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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 761934 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    760001 8z5l:B (2.65) BS03 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    760002 8z5l:B (2.65) BS04 A1LXO 3.5.2.6 GO:0008270 ... P52699 38690676
    760003 8z5l:C (2.65) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    760004 8z5l:C (2.65) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    760005 8z5l:C (2.65) BS03 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    760006 8z5l:C (2.65) BS04 A1LXO 3.5.2.6 GO:0008270 ... P52699 38690676
    760007 8z5l:D (2.65) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    760008 8z5l:D (2.65) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    760009 8z5l:D (2.65) BS03 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    760010 8z75:A (1.45) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    760011 8z75:B (1.45) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    760012 8z75:C (1.45) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    760013 8z76:A (1.8) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    760014 8z76:A (1.8) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    760015 8z76:A (1.8) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    760016 8z76:B (1.8) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    760017 8z76:B (1.8) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    760018 8z76:B (1.8) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    760019 8z76:C (1.8) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    760020 8z76:C (1.8) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    760021 8z76:C (1.8) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    760022 8z77:A (2.0) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    760023 8z77:A (2.0) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    760024 8z77:A (2.0) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    760025 8z77:B (2.0) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    760026 8z77:B (2.0) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    760027 8z77:B (2.0) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    760028 8z77:C (2.0) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    760029 8z77:C (2.0) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    760030 8z77:C (2.0) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    760031 8z85:B (2.3) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    760032 8z85:B (2.3) BS02 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    760033 8z8j:B (3.16) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    760034 8z8j:B (3.16) BS02 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    760035 8z8n:B (2.79) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    760036 8z8n:B (2.79) BS02 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    760037 8z8x:B (3.06) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    760038 8z8x:B (3.06) BS02 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    760039 8z8x:B (3.06) BS03 G2P 2.7.7.48 GO:0000166 ... O41353 38816392
    760040 8z90:B (2.87) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    760041 8z90:B (2.87) BS02 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    760042 8z90:B (2.87) BS03 G2P 2.7.7.48 GO:0000166 ... O41353 38816392
    760043 8z97:B (2.65) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    760044 8z97:B (2.65) BS02 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    760045 8z97:B (2.65) BS03 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    760046 8z97:B (2.65) BS04 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    760047 8z97:B (2.65) BS05 V9G 2.7.7.48 GO:0000166 ... O41353 38816392
    760048 8z98:B (2.52) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    760049 8z9a:D (3.0) BS01 SOU N/A GO:0004984 ... A0A1S6J146 38870272
    760050 8z9h:B (2.7) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    760051 8z9h:B (2.7) BS02 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    760052 8z9h:B (2.7) BS03 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    760053 8z9h:B (2.7) BS04 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    760054 8z9h:B (2.7) BS05 V9G 2.7.7.48 GO:0000166 ... O41353 38816392
    760055 8z9h:I (2.7) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    760056 8z9q:B (2.33) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    760057 8z9r:B (2.58) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    760058 8z9r:B (2.58) BS02 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    760059 8z9r:B (2.58) BS03 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    760060 8z9r:B (2.58) BS04 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    760061 8z9r:I (2.58) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    760062 8zav:A (2.9) BS01 NAP N/A GO:0000166 ... A7TM80 N/A
    760063 8zav:B (2.9) BS01 NAP N/A GO:0000166 ... A7TM80 N/A
    760064 8zb8:A (2.94) BS01 GTP N/A GO:0000226 ... Q2XVP4 N/A
    760065 8zb8:A (2.94) BS02 CA N/A GO:0000226 ... Q2XVP4 N/A
    760066 8zb8:A (2.94) BS03 A1D8I N/A GO:0000226 ... Q2XVP4 N/A
    760067 8zb8:B (2.94) BS01 GDP N/A GO:0005525 ... A0A8D1UIR5 N/A
    760068 8zb8:B (2.94) BS02 A1D8I N/A GO:0005525 ... A0A8D1UIR5 N/A
    760069 8zb8:C (2.94) BS01 GTP N/A GO:0000226 ... Q2XVP4 N/A
    760070 8zb8:C (2.94) BS02 CA N/A GO:0000226 ... Q2XVP4 N/A
    760071 8zb8:D (2.94) BS01 GDP N/A GO:0005525 ... A0A8D1UIR5 N/A
    760072 8zb8:D (2.94) BS02 A1D8I N/A GO:0005525 ... A0A8D1UIR5 N/A
    760073 8zb8:F (2.94) BS01 ACP N/A GO:0046872 ... A0A8V0Z8P0 N/A
    760074 8zbe:A (3.24) BS01 peptide N/A GO:0004930 ... P07550
    P35346    		 38926478
    760075 8zcj:G (3.09) BS01 peptide N/A GO:0004930 ... P07550
    P35346    		 38926478
    760076 8zee:A (2.9) BS01 BCT N/A GO:0005506 ... P07753 38890314
    760077 8zee:A (2.9) BS02 CLA N/A GO:0005506 ... P07753 38890314
    760078 8zee:A (2.9) BS03 PHO N/A GO:0005506 ... P07753 38890314
    760079 8zee:A (2.9) BS04 FE2 N/A GO:0005506 ... P07753 38890314
    760080 8zee:A (2.9) BS05 CLA N/A GO:0005506 ... P07753 38890314
    760081 8zee:A (2.9) BS06 CLA N/A GO:0005506 ... P07753 38890314
    760082 8zee:A (2.9) BS07 CLA N/A GO:0005506 ... P07753 38890314
    760083 8zee:B (2.9) BS01 CLA N/A GO:0009507 ... P37255 38890314
    760084 8zee:B (2.9) BS02 CLA N/A GO:0009507 ... P37255 38890314
    760085 8zee:B (2.9) BS03 CLA N/A GO:0009507 ... P37255 38890314
    760086 8zee:B (2.9) BS04 CLA N/A GO:0009507 ... P37255 38890314
    760087 8zee:B (2.9) BS05 CLA N/A GO:0009507 ... P37255 38890314
    760088 8zee:B (2.9) BS06 CLA N/A GO:0009507 ... P37255 38890314
    760089 8zee:B (2.9) BS07 CLA N/A GO:0009507 ... P37255 38890314
    760090 8zee:B (2.9) BS08 CLA N/A GO:0009507 ... P37255 38890314
    760091 8zee:B (2.9) BS09 CLA N/A GO:0009507 ... P37255 38890314
    760092 8zee:B (2.9) BS10 CLA N/A GO:0009507 ... P37255 38890314
    760093 8zee:B (2.9) BS11 CLA N/A GO:0009507 ... P37255 38890314
    760094 8zee:B (2.9) BS12 CLA N/A GO:0009507 ... P37255 38890314
    760095 8zee:B (2.9) BS13 CLA N/A GO:0009507 ... P37255 38890314
    760096 8zee:B (2.9) BS14 CLA N/A GO:0009507 ... P37255 38890314
    760097 8zee:B (2.9) BS15 CLA N/A GO:0009507 ... P37255 38890314
    760098 8zee:C (2.9) BS01 CLA N/A GO:0005737 ... P10898 38890314
    760099 8zee:C (2.9) BS02 CLA N/A GO:0005737 ... P10898 38890314
    760100 8zee:C (2.9) BS03 CLA N/A GO:0005737 ... P10898 38890314
    760101 8zee:C (2.9) BS04 CLA N/A GO:0005737 ... P10898 38890314
    760102 8zee:C (2.9) BS05 CLA N/A GO:0005737 ... P10898 38890314
    760103 8zee:C (2.9) BS06 CLA N/A GO:0005737 ... P10898 38890314
    760104 8zee:C (2.9) BS07 CLA N/A GO:0005737 ... P10898 38890314
    760105 8zee:C (2.9) BS08 CLA N/A GO:0005737 ... P10898 38890314
    760106 8zee:C (2.9) BS09 CLA N/A GO:0005737 ... P10898 38890314
    760107 8zee:C (2.9) BS10 CLA N/A GO:0005737 ... P10898 38890314
    760108 8zee:C (2.9) BS11 CLA N/A GO:0005737 ... P10898 38890314
    760109 8zee:C (2.9) BS12 CLA N/A GO:0005737 ... P10898 38890314
    760110 8zee:C (2.9) BS13 CLA N/A GO:0005737 ... P10898 38890314
    760111 8zee:D (2.9) BS01 CLA N/A GO:0005506 ... P06007 38890314
    760112 8zee:D (2.9) BS02 BCT N/A GO:0005506 ... P06007 38890314
    760113 8zee:D (2.9) BS03 CLA N/A GO:0005506 ... P06007 38890314
    760114 8zee:D (2.9) BS04 CLA N/A GO:0005506 ... P06007 38890314
    760115 8zee:D (2.9) BS05 CLA N/A GO:0005506 ... P06007 38890314
    760116 8zee:D (2.9) BS06 PHO N/A GO:0005506 ... P06007 38890314
    760117 8zee:D (2.9) BS07 PHO N/A GO:0005506 ... P06007 38890314
    760118 8zee:D (2.9) BS08 FE2 N/A GO:0005506 ... P06007 38890314
    760119 8zee:D (2.9) BS09 CLA N/A GO:0005506 ... P06007 38890314
    760120 8zee:E (2.9) BS01 HEM N/A GO:0005506 ... P48268 38890314
    760121 8zee:F (2.9) BS01 HEM N/A GO:0005506 ... Q08363 38890314
    760122 8zee:F (2.9) BS02 VTQ N/A GO:0005506 ... Q08363 38890314
    760123 8zfk:A (2.64) BS01 A1D8E N/A GO:0042597 ... G5EG88
    P0ABE7    		 N/A
    760124 8zfk:A (2.64) BS02 A1D8E N/A GO:0042597 ... G5EG88
    P0ABE7    		 N/A
    760125 8zfk:B (2.64) BS01 A1D8E N/A GO:0042597 ... G5EG88
    P0ABE7    		 N/A
    760126 8zfk:B (2.64) BS02 A1D8E N/A GO:0042597 ... G5EG88
    P0ABE7    		 N/A
    760127 8zfk:C (2.64) BS01 A1D8E N/A GO:0042597 ... G5EG88
    P0ABE7    		 N/A
    760128 8zfk:C (2.64) BS02 A1D8E N/A GO:0042597 ... G5EG88
    P0ABE7    		 N/A
    760129 8zfk:D (2.64) BS01 A1D8E N/A GO:0042597 ... G5EG88
    P0ABE7    		 N/A
    760130 8zfk:D (2.64) BS02 A1D8E N/A GO:0042597 ... G5EG88
    P0ABE7    		 N/A
    760131 8zfk:E (2.64) BS01 A1D8E N/A GO:0042597 ... G5EG88
    P0ABE7    		 N/A
    760132 8zfk:E (2.64) BS02 A1D8E N/A GO:0042597 ... G5EG88
    P0ABE7    		 N/A
    760133 8zgs:B (3.04) BS01 Y01 N/A GO:0005768 ... P13386 39169187
    760134 8zgt:B (2.96) BS01 Y01 N/A GO:0005768 ... P13386 39169187
    760135 8zj2:D (4.66) BS01 MG N/A GO:0003924 ... P84095 38857861
    760136 8zj2:D (4.66) BS02 GTP N/A GO:0003924 ... P84095 38857861
    760137 8zje:R (3.07) BS01 peptide N/A GO:0004930 ... Q969F8 N/A
    760138 8zjv:A (1.8) BS01 5ID 2.7.11.24 GO:0000165 ... P28482 N/A
    760139 8zkc:A (2.85) BS01 MG ? GO:0005524 ... P0AF08 38797154
    760140 8zly:A (1.89) BS01 FBP N/A GO:0004743 ... Q8DQ84 39009072
    760141 8zly:A (1.89) BS02 MG N/A GO:0004743 ... Q8DQ84 39009072
    760142 8zly:A (1.89) BS03 UDP N/A GO:0004743 ... Q8DQ84 39009072
    760143 8zly:A (1.89) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    760144 8zly:B (1.89) BS01 FBP N/A GO:0004743 ... Q8DQ84 39009072
    760145 8zly:B (1.89) BS02 MG N/A GO:0004743 ... Q8DQ84 39009072
    760146 8zly:B (1.89) BS03 UDP N/A GO:0004743 ... Q8DQ84 39009072
    760147 8zly:B (1.89) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    760148 8zly:C (1.89) BS01 FBP N/A GO:0004743 ... Q8DQ84 39009072
    760149 8zly:C (1.89) BS02 MG N/A GO:0004743 ... Q8DQ84 39009072
    760150 8zly:C (1.89) BS03 UDP N/A GO:0004743 ... Q8DQ84 39009072
    760151 8zly:C (1.89) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    760152 8zly:D (1.89) BS01 FBP N/A GO:0004743 ... Q8DQ84 39009072
    760153 8zly:D (1.89) BS02 MG N/A GO:0004743 ... Q8DQ84 39009072
    760154 8zly:D (1.89) BS03 UDP N/A GO:0004743 ... Q8DQ84 39009072
    760155 8zly:D (1.89) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    760156 8zly:E (1.89) BS01 FBP N/A GO:0004743 ... Q8DQ84 39009072
    760157 8zly:E (1.89) BS02 MG N/A GO:0004743 ... Q8DQ84 39009072
    760158 8zly:E (1.89) BS03 UDP N/A GO:0004743 ... Q8DQ84 39009072
    760159 8zly:E (1.89) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    760160 8zly:F (1.89) BS01 FBP N/A GO:0004743 ... Q8DQ84 39009072
    760161 8zly:F (1.89) BS02 MG N/A GO:0004743 ... Q8DQ84 39009072
    760162 8zly:F (1.89) BS03 UDP N/A GO:0004743 ... Q8DQ84 39009072
    760163 8zly:F (1.89) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    760164 8zly:G (1.89) BS01 FBP N/A GO:0004743 ... Q8DQ84 39009072
    760165 8zly:G (1.89) BS02 MG N/A GO:0004743 ... Q8DQ84 39009072
    760166 8zly:G (1.89) BS03 UDP N/A GO:0004743 ... Q8DQ84 39009072
    760167 8zly:G (1.89) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    760168 8zly:H (1.89) BS01 FBP N/A GO:0004743 ... Q8DQ84 39009072
    760169 8zly:H (1.89) BS02 MG N/A GO:0004743 ... Q8DQ84 39009072
    760170 8zly:H (1.89) BS03 OXL N/A GO:0004743 ... Q8DQ84 39009072
    760171 8zm1:A (2.35) BS01 A1L16 N/A GO:0004672 ... Q15119 38844173
    760172 8zm2:A (2.34) BS01 A1L17 N/A GO:0004672 ... Q15119 38844173
    760173 8zmr:A (3.5) BS01 A1LWL N/A GO:0005277 ... P0AEX9
    Q16572    		 38862671
    760174 8zn1:A (3.0) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    760175 8zn1:B (3.0) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    760176 8zn1:C (3.0) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    760177 8zn1:D (3.0) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    760178 8zn2:A (2.651) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    760179 8zn2:B (2.651) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    760180 8zn2:C (2.651) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    760181 8zn2:D (2.651) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    760182 8zn2:E (2.651) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    760183 8zn2:F (2.651) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    760184 8zn3:A (2.41) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    760185 8zn3:B (2.41) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    760186 8zn3:C (2.41) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    760187 8zn3:D (2.41) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    760188 8zn3:E (2.41) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    760189 8zn3:F (2.41) BS01 PAE 2.7.7.3 GO:0004595 ... A4W515 N/A
    760190 8zn4:A (2.3) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    760191 8zn4:B (2.3) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    760192 8zn4:C (2.3) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    760193 8zn4:D (2.3) BS01 NAD 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    760194 8znb:A (2.53) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 N/A
    760195 8znc:A (2.41) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 N/A
    760196 8znc:A (2.41) BS02 AKG 1.4.1.3 GO:0004352 ... O74024 N/A
    760197 8znd:A (2.53) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 N/A
    760198 8zne:A (2.64) BS01 NAP N/A GO:0004352 ... O74024 N/A
    760199 8zne:A (2.64) BS02 GLU N/A GO:0004352 ... O74024 N/A
    760200 8zng:A (2.5) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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