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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 761934 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    760601 9b5m:A (2.79) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    760602 9b5m:A (2.79) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    760603 9b5m:C (2.79) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    760604 9b5n:A (3.12) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    760605 9b5n:A (3.12) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    760606 9b5n:C (3.12) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    760607 9b5o:A (3.19) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    760608 9b5o:A (3.19) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    760609 9b5o:C (3.19) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    760610 9b5p:A (3.08) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    760611 9b5p:A (3.08) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    760612 9b5p:C (3.08) BS01 peptide 2.3.2.23 GO:0000151 ... P46595 39143218
    760613 9b5p:C (3.08) BS02 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    760614 9b5q:A (2.95) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    760615 9b5q:A (2.95) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    760616 9b5q:C (2.95) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    760617 9b5r:A (2.95) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    760618 9b5r:A (2.95) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    760619 9b5r:C (2.95) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    760620 9b5s:A (2.96) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    760621 9b5s:A (2.96) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    760622 9b5t:A (3.16) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    760623 9b5t:A (3.16) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    760624 9b5u:A (3.67) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    760625 9b5v:A (3.94) BS01 MG 6.2.1.45 GO:0000287 ... O94609 39143218
    760626 9b5v:A (3.94) BS02 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    760627 9b5v:C (3.94) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    760628 9b5w:A (3.96) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    760629 9b5w:A (3.96) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    760630 9b5w:C (3.96) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    760631 9b5x:A (4.16) BS01 MG 6.2.1.45 GO:0000287 ... O94609 39143218
    760632 9b5x:A (4.16) BS02 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    760633 9b5x:A (4.16) BS03 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    760634 9b5x:C (4.16) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    760635 9b70:A (2.88) BS01 A1AI1 N/A GO:0005886 ... O66465 38877016
    760636 9b70:B (2.88) BS01 A1AI1 N/A GO:0005886 ... O66465 38877016
    760637 9b71:A (2.7) BS01 A1AI2 N/A GO:0005886 ... O66465 38877016
    760638 9b71:B (2.7) BS01 A1AI2 N/A GO:0005886 ... O66465 38877016
    760639 9b8o:a (3.2) BS01 MAN N/A GO:0000220 ... P25286 38900912
    760640 9b8o:a (3.2) BS02 GLC N/A GO:0000220 ... P25286 38900912
    760641 9b8o:a (3.2) BS03 WJP N/A GO:0000220 ... P25286 38900912
    760642 9b8o:a (3.2) BS04 LP3 N/A GO:0000220 ... P25286 38900912
    760643 9b8o:h (3.2) BS01 CLR N/A GO:0000220 ... P63081 38900912
    760644 9b8o:i (3.2) BS01 CLR N/A GO:0000220 ... P63081 38900912
    760645 9b8o:i (3.2) BS02 CLR N/A GO:0000220 ... P63081 38900912
    760646 9b8o:i (3.2) BS03 CLR N/A GO:0000220 ... P63081 38900912
    760647 9b8o:j (3.2) BS01 CLR N/A GO:0000220 ... P63081 38900912
    760648 9b8o:j (3.2) BS02 CLR N/A GO:0000220 ... P63081 38900912
    760649 9b8o:j (3.2) BS03 CLR N/A GO:0000220 ... P63081 38900912
    760650 9b8o:j (3.2) BS04 CLR N/A GO:0000220 ... P63081 38900912
    760651 9b8o:k (3.2) BS01 CLR N/A GO:0000220 ... P63081 38900912
    760652 9b8o:k (3.2) BS02 CLR N/A GO:0000220 ... P63081 38900912
    760653 9b8o:k (3.2) BS03 CLR N/A GO:0000220 ... P63081 38900912
    760654 9b8o:l (3.2) BS01 CLR N/A GO:0000220 ... P63081 38900912
    760655 9b8o:l (3.2) BS02 CLR N/A GO:0000220 ... P63081 38900912
    760656 9b8o:l (3.2) BS03 CLR N/A GO:0000220 ... P63081 38900912
    760657 9b8o:m (3.2) BS01 CLR N/A GO:0000220 ... P63081 38900912
    760658 9b8o:m (3.2) BS02 CLR N/A GO:0000220 ... P63081 38900912
    760659 9b8o:m (3.2) BS03 CLR N/A GO:0000220 ... P63081 38900912
    760660 9b8o:n (3.2) BS01 CLR N/A GO:0000220 ... P63081 38900912
    760661 9b8o:n (3.2) BS02 CLR N/A GO:0000220 ... P63081 38900912
    760662 9b8o:n (3.2) BS03 CLR N/A GO:0000220 ... P63081 38900912
    760663 9b8o:n (3.2) BS04 CLR N/A GO:0000220 ... P63081 38900912
    760664 9b8o:n (3.2) BS05 CLR N/A GO:0000220 ... P63081 38900912
    760665 9b8o:o (3.2) BS01 CLR N/A GO:0000220 ... P63081 38900912
    760666 9b8o:o (3.2) BS02 CLR N/A GO:0000220 ... P63081 38900912
    760667 9b8o:o (3.2) BS03 CLR N/A GO:0000220 ... P63081 38900912
    760668 9b8p:A (3.2) BS01 ADP N/A GO:0000221 ... D4A133 38900912
    760669 9b8p:D (3.2) BS01 ADP N/A GO:0000221 ... P62815 38900912
    760670 9b8w:A (3.1) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    760671 9b8w:A (3.1) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    760672 9b8w:B (3.1) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    760673 9b8w:B (3.1) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    760674 9b8w:C (3.1) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    760675 9b8w:C (3.1) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    760676 9b8w:D (3.1) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    760677 9b8w:D (3.1) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    760678 9b8x:A (3.0) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    760679 9b8x:A (3.0) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    760680 9b8y:A (3.2) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    760681 9b8y:A (3.2) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    760682 9b8y:A (3.2) BS03 DVT ? GO:0002250 ... Q8TD43 38750366
    760683 9b8y:B (3.2) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    760684 9b8y:B (3.2) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    760685 9b8y:B (3.2) BS03 DVT ? GO:0002250 ... Q8TD43 38750366
    760686 9b8y:C (3.2) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    760687 9b8y:C (3.2) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    760688 9b8y:C (3.2) BS03 DVT ? GO:0002250 ... Q8TD43 38750366
    760689 9b8y:D (3.2) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    760690 9b8y:D (3.2) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    760691 9b8y:D (3.2) BS03 DVT ? GO:0002250 ... Q8TD43 38750366
    760692 9b8z:A (3.4) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    760693 9b8z:A (3.4) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    760694 9b8z:A (3.4) BS03 DVT ? GO:0002250 ... Q8TD43 38750366
    760695 9b90:A (3.4) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    760696 9b90:A (3.4) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    760697 9b90:A (3.4) BS03 ATP ? GO:0002250 ... Q8TD43 38750366
    760698 9b90:B (3.4) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    760699 9b90:B (3.4) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    760700 9b90:B (3.4) BS03 ATP ? GO:0002250 ... Q8TD43 38750366
    760701 9b90:C (3.4) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    760702 9b90:C (3.4) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    760703 9b90:C (3.4) BS03 ATP ? GO:0002250 ... Q8TD43 38750366
    760704 9b90:D (3.4) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    760705 9b90:D (3.4) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    760706 9b90:D (3.4) BS03 ATP ? GO:0002250 ... Q8TD43 38750366
    760707 9b91:A (3.3) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    760708 9b91:A (3.3) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    760709 9b91:A (3.3) BS03 ATP ? GO:0002250 ... Q8TD43 38750366
    760710 9b92:A (3.5) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    760711 9b92:B (3.5) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    760712 9b92:C (3.5) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    760713 9b92:D (3.5) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    760714 9b94:A (3.1) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    760715 9b94:B (3.1) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    760716 9b94:C (3.1) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    760717 9b94:D (3.1) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    760718 9b9m:A (2.07) BS01 FE2 N/A GO:0016491 ... A0A0C7AN42 39220707
    760719 9b9m:B (2.07) BS01 FE2 N/A GO:0016491 ... A0A0C7AN42 39220707
    760720 9b9m:C (2.07) BS01 FE2 N/A GO:0016491 ... A0A0C7AN42 39220707
    760721 9b9m:D (2.07) BS01 FE2 N/A GO:0016491 ... A0A0C7AN42 39220707
    760722 9b9n:A (2.28) BS01 A1AL2 N/A GO:0016491 ... A0A0C7AN42 39220707
    760723 9b9n:A (2.28) BS02 FE N/A GO:0016491 ... A0A0C7AN42 39220707
    760724 9b9n:B (2.28) BS01 A1AL2 N/A GO:0016491 ... A0A0C7AN42 39220707
    760725 9b9n:B (2.28) BS02 FE N/A GO:0016491 ... A0A0C7AN42 39220707
    760726 9b9o:A (2.16) BS01 FE2 N/A GO:0016491 ... A0A0C7AN42 39220707
    760727 9b9o:A (2.16) BS02 A1AL2 N/A GO:0016491 ... A0A0C7AN42 39220707
    760728 9b9o:B (2.16) BS01 FE2 N/A GO:0016491 ... A0A0C7AN42 39220707
    760729 9b9o:B (2.16) BS02 A1AL2 N/A GO:0016491 ... A0A0C7AN42 39220707
    760730 9bap:A (2.88) BS01 SAH N/A GO:0003677 ... Q96W73 N/A
    760731 9bap:A (2.88) BS02 ZN N/A GO:0003677 ... Q96W73 N/A
    760732 9bbb:A (2.5) BS01 HEM N/A GO:0002933 ... P08684 N/A
    760733 9bbb:A (2.5) BS02 A1APA N/A GO:0002933 ... P08684 N/A
    760734 9bbe:A (2.0) BS01 A1AK9 ? GO:0000781 ... Q16531 N/A
    760735 9bbg:A (1.7) BS01 A1ALA ? GO:0000781 ... Q16531 N/A
    760736 9bbh:A (2.0) BS01 VVP ? GO:0000781 ... Q16531 N/A
    760737 9bbh:A (2.0) BS02 VVP ? GO:0000781 ... Q16531 N/A
    760738 9bbi:A (1.9) BS01 A1ALB ? GO:0000781 ... Q16531 N/A
    760739 9bc2:A (2.75) BS01 peptide N/A GO:0000785 ... P21980 38959038
    760740 9bc3:A (2.52) BS01 peptide N/A GO:0000785 ... P21980 38959038
    760741 9bc3:A (2.52) BS02 CA N/A GO:0000785 ... P21980 38959038
    760742 9bc3:A (2.52) BS03 CA N/A GO:0000785 ... P21980 38959038
    760743 9bc3:B (2.52) BS01 peptide N/A GO:0000785 ... P21980 38959038
    760744 9bc3:B (2.52) BS02 CA N/A GO:0000785 ... P21980 38959038
    760745 9bc3:B (2.52) BS03 CA N/A GO:0000785 ... P21980 38959038
    760746 9bc4:A (1.84) BS01 peptide N/A GO:0000785 ... P21980 38959038
    760747 9bc4:A (1.84) BS02 CA N/A GO:0000785 ... P21980 38959038
    760748 9bc4:A (1.84) BS03 CA N/A GO:0000785 ... P21980 38959038
    760749 9bcb:A (1.45) BS01 A1ALJ ? GO:0005501 ... P82980 N/A
    760750 9bct:A (2.5) BS01 dna N/A GO:0000287 ... Q5JE33 N/A
    760751 9bct:A (2.5) BS02 dna N/A GO:0000287 ... Q5JE33 N/A
    760752 9bct:A (2.5) BS03 rna N/A GO:0000287 ... Q5JE33 N/A
    760753 9bct:A (2.5) BS04 MG N/A GO:0000287 ... Q5JE33 N/A
    760754 9bct:A (2.5) BS05 ZN N/A GO:0000287 ... Q5JE33 N/A
    760755 9bct:A (2.5) BS06 ZN N/A GO:0000287 ... Q5JE33 N/A
    760756 9bct:B (2.5) BS01 dna N/A GO:0000428 ... Q5JE32 N/A
    760757 9bct:B (2.5) BS02 dna N/A GO:0000428 ... Q5JE32 N/A
    760758 9bct:B (2.5) BS03 rna N/A GO:0000428 ... Q5JE32 N/A
    760759 9bct:B (2.5) BS04 ZN N/A GO:0000428 ... Q5JE32 N/A
    760760 9bct:C (2.5) BS01 dna N/A GO:0000428 ... Q5JE34 N/A
    760761 9bct:C (2.5) BS02 dna N/A GO:0000428 ... Q5JE34 N/A
    760762 9bct:E (2.5) BS01 rna N/A GO:0000428 ... Q5JIY4 N/A
    760763 9bct:I (2.5) BS01 ZN N/A GO:0000428 ... Q5JIY5 N/A
    760764 9bct:J (2.5) BS01 rna N/A GO:0003677 ... Q5JH24 N/A
    760765 9bct:J (2.5) BS02 ZN N/A GO:0003677 ... Q5JH24 N/A
    760766 9bct:M (2.5) BS01 rna N/A GO:0003677 ... Q5JH24 N/A
    760767 9bct:M (2.5) BS02 ZN N/A GO:0003677 ... Q5JH24 N/A
    760768 9bct:N (2.5) BS01 ZN N/A GO:0000428 ... Q5JJC9 N/A
    760769 9bct:P (2.5) BS01 ZN N/A GO:0000428 ... Q5JDM8 N/A
    760770 9bcu:A (2.2) BS01 dna N/A GO:0000287 ... Q5JE33 N/A
    760771 9bcu:A (2.2) BS02 dna N/A GO:0000287 ... Q5JE33 N/A
    760772 9bcu:A (2.2) BS03 rna N/A GO:0000287 ... Q5JE33 N/A
    760773 9bcu:A (2.2) BS04 MG N/A GO:0000287 ... Q5JE33 N/A
    760774 9bcu:A (2.2) BS05 ZN N/A GO:0000287 ... Q5JE33 N/A
    760775 9bcu:A (2.2) BS06 ZN N/A GO:0000287 ... Q5JE33 N/A
    760776 9bcu:B (2.2) BS01 dna N/A GO:0000428 ... Q5JE32 N/A
    760777 9bcu:B (2.2) BS02 dna N/A GO:0000428 ... Q5JE32 N/A
    760778 9bcu:B (2.2) BS03 rna N/A GO:0000428 ... Q5JE32 N/A
    760779 9bcu:B (2.2) BS04 ZN N/A GO:0000428 ... Q5JE32 N/A
    760780 9bcu:C (2.2) BS01 dna N/A GO:0000428 ... Q5JE34 N/A
    760781 9bcu:E (2.2) BS01 rna N/A GO:0000428 ... Q5JIY4 N/A
    760782 9bcu:J (2.2) BS01 rna N/A GO:0003677 ... Q5JH24 N/A
    760783 9bcu:J (2.2) BS02 ZN N/A GO:0003677 ... Q5JH24 N/A
    760784 9bcu:M (2.2) BS01 rna N/A GO:0003677 ... Q5JH24 N/A
    760785 9bcu:M (2.2) BS02 ZN N/A GO:0003677 ... Q5JH24 N/A
    760786 9bcu:N (2.2) BS01 ZN N/A GO:0000428 ... Q5JJC9 N/A
    760787 9bcu:P (2.2) BS01 ZN N/A GO:0000428 ... Q5JDM8 N/A
    760788 9bcz:A (1.99) BS01 CA 3.1.4.11 GO:0004435 ... Q2VRL0 N/A
    760789 9bdl:AL02 (2.8) BS01 rna N/A GO:0002181 ... G1TT27 38718836
    760790 9bdl:AL02 (2.8) BS02 rna N/A GO:0002181 ... G1TT27 38718836
    760791 9bdl:AL03 (2.8) BS01 rna N/A GO:0003723 ... G1TL06 38718836
    760792 9bdl:AL04 (2.8) BS01 rna N/A GO:0003723 ... A0A5F9DCT1 38718836
    760793 9bdl:AL04 (2.8) BS02 rna N/A GO:0003723 ... A0A5F9DCT1 38718836
    760794 9bdl:AL05 (2.8) BS01 rna N/A GO:0000027 ... P19949 38718836
    760795 9bdl:AL05 (2.8) BS02 rna N/A GO:0000027 ... P19949 38718836
    760796 9bdl:AL07 (2.8) BS01 rna N/A GO:0000463 ... G1SV32 38718836
    760797 9bdl:AL07 (2.8) BS02 rna N/A GO:0000463 ... G1SV32 38718836
    760798 9bdl:AL09 (2.8) BS01 rna N/A GO:0002181 ... G1SWI6 38718836
    760799 9bdl:AL10 (2.8) BS01 rna N/A GO:0000027 ... B7NZQ2 38718836
    760800 9bdl:AL10 (2.8) BS02 rna N/A GO:0000027 ... B7NZQ2 38718836
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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