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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    24801 1olt:A (2.07) BS03 SAM 1.3.98.3 GO:0003824 ... P32131 14633981
    24802 1olu:A (1.9) BS01 MG 1.2.4.4 GO:0003863 ... P12694 12902323
    24803 1olu:A (1.9) BS02 TPP 1.2.4.4 GO:0003863 ... P12694 12902323
    24804 1olx:A (2.25) BS01 MN 1.2.4.4 GO:0003863 ... P12694 12902323
    24805 1olx:A (2.25) BS02 TPP 1.2.4.4 GO:0003863 ... P12694 12902323
    24806 1om1:A (1.68) BS01 IQA 2.7.11.1 GO:0004672 ... P28523 12816539 MOAD: Ki=0.17uM
    PDBbind: -logKd/Ki=6.77, Ki=0.17uM
    24807 1om2:A (-1.00) BS01 peptide ? GO:0005742 ... Q62760 10721992
    24808 1om6:A (2.0) BS01 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    24809 1om6:A (2.0) BS02 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    24810 1om6:A (2.0) BS03 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    24811 1om6:A (2.0) BS04 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    24812 1om6:A (2.0) BS05 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    24813 1om6:A (2.0) BS06 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    24814 1om7:A (2.8) BS01 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    24815 1om7:A (2.8) BS02 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    24816 1om7:A (2.8) BS03 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    24817 1om7:A (2.8) BS04 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    24818 1om7:A (2.8) BS05 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    24819 1om8:A (2.0) BS01 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    24820 1om8:A (2.0) BS02 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    24821 1om8:A (2.0) BS03 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    24822 1om8:A (2.0) BS04 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    24823 1om8:A (2.0) BS05 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    24824 1om8:A (2.0) BS06 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    24825 1om9:A (2.5) BS01 peptide ? GO:0005802 ... Q9UJY5 12858163
    24826 1om9:B (2.5) BS01 peptide ? GO:0005802 ... Q9UJY5 12858163
    24827 1omd:A (1.85) BS01 CA ? GO:0005509 ... P02631 2231727
    24828 1omd:A (1.85) BS02 CA ? GO:0005509 ... P02631 2231727
    24829 1omd:A (1.85) BS03 CA ? GO:0005509 ... P02631 2231727
    24830 1omj:A (2.38) BS01 ZN 3.4.24.40 GO:0004222 ... O69771 12837794
    24831 1omj:A (2.38) BS02 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    24832 1omj:A (2.38) BS03 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    24833 1omj:A (2.38) BS04 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    24834 1omj:A (2.38) BS05 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    24835 1omj:A (2.38) BS06 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    24836 1omj:A (2.38) BS07 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    24837 1omj:A (2.38) BS08 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    24838 1omj:A (2.38) BS09 CA 3.4.24.40 GO:0004222 ... O69771 12837794
    24839 1omo:A (2.32) BS01 NAD 1.4.1.1 GO:0000166 ... O28608 15313611
    24840 1omo:B (2.32) BS01 NAD 1.4.1.1 GO:0000166 ... O28608 15313611
    24841 1omr:A (1.5) BS01 CA ? GO:0001750 ... P21457 12686556
    24842 1omv:A (1.9) BS01 CA ? GO:0001750 ... P21457 12686556
    24843 1omz:A (2.1) BS01 UD2 2.4.1.223 GO:0016020 ... Q9ES89 12562774
    24844 1omz:B (2.1) BS01 UD2 2.4.1.223 GO:0016020 ... Q9ES89 12562774
    24845 1on1:A (1.75) BS01 MN ? GO:0003677 ... P54512 12847518
    24846 1on1:A (1.75) BS02 MN ? GO:0003677 ... P54512 12847518
    24847 1on1:B (1.75) BS01 MN ? GO:0003677 ... P54512 12847518
    24848 1on1:B (1.75) BS02 MN ? GO:0003677 ... P54512 12847518
    24849 1on2:A (1.61) BS01 MN ? GO:0003677 ... P54512 12847518
    24850 1on2:B (1.61) BS01 MN ? GO:0003677 ... P54512 12847518
    24851 1on3:A (1.9) BS01 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    24852 1on3:A (1.9) BS02 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    24853 1on3:B (1.9) BS01 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    24854 1on3:B (1.9) BS02 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    24855 1on3:C (1.9) BS01 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    24856 1on3:C (1.9) BS02 DXX 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    24857 1on3:C (1.9) BS03 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    24858 1on3:D (1.9) BS01 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    24859 1on3:D (1.9) BS02 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    24860 1on3:E (1.9) BS01 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    24861 1on3:E (1.9) BS02 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    24862 1on3:F (1.9) BS01 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    24863 1on3:F (1.9) BS02 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    24864 1on3:F (1.9) BS03 DXX 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    24865 1on6:A (2.3) BS01 UD1 2.4.1.223 GO:0016020 ... Q9ES89 12562774
    24866 1on6:B (2.3) BS01 UD1 2.4.1.223 GO:0016020 ... Q9ES89 12562774
    24867 1on8:A (2.7) BS01 BDP 2.4.1.223 GO:0016020 ... Q9ES89 12562774
    24868 1on8:A (2.7) BS02 UDP 2.4.1.223 GO:0016020 ... Q9ES89 12562774
    24869 1on8:B (2.7) BS01 BDP 2.4.1.223 GO:0016020 ... Q9ES89 12562774
    24870 1on8:B (2.7) BS02 UDP 2.4.1.223 GO:0016020 ... Q9ES89 12562774
    24871 1on9:A (2.0) BS01 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    24872 1on9:B (2.0) BS01 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    24873 1on9:C (2.0) BS01 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    24874 1on9:D (2.0) BS01 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    24875 1on9:E (2.0) BS01 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    24876 1on9:F (2.0) BS01 MCA 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    24877 1ond:Q (3.4) BS01 rna ? GO:0003735 ... Q9RXJ7 12665853
    24878 1ond:Z (3.4) BS01 rna ? GO:0003735 ... P49228 12665853
    24879 1one:A (1.8) BS01 MG 4.2.1.11 GO:0000015 ... P00924 8605183
    24880 1one:A (1.8) BS02 PEP 4.2.1.11 GO:0000015 ... P00924 8605183
    24881 1one:A (1.8) BS03 2PG 4.2.1.11 GO:0000015 ... P00924 8605183
    24882 1one:B (1.8) BS01 MG 4.2.1.11 GO:0000015 ... P00924 8605183
    24883 1one:B (1.8) BS02 PEP 4.2.1.11 GO:0000015 ... P00924 8605183
    24884 1one:B (1.8) BS03 2PG 4.2.1.11 GO:0000015 ... P00924 8605183
    24885 1onf:A (2.6) BS01 FAD 1.8.1.7 GO:0004362 ... Q94655 12729762
    24886 1onh:A (1.38) BS01 WY4 3.5.2.6 GO:0008800 ... Q59401 14609325 PDBbind: -logKd/Ki=8.21, IC50=6.2nM
    24887 1ono:A (2.5) BS01 MN 1.1.1.267 GO:0008299 ... P45568 12621040
    24888 1ono:B (2.5) BS01 MN 1.1.1.267 GO:0008299 ... P45568 12621040
    24889 1onp:A (2.5) BS01 MN 1.1.1.267 GO:0008299 ... P45568 12621040
    24890 1onp:A (2.5) BS02 FOM 1.1.1.267 GO:0008299 ... P45568 12621040 PDBbind: -logKd/Ki=7.52, IC50=0.030uM
    BindingDB: IC50=30nM
    24891 1onp:B (2.5) BS01 MN 1.1.1.267 GO:0008299 ... P45568 12621040
    24892 1onp:B (2.5) BS02 FOM 1.1.1.267 GO:0008299 ... P45568 12621040 BindingDB: IC50=30nM
    24893 1ons:A (2.2) BS01 ZN 3.1.2.-
    3.5.1.-
    3.5.1.124
    4.2.1.130
    GO:0005515 ... P31658 14500888
    24894 1onv:A (-1.00) BS01 peptide ? GO:0003677 ... P35269 12732728
    24895 1onw:A (1.65) BS01 ZN 3.4.19.- GO:0005737 ... P39377 12718528
    24896 1onw:A (1.65) BS02 ZN 3.4.19.- GO:0005737 ... P39377 12718528
    24897 1onw:B (1.65) BS01 ZN 3.4.19.- GO:0005737 ... P39377 12718528
    24898 1onw:B (1.65) BS02 ZN 3.4.19.- GO:0005737 ... P39377 12718528
    24899 1onx:A (2.1) BS01 ZN 3.4.19.- GO:0005737 ... P39377 12718528
    24900 1onx:A (2.1) BS02 ZN 3.4.19.- GO:0005737 ... P39377 12718528
    24901 1onx:A (2.1) BS03 ASP 3.4.19.- GO:0005737 ... P39377 12718528
    24902 1onx:B (2.1) BS01 ZN 3.4.19.- GO:0005737 ... P39377 12718528
    24903 1onx:B (2.1) BS02 ZN 3.4.19.- GO:0005737 ... P39377 12718528
    24904 1onx:B (2.1) BS03 ASP 3.4.19.- GO:0005737 ... P39377 12718528
    24905 1oo5:A (2.5) BS01 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    24906 1oo5:A (2.5) BS02 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    24907 1oo5:B (2.5) BS01 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    24908 1oo5:B (2.5) BS02 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    24909 1oo6:A (2.0) BS01 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    24910 1oo6:A (2.0) BS02 SN2 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    24911 1oo6:A (2.0) BS03 SN2 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    24912 1oo6:A (2.0) BS04 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    24913 1oo6:B (2.0) BS01 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    24914 1oo6:B (2.0) BS02 SN2 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    24915 1oo6:B (2.0) BS03 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    24916 1ooa:A (2.45) BS01 rna ? GO:0003677 ... P25799 12886018
    24917 1ooa:B (2.45) BS01 rna ? GO:0003677 ... P25799 12886018
    24918 1oog:A (1.45) BS01 POL ? GO:0005549 ... O02372 12881720
    24919 1oog:B (1.45) BS01 POL ? GO:0005549 ... O02372 12881720
    24920 1ooh:A (1.25) BS01 1BO ? GO:0005549 ... O02372 12881720
    24921 1ooh:B (1.25) BS01 1BO ? GO:0005549 ... O02372 12881720
    24922 1ooj:A (2.11) BS01 CA ? GO:0005509 ... O16305 14635136
    24923 1ooj:A (2.11) BS02 CA ? GO:0005509 ... O16305 14635136
    24924 1ooj:A (2.11) BS03 CA ? GO:0005509 ... O16305 14635136
    24925 1ooj:A (2.11) BS04 CA ? GO:0005509 ... O16305 14635136
    24926 1oon:A (2.49) BS01 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    24927 1oon:A (2.49) BS02 BEL 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    24928 1oon:A (2.49) BS03 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    24929 1oon:B (2.49) BS01 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    24930 1oon:B (2.49) BS02 BEL 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    24931 1oon:B (2.49) BS03 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    24932 1ooq:A (2.0) BS01 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    24933 1ooq:A (2.0) BS02 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    24934 1ooq:A (2.0) BS03 DTC 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    24935 1ooq:B (2.0) BS01 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    24936 1ooq:B (2.0) BS02 FMN 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    24937 1ooq:B (2.0) BS03 DTC 1.-.-.-
    1.5.1.34
    GO:0003955 ... P38489 12954054
    24938 1op0:A (2.0) BS01 FUC 3.4.21.- GO:0004252 ... Q9I8X1 15632114
    24939 1opb:A (1.9) BS01 RET ? GO:0005504 ... P06768 8487303 MOAD: Kd=50nM
    24940 1opb:B (1.9) BS01 RET ? GO:0005504 ... P06768 8487303 MOAD: Kd=50nM
    24941 1opb:C (1.9) BS01 RET ? GO:0005504 ... P06768 8487303 MOAD: Kd=50nM
    24942 1opb:D (1.9) BS01 RET ? GO:0005504 ... P06768 8487303 MOAD: Kd=50nM
    24943 1opm:A (2.1) BS01 CU 1.14.17.3
    4.3.2.5
    GO:0003824 ... P14925 10504734
    24944 1opm:A (2.1) BS02 AZI 1.14.17.3
    4.3.2.5
    GO:0003824 ... P14925 10504734
    24945 1opm:A (2.1) BS03 CU 1.14.17.3
    4.3.2.5
    GO:0003824 ... P14925 10504734
    24946 1opm:A (2.1) BS04 IYG 1.14.17.3
    4.3.2.5
    GO:0003824 ... P14925 10504734
    24947 1opm:A (2.1) BS05 IYG 1.14.17.3
    4.3.2.5
    GO:0003824 ... P14925 10504734
    24948 1opo:B (3.2) BS01 CA ? GO:0003723 ... P04383 8307192
    24949 1opo:C (3.2) BS01 CA ? GO:0003723 ... P04383 8307192
    24950 1opr:A (2.3) BS01 ORO 2.4.2.10 GO:0000287 ... P08870 7545004
    24951 1opr:A (2.3) BS02 PRP 2.4.2.10 GO:0000287 ... P08870 7545004
    24952 1oq4:A (2.4) BS01 FE 1.14.19.2 GO:0005515 ... P22337 12704186
    24953 1oq4:A (2.4) BS02 FE 1.14.19.2 GO:0005515 ... P22337 12704186
    24954 1oq4:A (2.4) BS03 AZI 1.14.19.2 GO:0005515 ... P22337 12704186
    24955 1oq4:B (2.4) BS01 FE 1.14.19.2 GO:0005515 ... P22337 12704186
    24956 1oq4:B (2.4) BS02 FE 1.14.19.2 GO:0005515 ... P22337 12704186
    24957 1oq4:B (2.4) BS03 AZI 1.14.19.2 GO:0005515 ... P22337 12704186
    24958 1oq4:C (2.4) BS01 FE 1.14.19.2 GO:0005515 ... P22337 12704186
    24959 1oq4:C (2.4) BS02 FE 1.14.19.2 GO:0005515 ... P22337 12704186
    24960 1oq4:C (2.4) BS03 AZI 1.14.19.2 GO:0005515 ... P22337 12704186
    24961 1oq4:D (2.4) BS01 FE 1.14.19.2 GO:0005515 ... P22337 12704186
    24962 1oq4:D (2.4) BS02 FE 1.14.19.2 GO:0005515 ... P22337 12704186
    24963 1oq4:D (2.4) BS03 AZI 1.14.19.2 GO:0005515 ... P22337 12704186
    24964 1oq4:E (2.4) BS01 FE 1.14.19.2 GO:0005515 ... P22337 12704186
    24965 1oq4:E (2.4) BS02 FE 1.14.19.2 GO:0005515 ... P22337 12704186
    24966 1oq4:E (2.4) BS03 AZI 1.14.19.2 GO:0005515 ... P22337 12704186
    24967 1oq4:F (2.4) BS01 FE 1.14.19.2 GO:0005515 ... P22337 12704186
    24968 1oq4:F (2.4) BS02 FE 1.14.19.2 GO:0005515 ... P22337 12704186
    24969 1oq4:F (2.4) BS03 AZI 1.14.19.2 GO:0005515 ... P22337 12704186
    24970 1oq5:A (1.5) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 14736236
    24971 1oq5:A (1.5) BS02 CEL 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 14736236 MOAD: ic50=21nM
    PDBbind: -logKd/Ki=7.68, IC50=21nM
    BindingDB: Ki=21nM, IC50=21nM
    24972 1oq9:A (2.4) BS01 FE 1.14.19.2 GO:0005515 ... P22337 12704186
    24973 1oq9:A (2.4) BS02 FE 1.14.19.2 GO:0005515 ... P22337 12704186
    24974 1oq9:A (2.4) BS03 ACT 1.14.19.2 GO:0005515 ... P22337 12704186
    24975 1oqb:A (2.8) BS01 FE2 1.14.19.2 GO:0005515 ... P22337 12704186
    24976 1oqb:B (2.8) BS01 FE2 1.14.19.2 GO:0005515 ... P22337 12704186
    24977 1oqb:C (2.8) BS01 FE2 1.14.19.2 GO:0005515 ... P22337 12704186
    24978 1oqb:D (2.8) BS01 FE2 1.14.19.2 GO:0005515 ... P22337 12704186
    24979 1oqb:E (2.8) BS01 FE2 1.14.19.2 GO:0005515 ... P22337 12704186
    24980 1oqb:F (2.8) BS01 FE2 1.14.19.2 GO:0005515 ... P22337 12704186
    24981 1oqd:E (2.6) BS01 peptide ? GO:0005164 ... Q9Y275 12721620
    24982 1oqd:F (2.6) BS01 peptide ? GO:0005164 ... Q9Y275 12721620
    24983 1oqe:E (2.5) BS01 peptide ? GO:0005164 ... Q9Y275 12721620
    24984 1oqe:F (2.5) BS01 peptide ? GO:0005164 ... Q9Y275 12721620
    24985 1oqg:A (1.9) BS01 CO3 ? GO:0005576 ... P02787 12795604
    24986 1oqg:A (1.9) BS02 FE ? GO:0005576 ... P02787 12795604
    24987 1oqh:A (2.4) BS01 CO3 ? GO:0005576 ... P02787 12795604
    24988 1oqh:A (2.4) BS02 FE ? GO:0005576 ... P02787 12795604
    24989 1oqm:A (2.1) BS01 CA ? GO:0004461 ... P29752 11916963
    24990 1oqm:C (2.1) BS01 CA ? GO:0004461 ... P29752 11916963
    24991 1oqq:A (1.47) BS01 FES ? GO:0005515 ... P00259 14529624
    24992 1oqq:B (1.47) BS01 FES ? GO:0005515 ... P00259 14529624
    24993 1oqr:A (1.65) BS01 FES ? GO:0005515 ... P00259 14529624
    24994 1oqr:B (1.65) BS01 FES ? GO:0005515 ... P00259 14529624
    24995 1oqr:C (1.65) BS01 FES ? GO:0005515 ... P00259 14529624
    24996 1oqu:A (2.0) BS01 FE 1.17.4.1 GO:0004748 ... O69274 15178319
    24997 1oqu:A (2.0) BS02 FE 1.17.4.1 GO:0004748 ... O69274 15178319
    24998 1oqu:A (2.0) BS03 FE 1.17.4.1 GO:0004748 ... O69274 15178319
    24999 1oqu:A (2.0) BS04 OXY 1.17.4.1 GO:0004748 ... O69274 15178319
    25000 1oqu:B (2.0) BS01 FE 1.17.4.1 GO:0004748 ... O69274 15178319

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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