2.05) BS02 NAP 1.1.1.100 GO:0004316 ... P0AEK2 15016358 MOAD: Kd=3.5uM
    27420 1q7b:D (2.05) BS01 CA 1.1.1.100 GO:0004316 ... P0AEK2 15016358
    27421 1q7b:D (2.05) BS02 NAP 1.1.1.100 GO:0004316 ... P0AEK2 15016358 MOAD: Kd=3.5uM
    27422 1q7c:A (2.5) BS01 NDP 1.1.1.100 GO:0004316 ... P0AEK2 15016358
    27423 1q7c:B (2.5) BS01 NDP 1.1.1.100 GO:0004316 ... P0AEK2 15016358
    27424 1q7g:A (2.6) BS01 NHO 1.1.1.3 GO:0004412 ... P31116 14583265
    27425 1q7l:A (1.4) BS01 ZN 3.5.1.14 GO:0004046 ... Q03154 12933810
    27426 1q7l:A (1.4) BS02 ZN 3.5.1.14 GO:0004046 ... Q03154 12933810
    27427 1q7l:A (1.4) BS03 GLY 3.5.1.14 GO:0004046 ... Q03154 12933810
    27428 1q7l:C (1.4) BS01 ZN 3.5.1.14 GO:0004046 ... Q03154 12933810
    27429 1q7l:C (1.4) BS02 ZN 3.5.1.14 GO:0004046 ... Q03154 12933810
    27430 1q7l:C (1.4) BS03 GLY 3.5.1.14 GO:0004046 ... Q03154 12933810
    27431 1q7t:A (1.9) BS01 BOG 3.5.1.103 GO:0005886 ... P9WJN3 14698305
    27432 1q7t:A (1.9) BS02 BOG 3.5.1.103 GO:0005886 ... P9WJN3 14698305
    27433 1q7t:B (1.9) BS01 BOG 3.5.1.103 GO:0005886 ... P9WJN3 14698305
    27434 1q7t:B (1.9) BS02 BOG 3.5.1.103 GO:0005886 ... P9WJN3 14698305
    27435 1q7y:1 (3.2) BS01 rna ? GO:0003735 ... P60619 12185246
    27436 1q7y:2 (3.2) BS01 rna ? GO:0003723 ... P32410 12185246
    27437 1q7y:3 (3.2) BS01 rna ? GO:0003735 ... P22452 12185246
    27438 1q7y:4 (3.2) BS01 rna ? GO:0000049 ... P32411 12185246
    27439 1q7y:4 (3.2) BS02 MG ? GO:0000049 ... P32411 12185246
    27440 1q7y:C (3.2) BS01 rna ? GO:0002181 ... P20276 12185246
    27441 1q7y:C (3.2) BS02 MG ? GO:0002181 ... P20276 12185246
    27442 1q7y:D (3.2) BS01 rna ? GO:0003723 ... P20279 12185246
    27443 1q7y:E (3.2) BS01 rna ? GO:0003723 ... P12735 12185246
    27444 1q7y:F (3.2) BS01 rna ? GO:0000049 ... P14124 12185246
    27445 1q7y:F (3.2) BS02 rna ? GO:0000049 ... P14124 12185246
    27446 1q7y:G (3.2) BS01 rna ? GO:0002181 ... P14135 12185246
    27447 1q7y:H (3.2) BS01 rna ? GO:0001682 ... P12743 12185246
    27448 1q7y:J (3.2) BS01 rna ? GO:0000027 ... P60617 12185246
    27449 1q7y:K (3.2) BS01 rna ? GO:0003729 ... P29198 12185246
    27450 1q7y:L (3.2) BS01 rna ? GO:0003735 ... P22450 12185246
    27451 1q7y:M (3.2) BS01 rna ? GO:0003735 ... P12737 12185246
    27452 1q7y:N (3.2) BS01 rna ? GO:0002181 ... P60618 12185246
    27453 1q7y:O (3.2) BS01 rna ? GO:0000027 ... P14123 12185246
    27454 1q7y:O (3.2) BS02 rna ? GO:0000027 ... P14123 12185246
    27455 1q7y:P (3.2) BS01 rna ? GO:0003723 ... P12733 12185246
    27456 1q7y:Q (3.2) BS01 rna ? GO:0003723 ... P14119 12185246
    27457 1q7y:R (3.2) BS01 rna ? GO:0003735 ... P12734 12185246
    27458 1q7y:R (3.2) BS02 rna ? GO:0003735 ... P12734 12185246
    27459 1q7y:S (3.2) BS01 rna ? GO:0002181 ... P10970 12185246
    27460 1q7y:T (3.2) BS01 rna ? GO:0000027 ... P12732 12185246
    27461 1q7y:U (3.2) BS01 rna ? GO:0002181 ... P10972 12185246
    27462 1q7y:U (3.2) BS02 MG ? GO:0002181 ... P10972 12185246
    27463 1q7y:V (3.2) BS01 rna ? GO:0003735 ... P14116 12185246
    27464 1q7y:W (3.2) BS01 rna ? GO:0003735 ... P10971 12185246
    27465 1q7y:X (3.2) BS01 rna ? GO:0000463 ... P14121 12185246
    27466 1q7y:X (3.2) BS02 rna ? GO:0000463 ... P14121 12185246
    27467 1q7y:Y (3.2) BS01 rna ? GO:0002181 ... P18138 12185246
    27468 1q7y:Z (3.2) BS01 rna ? GO:0000166 ... P12736 12185246
    27469 1q7y:Z (3.2) BS02 MG ? GO:0000166 ... P12736 12185246
    27470 1q81:1 (2.95) BS01 rna ? GO:0003735 ... P60619 12185246
    27471 1q81:2 (2.95) BS01 rna ? GO:0003723 ... P32410 12185246
    27472 1q81:3 (2.95) BS01 rna ? GO:0003735 ... P22452 12185246
    27473 1q81:4 (2.95) BS01 rna ? GO:0000049 ... P32411 12185246
    27474 1q81:4 (2.95) BS02 MG ? GO:0000049 ... P32411 12185246
    27475 1q81:C (2.95) BS01 rna ? GO:0002181 ... P20276 12185246
    27476 1q81:C (2.95) BS02 MG ? GO:0002181 ... P20276 12185246
    27477 1q81:D (2.95) BS01 rna ? GO:0003723 ... P20279 12185246
    27478 1q81:E (2.95) BS01 rna ? GO:0003723 ... P12735 12185246
    27479 1q81:F (2.95) BS01 rna ? GO:0000049 ... P14124 12185246
    27480 1q81:F (2.95) BS02 rna ? GO:0000049 ... P14124 12185246
    27481 1q81:G (2.95) BS01 rna ? GO:0002181 ... P14135 12185246
    27482 1q81:H (2.95) BS01 rna ? GO:0001682 ... P12743 12185246
    27483 1q81:J (2.95) BS01 rna ? GO:0000027 ... P60617 12185246
    27484 1q81:K (2.95) BS01 rna ? GO:0003729 ... P29198 12185246
    27485 1q81:L (2.95) BS01 rna ? GO:0003735 ... P22450 12185246
    27486 1q81:M (2.95) BS01 rna ? GO:0003735 ... P12737 12185246
    27487 1q81:N (2.95) BS01 rna ? GO:0002181 ... P60618 12185246
    27488 1q81:O (2.95) BS01 rna ? GO:0000027 ... P14123 12185246
    27489 1q81:O (2.95) BS02 rna ? GO:0000027 ... P14123 12185246
    27490 1q81:P (2.95) BS01 rna ? GO:0003723 ... P12733 12185246
    27491 1q81:Q (2.95) BS01 rna ? GO:0003723 ... P14119 12185246
    27492 1q81:R (2.95) BS01 rna ? GO:0003735 ... P12734 12185246
    27493 1q81:R (2.95) BS02 rna ? GO:0003735 ... P12734 12185246
    27494 1q81:S (2.95) BS01 rna ? GO:0002181 ... P10970 12185246
    27495 1q81:T (2.95) BS01 rna ? GO:0000027 ... P12732 12185246
    27496 1q81:U (2.95) BS01 rna ? GO:0002181 ... P10972 12185246
    27497 1q81:U (2.95) BS02 MG ? GO:0002181 ... P10972 12185246
    27498 1q81:V (2.95) BS01 rna ? GO:0003735 ... P14116 12185246
    27499 1q81:W (2.95) BS01 rna ? GO:0003735 ... P10971 12185246
    27500 1q81:X (2.95) BS01 rna ? GO:0000463 ... P14121 12185246
    27501 1q81:X (2.95) BS02 rna ? GO:0000463 ... P14121 12185246
    27502 1q81:Y (2.95) BS01 rna ? GO:0002181 ... P18138 12185246
    27503 1q81:Z (2.95) BS01 rna ? GO:0000166 ... P12736 12185246
    27504 1q81:Z (2.95) BS02 MG ? GO:0000166 ... P12736 12185246
    27505 1q82:1 (2.98) BS01 rna ? GO:0003735 ... P60619 12185246
    27506 1q82:2 (2.98) BS01 rna ? GO:0003723 ... P32410 12185246
    27507 1q82:3 (2.98) BS01 rna ? GO:0003735 ... P22452 12185246
    27508 1q82:4 (2.98) BS01 rna ? GO:0000049 ... P32411 12185246
    27509 1q82:4 (2.98) BS02 MG ? GO:0000049 ... P32411 12185246
    27510 1q82:C (2.98) BS01 rna ? GO:0002181 ... P20276 12185246
    27511 1q82:C (2.98) BS02 MG ? GO:0002181 ... P20276 12185246
    27512 1q82:D (2.98) BS01 rna ? GO:0003723 ... P20279 12185246
    27513 1q82:E (2.98) BS01 rna ? GO:0003723 ... P12735 12185246
    27514 1q82:F (2.98) BS01 rna ? GO:0000049 ... P14124 12185246
    27515 1q82:F (2.98) BS02 rna ? GO:0000049 ... P14124 12185246
    27516 1q82:G (2.98) BS01 rna ? GO:0002181 ... P14135 12185246
    27517 1q82:H (2.98) BS01 rna ? GO:0001682 ... P12743 12185246
    27518 1q82:J (2.98) BS01 rna ? GO:0000027 ... P60617 12185246
    27519 1q82:K (2.98) BS01 rna ? GO:0003729 ... P29198 12185246
    27520 1q82:L (2.98) BS01 rna ? GO:0003735 ... P22450 12185246
    27521 1q82:M (2.98) BS01 rna ? GO:0003735 ... P12737 12185246
    27522 1q82:N (2.98) BS01 rna ? GO:0002181 ... P60618 12185246
    27523 1q82:O (2.98) BS01 rna ? GO:0000027 ... P14123 12185246
    27524 1q82:O (2.98) BS02 rna ? GO:0000027 ... P14123 12185246
    27525 1q82:P (2.98) BS01 rna ? GO:0003723 ... P12733 12185246
    27526 1q82:Q (2.98) BS01 rna ? GO:0003723 ... P14119 12185246
    27527 1q82:R (2.98) BS01 rna ? GO:0003735 ... P12734 12185246
    27528 1q82:R (2.98) BS02 rna ? GO:0003735 ... P12734 12185246
    27529 1q82:S (2.98) BS01 rna ? GO:0002181 ... P10970 12185246
    27530 1q82:T (2.98) BS01 rna ? GO:0000027 ... P12732 12185246
    27531 1q82:U (2.98) BS01 rna ? GO:0002181 ... P10972 12185246
    27532 1q82:U (2.98) BS02 MG ? GO:0002181 ... P10972 12185246
    27533 1q82:V (2.98) BS01 rna ? GO:0003735 ... P14116 12185246
    27534 1q82:W (2.98) BS01 rna ? GO:0003735 ... P10971 12185246
    27535 1q82:X (2.98) BS01 rna ? GO:0000463 ... P14121 12185246
    27536 1q82:X (2.98) BS02 rna ? GO:0000463 ... P14121 12185246
    27537 1q82:Y (2.98) BS01 rna ? GO:0002181 ... P18138 12185246
    27538 1q82:Z (2.98) BS01 rna ? GO:0000166 ... P12736 12185246
    27539 1q82:Z (2.98) BS02 MG ? GO:0000166 ... P12736 12185246
    27540 1q86:1 (3.0) BS01 rna ? GO:0003735 ... P60619 12185246
    27541 1q86:2 (3.0) BS01 rna ? GO:0003723 ... P32410 12185246
    27542 1q86:3 (3.0) BS01 rna ? GO:0003735 ... P22452 12185246
    27543 1q86:4 (3.0) BS01 rna ? GO:0000049 ... P32411 12185246
    27544 1q86:4 (3.0) BS02 MG ? GO:0000049 ... P32411 12185246
    27545 1q86:C (3.0) BS01 rna ? GO:0002181 ... P20276 12185246
    27546 1q86:C (3.0) BS02 MG ? GO:0002181 ... P20276 12185246
    27547 1q86:D (3.0) BS01 rna ? GO:0003723 ... P20279 12185246
    27548 1q86:E (3.0) BS01 rna ? GO:0003723 ... P12735 12185246
    27549 1q86:F (3.0) BS01 rna ? GO:0000049 ... P14124 12185246
    27550 1q86:F (3.0) BS02 rna ? GO:0000049 ... P14124 12185246
    27551 1q86:G (3.0) BS01 rna ? GO:0002181 ... P14135 12185246
    27552 1q86:H (3.0) BS01 rna ? GO:0001682 ... P12743 12185246
    27553 1q86:J (3.0) BS01 rna ? GO:0000027 ... P60617 12185246
    27554 1q86:K (3.0) BS01 rna ? GO:0003729 ... P29198 12185246
    27555 1q86:L (3.0) BS01 rna ? GO:0003735 ... P22450 12185246
    27556 1q86:M (3.0) BS01 rna ? GO:0003735 ... P12737 12185246
    27557 1q86:N (3.0) BS01 rna ? GO:0002181 ... P60618 12185246
    27558 1q86:O (3.0) BS01 rna ? GO:0000027 ... P14123 12185246
    27559 1q86:O (3.0) BS02 rna ? GO:0000027 ... P14123 12185246
    27560 1q86:P (3.0) BS01 rna ? GO:0003723 ... P12733 12185246
    27561 1q86:Q (3.0) BS01 rna ? GO:0003723 ... P14119 12185246
    27562 1q86:R (3.0) BS01 rna ? GO:0003735 ... P12734 12185246
    27563 1q86:R (3.0) BS02 rna ? GO:0003735 ... P12734 12185246
    27564 1q86:S (3.0) BS01 rna ? GO:0002181 ... P10970 12185246
    27565 1q86:T (3.0) BS01 rna ? GO:0000027 ... P12732 12185246
    27566 1q86:U (3.0) BS01 rna ? GO:0002181 ... P10972 12185246
    27567 1q86:U (3.0) BS02 MG ? GO:0002181 ... P10972 12185246
    27568 1q86:V (3.0) BS01 rna ? GO:0003735 ... P14116 12185246
    27569 1q86:W (3.0) BS01 rna ? GO:0003735 ... P10971 12185246
    27570 1q86:X (3.0) BS01 rna ? GO:0000463 ... P14121 12185246
    27571 1q86:X (3.0) BS02 rna ? GO:0000463 ... P14121 12185246
    27572 1q86:Y (3.0) BS01 rna ? GO:0002181 ... P18138 12185246
    27573 1q86:Z (3.0) BS01 rna ? GO:0000166 ... P12736 12185246
    27574 1q86:Z (3.0) BS02 MG ? GO:0000166 ... P12736 12185246
    27575 1q8f:A (1.7) BS01 CA 3.2.2.8 GO:0005509 ... P33022 15130467
    27576 1q8f:B (1.7) BS01 CA 3.2.2.8 GO:0005509 ... P33022 15130467
    27577 1q8f:C (1.7) BS01 CA 3.2.2.8 GO:0005509 ... P33022 15130467
    27578 1q8f:D (1.7) BS01 CA 3.2.2.8 GO:0005509 ... P33022 15130467
    27579 1q8h:A (2.0) BS01 CA ? GO:0001649 ... Q8HYY9 14586470
    27580 1q8h:A (2.0) BS02 CA ? GO:0001649 ... Q8HYY9 14586470
    27581 1q8t:A (2.0) BS01 peptide 2.7.11.11 GO:0001669 ... P00517 14656443
    27582 1q8t:A (2.0) BS02 Y27 2.7.11.11 GO:0001669 ... P00517 14656443 MOAD: Kd=17.5uM
    PDBbind: -logKd/Ki=4.76, Kd=17.5uM
    BindingDB: IC50=42000nM
    27583 1q8u:A (1.9) BS01 peptide 2.7.11.11 GO:0001669 ... P00517 14656443
    27584 1q8u:A (1.9) BS02 H52 2.7.11.11 GO:0001669 ... P00517 14656443 MOAD: Kd=1.1uM
    PDBbind: -logKd/Ki=5.96, Kd=1.1uM
    BindingDB: IC50=394nM
    27585 1q8u:A (1.9) BS03 H52 2.7.11.11 GO:0001669 ... P00517 14656443 MOAD: Kd=1.1uM
    PDBbind: -logKd/Ki=5.96, Kd=1.1uM
    BindingDB: IC50=394nM
    27586 1q8w:A (2.2) BS01 peptide 2.7.11.11 GO:0001669 ... P00517 14656443
    27587 1q8w:A (2.2) BS02 M77 2.7.11.11 GO:0001669 ... P00517 14656443 MOAD: Kd=5.7uM
    PDBbind: -logKd/Ki=5.24, Kd=5.7uM
    BindingDB: IC50=1494nM
    27588 1q90:A (3.1) BS01 HEC ? GO:0005506 ... P23577 14647374
    27589 1q90:B (3.1) BS01 HEC ? GO:0009055 ... Q00471 14647374
    27590 1q90:B (3.1) BS02 HEC ? GO:0009055 ... Q00471 14647374
    27591 1q90:B (3.1) BS03 HEC ? GO:0009055 ... Q00471 14647374
    27592 1q90:B (3.1) BS04 BCR ? GO:0009055 ... Q00471 14647374
    27593 1q90:B (3.1) BS05 CLA ? GO:0009055 ... Q00471 14647374
    27594 1q90:B (3.1) BS06 TDS ? GO:0009055 ... Q00471 14647374
    27595 1q90:C (3.1) BS01 FES 7.1.1.6 GO:0016020 ... P49728 14647374
    27596 1q90:D (3.1) BS01 HEC ? GO:0005739 ... P23230 14647374
    27597 1q90:D (3.1) BS02 CLA ? GO:0005739 ... P23230 14647374
    27598 1q90:D (3.1) BS03 TDS ? GO:0005739 ... P23230 14647374
    27599 1q90:G (3.1) BS01 BCR ? GO:0009507 ... Q08362 14647374
    27600 1q90:M (3.1) BS01 BCR ? GO:0009512 ... Q42496 14647374
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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