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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 761934 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1401 1am4:F (2.7) BS01 MG 3.6.5.2 GO:0000139 ... P60953 9262406
    1402 1am4:F (2.7) BS02 GNP 3.6.5.2 GO:0000139 ... P60953 9262406
    1403 1am6:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    1404 1am9:A (2.3) BS01 dna ? GO:0046983 ... P36956 9634703
    1405 1am9:A (2.3) BS02 dna ? GO:0046983 ... P36956 9634703
    1406 1am9:B (2.3) BS01 dna ? GO:0046983 ... P36956 9634703
    1407 1am9:B (2.3) BS02 dna ? GO:0046983 ... P36956 9634703
    1408 1am9:C (2.3) BS01 dna ? GO:0046983 ... P36956 9634703
    1409 1am9:C (2.3) BS02 dna ? GO:0046983 ... P36956 9634703
    1410 1am9:D (2.3) BS01 dna ? GO:0046983 ... P36956 9634703
    1411 1am9:D (2.3) BS02 dna ? GO:0046983 ... P36956 9634703
    1412 1ama:A (2.3) BS01 PLA 2.6.1.1
    2.6.1.7
    GO:0003824 ... P00508 1522585
    1413 1amf:A (1.75) BS01 MOO ? GO:0015412 ... P37329 9302996
    1414 1amh:A (2.5) BS01 CA 3.4.21.4 GO:0004252 ... P00763 10429182
    1415 1amh:B (2.5) BS01 CA 3.4.21.4 GO:0004252 ... P00763 10429182
    1416 1ami:A (2.0) BS01 SF4 4.2.1.3 GO:0003994 ... P20004 7675781
    1417 1ami:A (2.0) BS02 MIC 4.2.1.3 GO:0003994 ... P20004 7675781
    1418 1amj:A (2.0) BS01 SO4 4.2.1.3 GO:0003994 ... P20004 7675781
    1419 1amj:A (2.0) BS02 SF4 4.2.1.3 GO:0003994 ... P20004 7675781
    1420 1amk:A (1.83) BS01 PGA 5.3.1.1 GO:0004807 ... P48499 10235625 MOAD: Ki=0.05mM
    PDBbind: -logKd/Ki=4.30, Ki=50uM
    1421 1amn:A (2.8) BS01 NAF 3.1.1.7 GO:0001507 ... P04058 N/A PDBbind: -logKd/Ki=13.82, Ki=15fM
    1422 1amo:A (2.6) BS01 FAD 1.6.2.4 GO:0003420 ... P00388 9237990
    1423 1amo:A (2.6) BS02 FMN 1.6.2.4 GO:0003420 ... P00388 9237990
    1424 1amo:A (2.6) BS03 NAP 1.6.2.4 GO:0003420 ... P00388 9237990
    1425 1amo:B (2.6) BS01 FAD 1.6.2.4 GO:0003420 ... P00388 9237990
    1426 1amo:B (2.6) BS02 FMN 1.6.2.4 GO:0003420 ... P00388 9237990
    1427 1amo:B (2.6) BS03 NAP 1.6.2.4 GO:0003420 ... P00388 9237990
    1428 1amp:A (1.8) BS01 ZN 3.4.11.10 GO:0006508 ... Q01693 8087555
    1429 1amp:A (1.8) BS02 ZN 3.4.11.10 GO:0006508 ... Q01693 8087555
    1430 1amq:A (2.2) BS01 PMP 2.6.1.1 GO:0003824 ... P00509 7896726
    1431 1amr:A (2.1) BS01 PMP 2.6.1.1 GO:0003824 ... P00509 7896726
    1432 1ams:A (2.7) BS01 PMP 2.6.1.1 GO:0003824 ... P00509 7896726
    1433 1ams:A (2.7) BS02 GUA 2.6.1.1 GO:0003824 ... P00509 7896726
    1434 1amw:A (1.85) BS01 ADP ? GO:0005524 ... P02829 9230303 MOAD: Kd=29uM
    PDBbind: -logKd/Ki=4.54, Kd=29uM
    1435 1amy:A (2.8) BS01 CA 3.2.1.1 GO:0004556 ... P04063 8196040
    1436 1amy:A (2.8) BS02 CA 3.2.1.1 GO:0004556 ... P04063 8196040
    1437 1amy:A (2.8) BS03 CA 3.2.1.1 GO:0004556 ... P04063 8196040
    1438 1amz:A (1.8) BS01 NMX 2.3.3.1 GO:0004108 ... P23007 N/A
    1439 1an0:A (2.8) BS01 GDP 3.6.5.2 GO:0000139 ... P60953 N/A
    1440 1an0:B (2.8) BS01 GDP 3.6.5.2 GO:0000139 ... P60953 N/A
    1441 1an1:E (2.03) BS01 CA 3.4.21.4 GO:0004252 ... P00761 9384562
    1442 1an2:A (2.9) BS01 dna ? GO:0046983 ... P61244 8479534
    1443 1an4:A (2.9) BS01 dna ? GO:0046983 ... P22415 8306960
    1444 1an4:A (2.9) BS02 dna ? GO:0046983 ... P22415 8306960
    1445 1an4:B (2.9) BS01 dna ? GO:0046983 ... P22415 8306960
    1446 1an4:B (2.9) BS02 dna ? GO:0046983 ... P22415 8306960
    1447 1an9:A (2.5) BS01 FAD 1.4.3.3 GO:0003884 ... P00371 9399588
    1448 1an9:A (2.5) BS02 BE2 1.4.3.3 GO:0003884 ... P00371 9399588
    1449 1an9:B (2.5) BS01 FAD 1.4.3.3 GO:0003884 ... P00371 9399588
    1450 1an9:B (2.5) BS02 BE2 1.4.3.3 GO:0003884 ... P00371 9399588
    1451 1anb:A (2.8) BS01 CA 3.4.21.4 GO:0004252 ... P00763 1554694
    1452 1anc:A (2.2) BS01 CA 3.4.21.4 GO:0004252 ... P00763 1554694
    1453 1and:A (2.3) BS01 CU 3.4.21.4 GO:0004252 ... P00763 8448149
    1454 1anf:A (1.67) BS01 GLC ? GO:0005515 ... P0AEX9 9309217
    1455 1anf:A (1.67) BS02 GLC ? GO:0005515 ... P0AEX9 9309217
    1456 1ani:A (2.5) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 7473737
    1457 1ani:A (2.5) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 7473737
    1458 1ani:A (2.5) BS03 ZN 3.1.3.1 GO:0000287 ... P00634 7473737
    1459 1ani:A (2.5) BS04 PO4 3.1.3.1 GO:0000287 ... P00634 7473737
    1460 1ani:A (2.5) BS05 PO4 3.1.3.1 GO:0000287 ... P00634 7473737
    1461 1ani:A (2.5) BS06 PO4 3.1.3.1 GO:0000287 ... P00634 7473737
    1462 1ani:B (2.5) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 7473737
    1463 1ani:B (2.5) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 7473737
    1464 1ani:B (2.5) BS03 ZN 3.1.3.1 GO:0000287 ... P00634 7473737
    1465 1ani:B (2.5) BS04 PO4 3.1.3.1 GO:0000287 ... P00634 7473737
    1466 1ani:B (2.5) BS05 PO4 3.1.3.1 GO:0000287 ... P00634 7473737
    1467 1anj:A (2.3) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 7473737
    1468 1anj:A (2.3) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 7473737
    1469 1anj:A (2.3) BS03 ZN 3.1.3.1 GO:0000287 ... P00634 7473737
    1470 1anj:A (2.3) BS04 PO4 3.1.3.1 GO:0000287 ... P00634 7473737
    1471 1anj:A (2.3) BS05 PO4 3.1.3.1 GO:0000287 ... P00634 7473737
    1472 1anj:B (2.3) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 7473737
    1473 1anj:B (2.3) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 7473737
    1474 1anj:B (2.3) BS03 ZN 3.1.3.1 GO:0000287 ... P00634 7473737
    1475 1anj:B (2.3) BS04 PO4 3.1.3.1 GO:0000287 ... P00634 7473737
    1476 1anj:B (2.3) BS05 PO4 3.1.3.1 GO:0000287 ... P00634 7473737
    1477 1ank:A (2.0) BS01 AMP 2.7.4.3 GO:0000287 ... P69441 7937733
    1478 1ank:A (2.0) BS02 ANP 2.7.4.3 GO:0000287 ... P69441 7937733
    1479 1ank:B (2.0) BS01 AMP 2.7.4.3 GO:0000287 ... P69441 7937733
    1480 1ank:B (2.0) BS02 ANP 2.7.4.3 GO:0000287 ... P69441 7937733
    1481 1ann:A (2.3) BS01 CA ? GO:0001786 ... P13214 N/A
    1482 1ann:A (2.3) BS02 CA ? GO:0001786 ... P13214 N/A
    1483 1anv:A (2.7) BS01 ZN ? GO:0003677 ... P03265 15299602
    1484 1anv:A (2.7) BS02 ZN ? GO:0003677 ... P03265 15299602
    1485 1anw:A (2.4) BS01 CA ? GO:0001786 ... P08758 1446685
    1486 1anw:A (2.4) BS02 CA ? GO:0001786 ... P08758 1446685
    1487 1anw:B (2.4) BS01 CA ? GO:0001786 ... P08758 1446685
    1488 1anw:B (2.4) BS02 CA ? GO:0001786 ... P08758 1446685
    1489 1anx:A (1.9) BS01 CA ? GO:0001786 ... P08758 8254674
    1490 1anx:A (1.9) BS02 CA ? GO:0001786 ... P08758 8254674
    1491 1anx:A (1.9) BS03 CA ? GO:0001786 ... P08758 8254674
    1492 1anx:A (1.9) BS04 CA ? GO:0001786 ... P08758 8254674
    1493 1anx:B (1.9) BS01 CA ? GO:0001786 ... P08758 8254674
    1494 1anx:B (1.9) BS02 CA ? GO:0001786 ... P08758 8254674
    1495 1anx:B (1.9) BS03 CA ? GO:0001786 ... P08758 8254674
    1496 1anx:B (1.9) BS04 CA ? GO:0001786 ... P08758 8254674
    1497 1anx:C (1.9) BS01 CA ? GO:0001786 ... P08758 8254674
    1498 1anx:C (1.9) BS02 CA ? GO:0001786 ... P08758 8254674
    1499 1anx:C (1.9) BS03 CA ? GO:0001786 ... P08758 8254674
    1500 1anx:C (1.9) BS04 CA ? GO:0001786 ... P08758 8254674
    1501 1ao0:A (2.8) BS01 MG 2.4.2.14 GO:0000287 ... P00497 9271502
    1502 1ao0:A (2.8) BS02 SF4 2.4.2.14 GO:0000287 ... P00497 9271502
    1503 1ao0:A (2.8) BS03 5GP 2.4.2.14 GO:0000287 ... P00497 9271502
    1504 1ao0:A (2.8) BS04 ADP 2.4.2.14 GO:0000287 ... P00497 9271502 PDBbind: -logKd/Ki=4.96, Kd=11.0uM
    1505 1ao0:A (2.8) BS05 ADP 2.4.2.14 GO:0000287 ... P00497 9271502 PDBbind: -logKd/Ki=4.96, Kd=11.0uM
    1506 1ao0:B (2.8) BS01 ADP 2.4.2.14 GO:0000287 ... P00497 9271502 PDBbind: -logKd/Ki=4.96, Kd=11.0uM
    1507 1ao0:B (2.8) BS02 MG 2.4.2.14 GO:0000287 ... P00497 9271502
    1508 1ao0:B (2.8) BS03 SF4 2.4.2.14 GO:0000287 ... P00497 9271502
    1509 1ao0:B (2.8) BS04 5GP 2.4.2.14 GO:0000287 ... P00497 9271502
    1510 1ao0:B (2.8) BS05 ADP 2.4.2.14 GO:0000287 ... P00497 9271502 PDBbind: -logKd/Ki=4.96, Kd=11.0uM
    1511 1ao0:C (2.8) BS01 MG 2.4.2.14 GO:0000287 ... P00497 9271502
    1512 1ao0:C (2.8) BS02 SF4 2.4.2.14 GO:0000287 ... P00497 9271502
    1513 1ao0:C (2.8) BS03 5GP 2.4.2.14 GO:0000287 ... P00497 9271502
    1514 1ao0:C (2.8) BS04 ADP 2.4.2.14 GO:0000287 ... P00497 9271502
    1515 1ao0:C (2.8) BS05 ADP 2.4.2.14 GO:0000287 ... P00497 9271502
    1516 1ao0:D (2.8) BS01 ADP 2.4.2.14 GO:0000287 ... P00497 9271502
    1517 1ao0:D (2.8) BS02 MG 2.4.2.14 GO:0000287 ... P00497 9271502
    1518 1ao0:D (2.8) BS03 SF4 2.4.2.14 GO:0000287 ... P00497 9271502
    1519 1ao0:D (2.8) BS04 5GP 2.4.2.14 GO:0000287 ... P00497 9271502
    1520 1ao0:D (2.8) BS05 ADP 2.4.2.14 GO:0000287 ... P00497 9271502
    1521 1ao7:D (2.6) BS01 peptide ? GO:0002250 ... A0A075B6T6
    P01848
    8906788
    1522 1ao8:A (-1.00) BS01 MTX 1.5.1.3 GO:0004146 ... P00381 9514736 PDBbind: -logKd/Ki=8.22, IC50=6nM
    BindingDB: IC50=16nM, Ki=0.004000nM
    1523 1aob:A (2.1) BS01 DDU 2.1.1.45 GO:0000287 ... P0A884 9687366
    1524 1aod:A (2.6) BS01 INS 4.6.1.13 GO:0004436 ... P34024 9367761
    1525 1aoe:A (1.6) BS01 NDP 1.5.1.3 GO:0004146 ... P22906 9374515
    1526 1aoe:A (1.6) BS02 GW3 1.5.1.3 GO:0004146 ... P22906 9374515 MOAD: Ki=0.22nM
    BindingDB: IC50=4nM, Ki=0.22nM
    1527 1aoe:B (1.6) BS01 NDP 1.5.1.3 GO:0004146 ... P22906 9374515
    1528 1aoe:B (1.6) BS02 GW3 1.5.1.3 GO:0004146 ... P22906 9374515 MOAD: Ki=0.22nM
    BindingDB: IC50=4nM, Ki=0.22nM
    1529 1aof:A (2.0) BS01 HEM 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 9311786
    1530 1aof:A (2.0) BS02 DHE 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 9311786
    1531 1aof:B (2.0) BS01 HEM 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 9311786
    1532 1aof:B (2.0) BS02 DHE 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 9311786
    1533 1aog:A (2.3) BS01 FAD 1.8.1.12 GO:0004362 ... P28593 8771196
    1534 1aog:B (2.3) BS01 FAD 1.8.1.12 GO:0004362 ... P28593 8771196
    1535 1aoi:A (2.8) BS01 dna ? GO:0000786 ... P02302 9305837
    1536 1aoi:A (2.8) BS02 dna ? GO:0000786 ... P02302 9305837
    1537 1aoi:B (2.8) BS01 dna ? GO:0003677 ... P62799 9305837
    1538 1aoi:B (2.8) BS02 dna ? GO:0003677 ... P62799 9305837
    1539 1aoi:C (2.8) BS01 dna ? GO:0000786 ... P06897 9305837
    1540 1aoi:C (2.8) BS02 dna ? GO:0000786 ... P06897 9305837
    1541 1aoi:D (2.8) BS01 dna ? GO:0000786 ... P02281 9305837
    1542 1aoi:D (2.8) BS02 dna ? GO:0000786 ... P02281 9305837
    1543 1aoi:E (2.8) BS01 dna ? GO:0000786 ... P02302 9305837
    1544 1aoi:E (2.8) BS02 dna ? GO:0000786 ... P02302 9305837
    1545 1aoi:F (2.8) BS01 dna ? GO:0003677 ... P62799 9305837
    1546 1aoi:F (2.8) BS02 dna ? GO:0003677 ... P62799 9305837
    1547 1aoi:G (2.8) BS01 dna ? GO:0000786 ... P06897 9305837
    1548 1aoi:G (2.8) BS02 dna ? GO:0000786 ... P06897 9305837
    1549 1aoi:H (2.8) BS01 dna ? GO:0000786 ... P02281 9305837
    1550 1aoi:H (2.8) BS02 dna ? GO:0000786 ... P02281 9305837
    1551 1aom:A (1.8) BS01 DHE 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 9311786
    1552 1aom:B (1.8) BS01 HEM 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 9311786
    1553 1aom:B (1.8) BS02 DHE 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 9311786
    1554 1aom:B (1.8) BS03 NO 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 9311786
    1555 1aon:A (3.0) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 9285585
    1556 1aon:B (3.0) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 9285585
    1557 1aon:C (3.0) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 9285585
    1558 1aon:D (3.0) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 9285585
    1559 1aon:E (3.0) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 9285585
    1560 1aon:F (3.0) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 9285585
    1561 1aon:G (3.0) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 9285585
    1562 1aoo:A (-1.00) BS01 AG N/A GO:0005507 ... N/A 8566237
    1563 1aoo:A (-1.00) BS02 AG N/A GO:0005507 ... N/A 8566237
    1564 1aoo:A (-1.00) BS03 AG N/A GO:0005507 ... N/A 8566237
    1565 1aoo:A (-1.00) BS04 AG N/A GO:0005507 ... N/A 8566237
    1566 1aoo:A (-1.00) BS05 AG N/A GO:0005507 ... N/A 8566237
    1567 1aoo:A (-1.00) BS06 AG N/A GO:0005507 ... N/A 8566237
    1568 1aoo:A (-1.00) BS07 AG N/A GO:0005507 ... N/A 8566237
    1569 1aop:A (1.6) BS01 PO4 1.8.1.2 GO:0004783 ... P17846 7569952
    1570 1aop:A (1.6) BS02 SF4 1.8.1.2 GO:0004783 ... P17846 7569952
    1571 1aop:A (1.6) BS03 SRM 1.8.1.2 GO:0004783 ... P17846 7569952
    1572 1aoq:A (1.8) BS01 HEM 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 9311786
    1573 1aoq:A (1.8) BS02 DHE 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 9311786
    1574 1aoq:B (1.8) BS01 HEM 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 9311786
    1575 1aoq:B (1.8) BS02 DHE 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 9311786
    1576 1aor:A (2.3) BS01 FE 1.2.7.5 GO:0009055 ... Q51739 7878465
    1577 1aor:A (2.3) BS02 SF4 1.2.7.5 GO:0009055 ... Q51739 7878465
    1578 1aor:A (2.3) BS03 PTE 1.2.7.5 GO:0009055 ... Q51739 7878465
    1579 1aor:B (2.3) BS01 FE 1.2.7.5 GO:0009055 ... Q51739 7878465
    1580 1aor:B (2.3) BS02 SF4 1.2.7.5 GO:0009055 ... Q51739 7878465
    1581 1aor:B (2.3) BS03 PTE 1.2.7.5 GO:0009055 ... Q51739 7878465
    1582 1aoz:A (1.9) BS01 CU 1.10.3.3 GO:0005507 ... P37064 1548698
    1583 1aoz:B (1.9) BS01 CU 1.10.3.3 GO:0005507 ... P37064 1548698
    1584 1ap4:A (-1.00) BS01 CA ? GO:0005509 ... P63316 9315850
    1585 1ap5:A (2.2) BS01 MN 1.15.1.1 GO:0004784 ... P04179 9537987
    1586 1ap5:B (2.2) BS01 MN 1.15.1.1 GO:0004784 ... P04179 9537987
    1587 1ap6:A (1.9) BS01 MN 1.15.1.1 GO:0004784 ... P04179 9537987
    1588 1ap6:B (1.9) BS01 MN 1.15.1.1 GO:0004784 ... P04179 9537987
    1589 1ap8:A (-1.00) BS01 M7G ? GO:0000184 ... P07260 9302999
    1590 1ap9:A (2.35) BS01 RET ? GO:0005216 ... P02945 9287223
    1591 1apb:A (1.76) BS01 FCA ? GO:0015407 ... P02924 2204627 MOAD: Kd=1.51uM
    1592 1apb:A (1.76) BS02 FCB ? GO:0015407 ... P02924 2204627 MOAD: Kd=1.51uM
    PDBbind: -logKd/Ki=5.82, Kd=1.51uM
    1593 1aph:B (2.0) BS01 peptide ? GO:0005179 ... P01317 1477273
    1594 1aph:B (2.0) BS02 DCE ? GO:0005179 ... P01317 1477273
    1595 1apl:C (2.7) BS01 dna ? GO:0003677 ... P0CY08 1682054
    1596 1apl:C (2.7) BS02 dna ? GO:0003677 ... P0CY08 1682054
    1597 1apl:D (2.7) BS01 dna ? GO:0003677 ... P0CY08 1682054
    1598 1apl:D (2.7) BS02 dna ? GO:0003677 ... P0CY08 1682054
    1599 1apm:E (2.0) BS01 peptide 2.7.11.11 GO:0000122 ... P05132 15299526
    1600 1apt:E (1.8) BS01 peptide 3.4.23.20 GO:0004190 ... P00798 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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