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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    20201 1m8v:B (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    20202 1m8v:B (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    20203 1m8v:C (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    20204 1m8v:C (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    20205 1m8v:D (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    20206 1m8v:D (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    20207 1m8v:E (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    20208 1m8v:E (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    20209 1m8v:F (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    20210 1m8v:F (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    20211 1m8v:G (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    20212 1m8v:G (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    20213 1m8v:H (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    20214 1m8v:H (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    20215 1m8v:I (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    20216 1m8v:I (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    20217 1m8v:J (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    20218 1m8v:J (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    20219 1m8v:K (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    20220 1m8v:K (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    20221 1m8v:L (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    20222 1m8v:L (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    20223 1m8v:M (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    20224 1m8v:M (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    20225 1m8v:M (2.6) BS03 U ? GO:0000398 ... Q9V0Y8 12409299
    20226 1m8v:N (2.6) BS01 rna ? GO:0000398 ... Q9V0Y8 12409299
    20227 1m8v:N (2.6) BS02 U ? GO:0000398 ... Q9V0Y8 12409299
    20228 1m90:1 (2.8) BS01 rna ? GO:0003735 ... P60619 12185246
    20229 1m90:2 (2.8) BS01 rna ? GO:0003723 ... P32410 12185246
    20230 1m90:3 (2.8) BS01 rna ? GO:0003735 ... P22452 12185246
    20231 1m90:4 (2.8) BS01 rna ? GO:0000049 ... P32411 12185246
    20232 1m90:4 (2.8) BS02 MG ? GO:0000049 ... P32411 12185246
    20233 1m90:C (2.8) BS01 rna ? GO:0002181 ... P20276 12185246
    20234 1m90:D (2.8) BS01 rna ? GO:0003723 ... P20279 12185246
    20235 1m90:E (2.8) BS01 rna ? GO:0003723 ... P12735 12185246
    20236 1m90:F (2.8) BS01 rna ? GO:0000049 ... P14124 12185246
    20237 1m90:F (2.8) BS02 rna ? GO:0000049 ... P14124 12185246
    20238 1m90:G (2.8) BS01 rna ? GO:0002181 ... P14135 12185246
    20239 1m90:H (2.8) BS01 rna ? GO:0001682 ... P12743 12185246
    20240 1m90:J (2.8) BS01 rna ? GO:0000027 ... P60617 12185246
    20241 1m90:K (2.8) BS01 rna ? GO:0003729 ... P29198 12185246
    20242 1m90:L (2.8) BS01 rna ? GO:0003735 ... P22450 12185246
    20243 1m90:M (2.8) BS01 rna ? GO:0003735 ... P12737 12185246
    20244 1m90:N (2.8) BS01 rna ? GO:0002181 ... P60618 12185246
    20245 1m90:O (2.8) BS01 rna ? GO:0000027 ... P14123 12185246
    20246 1m90:O (2.8) BS02 rna ? GO:0000027 ... P14123 12185246
    20247 1m90:P (2.8) BS01 rna ? GO:0003723 ... P12733 12185246
    20248 1m90:Q (2.8) BS01 rna ? GO:0003723 ... P14119 12185246
    20249 1m90:R (2.8) BS01 rna ? GO:0003735 ... P12734 12185246
    20250 1m90:R (2.8) BS02 rna ? GO:0003735 ... P12734 12185246
    20251 1m90:S (2.8) BS01 rna ? GO:0002181 ... P10970 12185246
    20252 1m90:T (2.8) BS01 rna ? GO:0000027 ... P12732 12185246
    20253 1m90:U (2.8) BS01 rna ? GO:0002181 ... P10972 12185246
    20254 1m90:U (2.8) BS02 MG ? GO:0002181 ... P10972 12185246
    20255 1m90:V (2.8) BS01 rna ? GO:0003735 ... P14116 12185246
    20256 1m90:W (2.8) BS01 rna ? GO:0003735 ... P10971 12185246
    20257 1m90:X (2.8) BS01 rna ? GO:0000463 ... P14121 12185246
    20258 1m90:X (2.8) BS02 rna ? GO:0000463 ... P14121 12185246
    20259 1m90:Y (2.8) BS01 rna ? GO:0002181 ... P18138 12185246
    20260 1m90:Z (2.8) BS01 rna ? GO:0000166 ... P12736 12185246
    20261 1m90:Z (2.8) BS02 MG ? GO:0000166 ... P12736 12185246
    20262 1m9h:A (2.0) BS01 NAD 1.1.1.346 GO:0005737 ... P06632 14718658
    20263 1m9i:A (2.65) BS01 CA ? GO:0001786 ... P08133 12534274
    20264 1m9i:A (2.65) BS02 CA ? GO:0001786 ... P08133 12534274
    20265 1m9i:A (2.65) BS03 CA ? GO:0001786 ... P08133 12534274
    20266 1m9i:A (2.65) BS04 CA ? GO:0001786 ... P08133 12534274
    20267 1m9i:A (2.65) BS05 CA ? GO:0001786 ... P08133 12534274
    20268 1m9n:A (1.93) BS01 AMZ 2.1.2.3
    3.5.4.10
    GO:0003824 ... P31335 12501179
    20269 1m9n:A (1.93) BS02 XMP 2.1.2.3
    3.5.4.10
    GO:0003824 ... P31335 12501179 MOAD: Ki=0.12uM
    PDBbind: -logKd/Ki=6.92, Ki=0.12uM
    20270 1m9n:A (1.93) BS03 AMZ 2.1.2.3
    3.5.4.10
    GO:0003824 ... P31335 12501179
    20271 1m9n:B (1.93) BS01 AMZ 2.1.2.3
    3.5.4.10
    GO:0003824 ... P31335 12501179
    20272 1m9n:B (1.93) BS02 AMZ 2.1.2.3
    3.5.4.10
    GO:0003824 ... P31335 12501179
    20273 1m9n:B (1.93) BS03 XMP 2.1.2.3
    3.5.4.10
    GO:0003824 ... P31335 12501179 MOAD: Ki=0.12uM
    PDBbind: -logKd/Ki=6.92, Ki=0.12uM
    20274 1m9p:A (2.1) BS01 HEM ? GO:0004601 ... P69905 15858266
    20275 1m9p:B (2.1) BS01 HEM ? GO:0004601 ... P68871 15858266
    20276 1m9p:C (2.1) BS01 HEM ? GO:0004601 ... P69905 15858266
    20277 1m9p:D (2.1) BS01 HEM ? GO:0004601 ... P68871 15858266
    20278 1ma0:A (2.3) BS01 ZN 1.1.1.-
    1.1.1.1
    1.1.1.284
    GO:0001523 ... P11766 12196016
    20279 1ma0:A (2.3) BS02 ZN 1.1.1.-
    1.1.1.1
    1.1.1.284
    GO:0001523 ... P11766 12196016
    20280 1ma0:A (2.3) BS03 NAD 1.1.1.-
    1.1.1.1
    1.1.1.284
    GO:0001523 ... P11766 12196016
    20281 1ma0:B (2.3) BS01 ZN 1.1.1.-
    1.1.1.1
    1.1.1.284
    GO:0001523 ... P11766 12196016
    20282 1ma0:B (2.3) BS02 ZN 1.1.1.-
    1.1.1.1
    1.1.1.284
    GO:0001523 ... P11766 12196016
    20283 1ma0:B (2.3) BS03 NAD 1.1.1.-
    1.1.1.1
    1.1.1.284
    GO:0001523 ... P11766 12196016
    20284 1ma3:A (2.0) BS01 peptide 2.3.1.286 GO:0005737 ... O30124 12408821
    20285 1ma3:A (2.0) BS02 ZN 2.3.1.286 GO:0005737 ... O30124 12408821
    20286 1ma9:B (2.4) BS01 ATP 3.6.4.- GO:0000287 ... P68135 12554937
    20287 1maa:A (2.9) BS01 DME 3.1.1.7 GO:0001919 ... P21836 9915834 BindingDB: Ki=460nM
    20288 1maa:B (2.9) BS01 DME 3.1.1.7 GO:0001919 ... P21836 9915834 BindingDB: Ki=460nM
    20289 1maa:C (2.9) BS01 DME 3.1.1.7 GO:0001919 ... P21836 9915834 BindingDB: Ki=460nM
    20290 1maa:D (2.9) BS01 DME 3.1.1.7 GO:0001919 ... P21836 9915834 BindingDB: Ki=460nM
    20291 1mab:A (2.8) BS01 ATP 3.6.1.34 GO:0001937 ... P15999 9736690
    20292 1mab:B (2.8) BS01 ADP 7.1.2.2 GO:0001525 ... P10719 9736690
    20293 1mae:L (2.8) BS01 HDZ 1.4.9.1 GO:0009308 ... P22641 1390754
    20294 1maf:L (2.6) BS01 HDZ 1.4.9.1 GO:0009308 ... P22641 1390754
    20295 1map:A (2.4) BS01 KET 2.6.1.1
    2.6.1.7
    GO:0003824 ... P00508 7903048
    20296 1maq:A (2.3) BS01 PGU 2.6.1.1
    2.6.1.7
    GO:0003824 ... P00508 7903048
    20297 1mar:A (1.8) BS01 NAP 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P15121 8234324
    20298 1mat:A (2.4) BS01 CO 3.4.11.18 GO:0004177 ... P0AE18 8471602
    20299 1mat:A (2.4) BS02 CO 3.4.11.18 GO:0004177 ... P0AE18 8471602
    20300 1mau:A (2.15) BS01 ATP 6.1.1.2 GO:0000166 ... P00953 12473451 PDBbind: -logKd/Ki=11.30, Kd=5pM
    20301 1mau:A (2.15) BS02 LTN 6.1.1.2 GO:0000166 ... P00953 12473451
    20302 1maw:A (3.0) BS01 ATP 6.1.1.2 GO:0000166 ... P00953 12473451 PDBbind: -logKd/Ki=1.10, Kd=80mM
    20303 1maw:B (3.0) BS01 ATP 6.1.1.2 GO:0000166 ... P00953 12473451
    20304 1maw:C (3.0) BS01 ATP 6.1.1.2 GO:0000166 ... P00953 12473451
    20305 1maw:D (3.0) BS01 ATP 6.1.1.2 GO:0000166 ... P00953 12473451
    20306 1maw:E (3.0) BS01 ATP 6.1.1.2 GO:0000166 ... P00953 12473451
    20307 1maw:F (3.0) BS01 ATP 6.1.1.2 GO:0000166 ... P00953 12473451
    20308 1max:A (1.8) BS01 CA 3.4.21.4 GO:0004175 ... P00760 8605148
    20309 1max:A (1.8) BS02 ZAP 3.4.21.4 GO:0004175 ... P00760 8605148
    20310 1may:A (1.8) BS01 CA 3.4.21.4 GO:0004175 ... P00760 8605148
    20311 1may:A (1.8) BS02 ZAP 3.4.21.4 GO:0004175 ... P00760 8605148
    20312 1mb2:A (2.7) BS01 TRP 6.1.1.2 GO:0000166 ... P00953 12473451
    20313 1mb2:B (2.7) BS01 TRP 6.1.1.2 GO:0000166 ... P00953 12473451
    20314 1mb2:C (2.7) BS01 TRP 6.1.1.2 GO:0000166 ... P00953 12473451
    20315 1mb2:D (2.7) BS01 TRP 6.1.1.2 GO:0000166 ... P00953 12473451
    20316 1mb2:E (2.7) BS01 TRP 6.1.1.2 GO:0000166 ... P00953 12473451
    20317 1mb2:F (2.7) BS01 TRP 6.1.1.2 GO:0000166 ... P00953 12473451
    20318 1mb9:A (2.11) BS01 MG 6.3.3.4 GO:0004066 ... P0DJQ7 12409610
    20319 1mb9:A (2.11) BS02 POP 6.3.3.4 GO:0004066 ... P0DJQ7 12409610
    20320 1mb9:A (2.11) BS03 AMP 6.3.3.4 GO:0004066 ... P0DJQ7 12409610
    20321 1mb9:A (2.11) BS04 ATP 6.3.3.4 GO:0004066 ... P0DJQ7 12409610
    20322 1mb9:B (2.11) BS01 MG 6.3.3.4 GO:0004066 ... P0DJQ7 12409610
    20323 1mb9:B (2.11) BS02 ATP 6.3.3.4 GO:0004066 ... P0DJQ7 12409610
    20324 1mba:A (1.6) BS01 HEM ? GO:0005344 ... P02210 2926816
    20325 1mbb:A (2.3) BS01 EEB 1.3.1.98 GO:0005737 ... P08373 8634262
    20326 1mbb:A (2.3) BS02 FAD 1.3.1.98 GO:0005737 ... P08373 8634262
    20327 1mbc:A (1.5) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 3820301
    20328 1mbd:A (1.4) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 N/A
    20329 1mbi:A (2.0) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 1994031
    20330 1mbi:A (2.0) BS02 IMD 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 1994031
    20331 1mbn:A (2.0) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 N/A
    20332 1mbo:A (1.6) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 7463482
    20333 1mbo:A (1.6) BS02 OXY 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 7463482
    20334 1mbq:A (1.8) BS01 CA 3.4.21.4 GO:0004252 ... Q8AV11 12445776
    20335 1mbq:A (1.8) BS02 BEN 3.4.21.4 GO:0004252 ... Q8AV11 12445776
    20336 1mbs:A (2.5) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68080 745243
    20337 1mbt:A (3.0) BS01 FAD 1.3.1.98 GO:0005737 ... P08373 8805513
    20338 1mbz:A (2.47) BS01 MG 6.3.3.4 GO:0004066 ... P0DJQ7 12409610
    20339 1mbz:A (2.47) BS02 POP 6.3.3.4 GO:0004066 ... P0DJQ7 12409610
    20340 1mbz:A (2.47) BS03 IOT 6.3.3.4 GO:0004066 ... P0DJQ7 12409610
    20341 1mbz:B (2.47) BS01 MG 6.3.3.4 GO:0004066 ... P0DJQ7 12409610
    20342 1mbz:B (2.47) BS02 IOT 6.3.3.4 GO:0004066 ... P0DJQ7 12409610
    20343 1mbz:B (2.47) BS03 POP 6.3.3.4 GO:0004066 ... P0DJQ7 12409610
    20344 1mc1:A (2.16) BS01 MG 6.3.3.4 GO:0004066 ... P0DJQ7 12409610
    20345 1mc1:A (2.16) BS02 POP 6.3.3.4 GO:0004066 ... P0DJQ7 12409610
    20346 1mc1:A (2.16) BS03 AMP 6.3.3.4 GO:0004066 ... P0DJQ7 12409610
    20347 1mc1:A (2.16) BS04 PCX 6.3.3.4 GO:0004066 ... P0DJQ7 12409610
    20348 1mc1:B (2.16) BS01 MG 6.3.3.4 GO:0004066 ... P0DJQ7 12409610
    20349 1mc1:B (2.16) BS02 PCX 6.3.3.4 GO:0004066 ... P0DJQ7 12409610
    20350 1mc1:B (2.16) BS03 AMP 6.3.3.4 GO:0004066 ... P0DJQ7 12409610
    20351 1mc1:B (2.16) BS04 POP 6.3.3.4 GO:0004066 ... P0DJQ7 12409610
    20352 1mc3:A (2.6) BS01 MG 2.7.7.24 GO:0000271 ... P61887 12171937
    20353 1mc3:A (2.6) BS02 TTP 2.7.7.24 GO:0000271 ... P61887 12171937
    20354 1mc3:B (2.6) BS01 MG 2.7.7.24 GO:0000271 ... P61887 12171937
    20355 1mc3:B (2.6) BS02 TTP 2.7.7.24 GO:0000271 ... P61887 12171937
    20356 1mc5:A (2.6) BS01 ZN 1.1.1.-
    1.1.1.1
    1.1.1.284
    GO:0001523 ... P11766 12484756
    20357 1mc5:A (2.6) BS02 ZN 1.1.1.-
    1.1.1.1
    1.1.1.284
    GO:0001523 ... P11766 12484756
    20358 1mc5:A (2.6) BS03 NAD 1.1.1.-
    1.1.1.1
    1.1.1.284
    GO:0001523 ... P11766 12484756
    20359 1mc5:A (2.6) BS04 AHE 1.1.1.-
    1.1.1.1
    1.1.1.284
    GO:0001523 ... P11766 12484756
    20360 1mc5:B (2.6) BS01 ZN 1.1.1.-
    1.1.1.1
    1.1.1.284
    GO:0001523 ... P11766 12484756
    20361 1mc5:B (2.6) BS02 ZN 1.1.1.-
    1.1.1.1
    1.1.1.284
    GO:0001523 ... P11766 12484756
    20362 1mc5:B (2.6) BS03 NAD 1.1.1.-
    1.1.1.1
    1.1.1.284
    GO:0001523 ... P11766 12484756
    20363 1mcb:A (2.7) BS01 peptide ? GO:0005515 ... Q6PIK1 8346191
    20364 1mcb:B (2.7) BS01 peptide ? GO:0005515 ... Q6PIK1 8346191
    20365 1mcd:A () BS01 peptide ? GO:0002250 ... P0DOX8 8346191
    20366 1mcd:B () BS01 peptide ? GO:0002250 ... P0DOX8 8346191
    20367 1mce:A (2.7) BS01 peptide ? GO:0002250 ... P0DOX8 8346191
    20368 1mce:B (2.7) BS01 peptide ? GO:0002250 ... P0DOX8 8346191
    20369 1mcf:A (2.7) BS01 peptide ? GO:0005515 ... Q6PIK1 8346191
    20370 1mcf:B (2.7) BS01 peptide ? GO:0005515 ... Q6PIK1 8346191
    20371 1mch:A (2.7) BS01 peptide ? GO:0005515 ... Q6PIK1 8346191
    20372 1mch:B (2.7) BS01 peptide ? GO:0005515 ... Q6PIK1 8346191
    20373 1mcl:A (2.7) BS01 peptide ? GO:0005515 ... Q6PIK1 8346191
    20374 1mcl:B (2.7) BS01 peptide ? GO:0005515 ... Q6PIK1 8346191
    20375 1mcp:H (2.7) BS01 SO4 ? GO:0002250 ... P01789 3097327
    20376 1mct:A (1.6) BS01 peptide 3.4.21.4 GO:0004252 ... P00761 8445634
    20377 1mct:A (1.6) BS02 CA 3.4.21.4 GO:0004252 ... P00761 8445634
    20378 1mcv:A (1.8) BS01 peptide 3.4.21.36 GO:0004252 ... P00772 12554935
    20379 1mcv:A (1.8) BS02 CA 3.4.21.36 GO:0004252 ... P00772 12554935
    20380 1mcx:A (2.03) BS01 CA ? GO:0001786 ... P19619 12595246
    20381 1mcx:A (2.03) BS02 CA ? GO:0001786 ... P19619 12595246
    20382 1mcx:A (2.03) BS03 CA ? GO:0001786 ... P19619 12595246
    20383 1mcx:A (2.03) BS04 CA ? GO:0001786 ... P19619 12595246
    20384 1mcx:A (2.03) BS05 CA ? GO:0001786 ... P19619 12595246
    20385 1mcx:A (2.03) BS06 CA ? GO:0001786 ... P19619 12595246
    20386 1mcx:A (2.03) BS07 CA ? GO:0001786 ... P19619 12595246
    20387 1mcx:A (2.03) BS08 CA ? GO:0001786 ... P19619 12595246
    20388 1mcy:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 7657659
    20389 1md2:D (1.45) BS01 233 ? GO:0005515 ... P01556 12405825 MOAD: Kd~40nM
    20390 1md2:E (1.45) BS01 233 ? GO:0005515 ... P01556 12405825
    20391 1md2:F (1.45) BS01 233 ? GO:0005515 ... P01556 12405825
    20392 1md3:A (2.03) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 12414796
    20393 1md3:B (2.03) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 12414796
    20394 1md4:A (2.1) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 12414796
    20395 1md4:B (2.1) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 12414796
    20396 1md9:A (2.8) BS01 AMP 6.2.1.71 GO:0005524 ... P40871 12221282
    20397 1md9:A (2.8) BS02 DBH 6.2.1.71 GO:0005524 ... P40871 12221282
    20398 1mda:A (2.5) BS01 CU ? GO:0005507 ... P22364 1599920
    20399 1mda:B (2.5) BS01 CU ? GO:0005507 ... P22364 1599920
    20400 1mdb:A (2.15) BS01 AMP 6.2.1.71 GO:0005524 ... P40871 12221282

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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