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BioLiP
Download all results in tab-seperated text for 761934 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    761601 9fgq:E (2.5) BS01 dna N/A GO:0000786 ... P68431 39143240
    761602 9fgq:E (2.5) BS02 dna N/A GO:0000786 ... P68431 39143240
    761603 9fgq:F (2.5) BS01 dna N/A GO:0000781 ... P62805 39143240
    761604 9fgq:F (2.5) BS02 dna N/A GO:0000781 ... P62805 39143240
    761605 9fgq:G (2.5) BS01 peptide N/A GO:0000786 ... Q6FI13 39143240
    761606 9fgq:G (2.5) BS02 dna N/A GO:0000786 ... Q6FI13 39143240
    761607 9fgq:G (2.5) BS03 dna N/A GO:0000786 ... Q6FI13 39143240
    761608 9fgq:H (2.5) BS01 peptide N/A GO:0000781 ... P33778 39143240
    761609 9fgq:H (2.5) BS02 dna N/A GO:0000781 ... P33778 39143240
    761610 9fgq:H (2.5) BS03 dna N/A GO:0000781 ... P33778 39143240
    761611 9fh9:A (2.5) BS01 dna N/A GO:0000786 ... P68431 39143240
    761612 9fh9:A (2.5) BS02 dna N/A GO:0000786 ... P68431 39143240
    761613 9fh9:B (2.5) BS01 dna N/A GO:0000781 ... P62805 39143240
    761614 9fh9:B (2.5) BS02 dna N/A GO:0000781 ... P62805 39143240
    761615 9fh9:C (2.5) BS01 peptide N/A GO:0000786 ... Q7L7L0 39143240
    761616 9fh9:C (2.5) BS02 dna N/A GO:0000786 ... Q7L7L0 39143240
    761617 9fh9:C (2.5) BS03 dna N/A GO:0000786 ... Q7L7L0 39143240
    761618 9fh9:D (2.5) BS01 peptide N/A GO:0000786 ... P02281 39143240
    761619 9fh9:D (2.5) BS02 dna N/A GO:0000786 ... P02281 39143240
    761620 9fh9:D (2.5) BS03 dna N/A GO:0000786 ... P02281 39143240
    761621 9fh9:E (2.5) BS01 dna N/A GO:0000786 ... P68431 39143240
    761622 9fh9:E (2.5) BS02 dna N/A GO:0000786 ... P68431 39143240
    761623 9fh9:F (2.5) BS01 dna N/A GO:0000781 ... P62805 39143240
    761624 9fh9:F (2.5) BS02 dna N/A GO:0000781 ... P62805 39143240
    761625 9fh9:G (2.5) BS01 peptide N/A GO:0000786 ... Q7L7L0 39143240
    761626 9fh9:G (2.5) BS02 dna N/A GO:0000786 ... Q7L7L0 39143240
    761627 9fh9:G (2.5) BS03 dna N/A GO:0000786 ... Q7L7L0 39143240
    761628 9fh9:H (2.5) BS01 peptide N/A GO:0000786 ... P02281 39143240
    761629 9fh9:H (2.5) BS02 dna N/A GO:0000786 ... P02281 39143240
    761630 9fh9:H (2.5) BS03 dna N/A GO:0000786 ... P02281 39143240
    761631 9fif:A (1.77) BS01 FES N/A GO:0003954 ... O66842 38960077
    761632 9fif:B (1.77) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    761633 9fif:B (1.77) BS02 FMN N/A GO:0046872 ... O66841 38960077
    761634 9fif:B (1.77) BS03 NAI N/A GO:0046872 ... O66841 38960077
    761635 9fif:C (1.77) BS01 FES N/A GO:0003954 ... O66842 38960077
    761636 9fif:D (1.77) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    761637 9fif:D (1.77) BS02 FMN N/A GO:0046872 ... O66841 38960077
    761638 9fih:A (2.08) BS01 FES N/A GO:0003954 ... O66842 38960077
    761639 9fih:B (2.08) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    761640 9fih:B (2.08) BS02 FNR N/A GO:0046872 ... O66841 38960077
    761641 9fih:B (2.08) BS03 NAI N/A GO:0046872 ... O66841 38960077
    761642 9fih:C (2.08) BS01 FES N/A GO:0003954 ... O66842 38960077
    761643 9fih:D (2.08) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    761644 9fih:D (2.08) BS02 FNR N/A GO:0046872 ... O66841 38960077
    761645 9fih:D (2.08) BS03 NAI N/A GO:0046872 ... O66841 38960077
    761646 9fii:A (2.5) BS01 FES N/A GO:0003954 ... O66842 38960077
    761647 9fii:B (2.5) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    761648 9fii:B (2.5) BS02 FMN N/A GO:0046872 ... O66841 38960077
    761649 9fii:C (2.5) BS01 FES N/A GO:0003954 ... O66842 38960077
    761650 9fii:D (2.5) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    761651 9fii:D (2.5) BS02 FMN N/A GO:0046872 ... O66841 38960077
    761652 9fij:A (2.35) BS01 FES N/A GO:0003954 ... O66842 38960077
    761653 9fij:B (2.35) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    761654 9fij:B (2.35) BS02 FNR N/A GO:0046872 ... O66841 38960077
    761655 9fij:C (2.35) BS01 FES N/A GO:0003954 ... O66842 38960077
    761656 9fij:D (2.35) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    761657 9fij:D (2.35) BS02 FNR N/A GO:0046872 ... O66841 38960077
    761658 9fil:A (2.54) BS01 FES N/A GO:0003954 ... O66842 38960077
    761659 9fil:B (2.54) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    761660 9fil:B (2.54) BS02 FNR N/A GO:0046872 ... O66841 38960077
    761661 9fil:B (2.54) BS03 NAD N/A GO:0046872 ... O66841 38960077
    761662 9fil:C (2.54) BS01 FES N/A GO:0003954 ... O66842 38960077
    761663 9fil:D (2.54) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    761664 9fil:D (2.54) BS02 FNR N/A GO:0046872 ... O66841 38960077
    761665 9fil:D (2.54) BS03 NAD N/A GO:0046872 ... O66841 38960077
    761666 9fmd:1 (3.3) BS01 rna N/A GO:0003014 ... Q9H875 38925148
    761667 9fmd:1 (3.3) BS02 rna N/A GO:0003014 ... Q9H875 38925148
    761668 9fmd:32 (3.3) BS01 rna N/A GO:0003723 ... Q9Y421 38925148
    761669 9fmd:7 (3.3) BS01 ATP N/A GO:0000184 ... P38919 38925148
    761670 9fmd:A (3.3) BS01 rna N/A GO:0000244 ... Q6P2Q9 38925148
    761671 9fmd:A (3.3) BS02 rna N/A GO:0000244 ... Q6P2Q9 38925148
    761672 9fmd:A (3.3) BS03 rna N/A GO:0000244 ... Q6P2Q9 38925148
    761673 9fmd:A (3.3) BS04 rna N/A GO:0000244 ... Q6P2Q9 38925148
    761674 9fmd:A (3.3) BS05 rna N/A GO:0000244 ... Q6P2Q9 38925148
    761675 9fmd:A (3.3) BS06 IHP N/A GO:0000244 ... Q6P2Q9 38925148
    761676 9fmd:C (3.3) BS01 rna N/A GO:0000398 ... Q15029 38925148
    761677 9fmd:C (3.3) BS02 GTP N/A GO:0000398 ... Q15029 38925148
    761678 9fmd:E (3.3) BS01 rna N/A GO:0000375 ... Q96DI7 38925148
    761679 9fmd:L (3.3) BS01 rna N/A GO:0000077 ... Q99459 38925148
    761680 9fmd:L (3.3) BS02 rna N/A GO:0000077 ... Q99459 38925148
    761681 9fmd:L (3.3) BS03 rna N/A GO:0000077 ... Q99459 38925148
    761682 9fmd:M (3.3) BS01 rna N/A GO:0000398 ... O95926 38925148
    761683 9fmd:M (3.3) BS02 rna N/A GO:0000398 ... O95926 38925148
    761684 9fmd:N (3.3) BS01 rna N/A GO:0000398 ... P41223 38925148
    761685 9fmd:N (3.3) BS02 rna N/A GO:0000398 ... P41223 38925148
    761686 9fmd:N (3.3) BS03 ZN N/A GO:0000398 ... P41223 38925148
    761687 9fmd:N (3.3) BS04 ZN N/A GO:0000398 ... P41223 38925148
    761688 9fmd:N (3.3) BS05 ZN N/A GO:0000398 ... P41223 38925148
    761689 9fmd:O (3.3) BS01 rna N/A GO:0000398 ... Q9NW64 38925148
    761690 9fmd:O (3.3) BS02 rna N/A GO:0000398 ... Q9NW64 38925148
    761691 9fmd:O (3.3) BS03 ZN N/A GO:0000398 ... Q9NW64 38925148
    761692 9fmd:O (3.3) BS04 ZN N/A GO:0000398 ... Q9NW64 38925148
    761693 9fmd:O (3.3) BS05 ZN N/A GO:0000398 ... Q9NW64 38925148
    761694 9fmd:P (3.3) BS01 rna N/A GO:0000398 ... Q9P013 38925148
    761695 9fmd:P (3.3) BS02 rna N/A GO:0000398 ... Q9P013 38925148
    761696 9fmd:P (3.3) BS03 rna N/A GO:0000398 ... Q9P013 38925148
    761697 9fmd:R (3.3) BS01 rna N/A GO:0000122 ... Q13573 38925148
    761698 9fmd:R (3.3) BS02 rna N/A GO:0000122 ... Q13573 38925148
    761699 9fmd:SR (3.3) BS01 rna N/A GO:0000398 ... Q9UQ35 38925148
    761700 9fmd:SR (3.3) BS02 rna N/A GO:0000398 ... Q9UQ35 38925148
    761701 9fmd:T (3.3) BS01 rna N/A GO:0000398 ... O43660 38925148
    761702 9fmd:U (3.3) BS01 IHP N/A GO:0000375 ... O95391 38925148
    761703 9fmd:W (3.3) BS01 rna N/A GO:0000398 ... O60508 38925148
    761704 9fmd:W (3.3) BS02 rna N/A GO:0000398 ... O60508 38925148
    761705 9fmd:a (3.3) BS01 rna N/A GO:0000243 ... P62318 38925148
    761706 9fmd:b (3.3) BS01 rna N/A GO:0000387 ... P14678 38925148
    761707 9fmd:c (3.3) BS01 rna N/A GO:0000243 ... P62314 38925148
    761708 9fmd:d (3.3) BS01 rna N/A GO:0000245 ... P62316 38925148
    761709 9fmd:e (3.3) BS01 rna N/A GO:0000245 ... P62304 38925148
    761710 9fmd:f (3.3) BS01 rna N/A GO:0000387 ... P62306 38925148
    761711 9fmd:g (3.3) BS01 rna N/A GO:0000245 ... P62308 38925148
    761712 9fmd:h (3.3) BS01 rna N/A GO:0000243 ... P62318 38925148
    761713 9fmd:i (3.3) BS01 rna N/A GO:0000387 ... P14678 38925148
    761714 9fmd:j (3.3) BS01 rna N/A GO:0000243 ... P62314 38925148
    761715 9fmd:k (3.3) BS01 rna N/A GO:0000245 ... P62316 38925148
    761716 9fmd:l (3.3) BS01 rna N/A GO:0000245 ... P62304 38925148
    761717 9fmd:m (3.3) BS01 rna N/A GO:0000387 ... P62306 38925148
    761718 9fmd:n (3.3) BS01 rna N/A GO:0000245 ... P62308 38925148
    761719 9fmd:o (3.3) BS01 rna N/A GO:0000398 ... P09661 38925148
    761720 9fmd:p (3.3) BS01 rna N/A GO:0000398 ... P08579 38925148
    761721 9fmm:A (2.5) BS01 A1IDX N/A GO:0001618 ... Q9BYF1 39066808
    761722 9fmm:A (2.5) BS02 ZN N/A GO:0001618 ... Q9BYF1 39066808
    761723 9fmm:B (2.5) BS01 A1IDX N/A GO:0001618 ... Q9BYF1 39066808
    761724 9fmm:B (2.5) BS02 ZN N/A GO:0001618 ... Q9BYF1 39066808
    761725 9fpz:A (2.69) BS01 rna N/A GO:0003723 ... P50579 N/A
    761726 9fpz:A (2.69) BS02 CO N/A GO:0003723 ... P50579 N/A
    761727 9fpz:A (2.69) BS03 CO N/A GO:0003723 ... P50579 N/A
    761728 9fpz:B (2.69) BS01 rna N/A GO:0001525 ... Q9BXJ9 N/A
    761729 9fpz:B (2.69) BS02 IHP N/A GO:0001525 ... Q9BXJ9 N/A
    761730 9fpz:LC (2.69) BS01 rna N/A GO:0002181 ... P36578 N/A
    761731 9fpz:LE (2.69) BS01 rna N/A GO:0000027 ... Q02878 N/A
    761732 9fpz:LR (2.69) BS01 rna N/A GO:0002181 ... P84098 N/A
    761733 9fpz:LX (2.69) BS01 rna N/A GO:0000027 ... P62750 N/A
    761734 9fpz:LX (2.69) BS02 rna N/A GO:0000027 ... P62750 N/A
    761735 9fpz:LY (2.69) BS01 rna N/A GO:0002181 ... P61254 N/A
    761736 9fpz:LY (2.69) BS02 rna N/A GO:0002181 ... P61254 N/A
    761737 9fpz:Lh (2.69) BS01 rna N/A GO:0000463 ... P42766 N/A
    761738 9fpz:Lk (2.69) BS01 rna N/A GO:0001501 ... P63173 N/A
    761739 9fpz:Lr (2.69) BS01 rna N/A GO:0002181 ... P46779 N/A
    761740 9fq0:D (4.67) BS01 rna N/A GO:0001701 ... P20290 N/A
    761741 9fq0:LC (4.67) BS01 rna N/A GO:0002181 ... P36578 N/A
    761742 9fq0:LE (4.67) BS01 rna N/A GO:0000027 ... Q02878 N/A
    761743 9fq0:LR (4.67) BS01 rna N/A GO:0002181 ... P84098 N/A
    761744 9fq0:LU (4.67) BS01 rna N/A GO:0002181 ... P35268 N/A
    761745 9fq0:LX (4.67) BS01 rna N/A GO:0000027 ... P62750 N/A
    761746 9fq0:LX (4.67) BS02 rna N/A GO:0000027 ... P62750 N/A
    761747 9fq0:Lh (4.67) BS01 rna N/A GO:0000463 ... P42766 N/A
    761748 9fq0:Lk (4.67) BS01 rna N/A GO:0001501 ... P63173 N/A
    761749 9fq0:Lr (4.67) BS01 rna N/A GO:0002181 ... P46779 N/A
    761750 9fst:G (2.75) BS01 MG N/A GO:0000502 ... P21243 N/A
    761751 9fst:I (2.75) BS01 MG N/A GO:0000502 ... P25451 N/A
    761752 9fst:W (2.75) BS01 MG N/A GO:0000502 ... P25451 N/A
    761753 9fst:Z (2.75) BS01 MG N/A GO:0000502 ... P23724 N/A
    761754 9fsv:G (2.75) BS01 MG N/A GO:0000502 ... P21243 N/A
    761755 9fsv:I (2.75) BS01 MG N/A GO:0000502 ... P25451 N/A
    761756 9fsv:N (2.75) BS01 MG N/A GO:0000502 ... P38624 N/A
    761757 9fsv:W (2.75) BS01 MG N/A GO:0000502 ... P25451 N/A
    761758 9fsv:Z (2.75) BS01 MG N/A GO:0000502 ... P23724 N/A
    761759 9ft0:G (2.75) BS01 MG N/A GO:0000502 ... P21243 N/A
    761760 9ft0:I (2.75) BS01 MG N/A GO:0000502 ... P25451 N/A
    761761 9ft0:N (2.75) BS01 MG N/A GO:0000502 ... P38624 N/A
    761762 9ft1:G (2.6) BS01 MG N/A GO:0000502 ... P21243 N/A
    761763 9ft1:I (2.6) BS01 A1IFK N/A GO:0000502 ... P25451 N/A
    761764 9ft1:L (2.6) BS01 A1IFK N/A GO:0000502 ... P23724 N/A
    761765 9ft1:W (2.6) BS01 A1IFK N/A GO:0000502 ... P25451 N/A
    761766 9ft1:Z (2.6) BS01 A1IFK N/A GO:0000502 ... P23724 N/A
    761767 9fwg:A (3.2) BS01 A1IG2 N/A GO:0000122 ... O60341 38619005
    761768 9fyb:A (1.84) BS01 NMN N/A GO:0004515 ... A0A133MWI0 N/A
    761769 9fyb:B (1.84) BS01 NMN N/A GO:0004515 ... A0A133MWI0 N/A
    761770 9g0k:A (2.0) BS01 SAH N/A GO:0008168 ... A0A1W6R556 39121999
    761771 9g0k:B (2.0) BS01 SAH N/A GO:0008168 ... A0A1W6R556 39121999
    761772 9gac:A (1.9) BS01 GLY 3.5.1.26 GO:0003948 ... Q47898 10490104
    761773 9gac:C (1.9) BS01 GLY 3.5.1.26 GO:0003948 ... Q47898 10490104
    761774 9gaf:A (1.9) BS01 GLY 3.5.1.26 GO:0003948 ... Q47898 10490104
    761775 9gaf:C (1.9) BS01 GLY 3.5.1.26 GO:0003948 ... Q47898 10490104
    761776 9gpb:A (2.9) BS01 PLP 2.4.1.1 GO:0000166 ... P00489 2770867
    761777 9gpb:B (2.9) BS01 PLP 2.4.1.1 GO:0000166 ... P00489 2770867
    761778 9gpb:C (2.9) BS01 PLP 2.4.1.1 GO:0000166 ... P00489 2770867
    761779 9gpb:D (2.9) BS01 PLP 2.4.1.1 GO:0000166 ... P00489 2770867
    761780 9gss:A (1.97) BS01 GTX 2.5.1.18 GO:0000302 ... P09211 9398518
    761781 9gss:B (1.97) BS01 GTX 2.5.1.18 GO:0000302 ... P09211 9398518
    761782 9hvp:A (2.8) BS01 0E9 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P12497 2200122 PDBbind: -logKd/Ki=8.35, Ki=4.5nM
    761783 9hvp:B (2.8) BS01 0E9 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P12497 2200122 PDBbind: -logKd/Ki=8.35, Ki=4.5nM
    761784 9ica:A (3.0) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    761785 9ica:A (3.0) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    761786 9ica:A (3.0) BS03 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    761787 9ica:A (3.0) BS04 STP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    761788 9icb:A (3.2) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    761789 9icb:A (3.2) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    761790 9icb:A (3.2) BS03 CO 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    761791 9icb:A (3.2) BS04 DTP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    761792 9icc:A (3.1) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    761793 9icc:A (3.1) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    761794 9icc:A (3.1) BS03 DTP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    761795 9icd:A (2.5) BS01 NAP 1.1.1.42 GO:0000287 ... P08200 1888729 MOAD: Kd=125uM
    PDBbind: -logKd/Ki=3.90, Kd=125uM
    761796 9ice:A (3.3) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    761797 9ice:A (3.3) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    761798 9icf:A (3.0) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    761799 9icf:A (3.0) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    761800 9icf:A (3.0) BS03 ZN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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