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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 761934 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    758001 8xr6:E (2.53) BS01 peptide N/A GO:0005506 ... A0A222AI74 N/A
    758002 8xr6:E (2.53) BS02 HEM N/A GO:0005506 ... A0A222AI74 N/A
    758003 8xr6:a (2.53) BS01 peptide N/A GO:0005506 ... A0A222AI41 N/A
    758004 8xr6:a (2.53) BS02 OEX N/A GO:0005506 ... A0A222AI41 N/A
    758005 8xr6:a (2.53) BS03 FE2 N/A GO:0005506 ... A0A222AI41 N/A
    758006 8xr6:a (2.53) BS04 BCT N/A GO:0005506 ... A0A222AI41 N/A
    758007 8xr6:a (2.53) BS05 CLA N/A GO:0005506 ... A0A222AI41 N/A
    758008 8xr6:a (2.53) BS06 CLA N/A GO:0005506 ... A0A222AI41 N/A
    758009 8xr6:a (2.53) BS07 PHO N/A GO:0005506 ... A0A222AI41 N/A
    758010 8xr6:a (2.53) BS08 CLA N/A GO:0005506 ... A0A222AI41 N/A
    758011 8xr6:a (2.53) BS09 8CT N/A GO:0005506 ... A0A222AI41 N/A
    758012 8xr6:a (2.53) BS10 CLA N/A GO:0005506 ... A0A222AI41 N/A
    758013 8xr6:a (2.53) BS11 CLA N/A GO:0005506 ... A0A222AI41 N/A
    758014 8xr6:a (2.53) BS12 PHO N/A GO:0005506 ... A0A222AI41 N/A
    758015 8xr6:b (2.53) BS01 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    758016 8xr6:b (2.53) BS02 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    758017 8xr6:b (2.53) BS03 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    758018 8xr6:b (2.53) BS04 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    758019 8xr6:b (2.53) BS05 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    758020 8xr6:b (2.53) BS06 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    758021 8xr6:b (2.53) BS07 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    758022 8xr6:b (2.53) BS08 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    758023 8xr6:b (2.53) BS09 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    758024 8xr6:b (2.53) BS10 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    758025 8xr6:b (2.53) BS11 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    758026 8xr6:b (2.53) BS12 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    758027 8xr6:b (2.53) BS13 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    758028 8xr6:b (2.53) BS14 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    758029 8xr6:b (2.53) BS15 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    758030 8xr6:b (2.53) BS16 CLA N/A GO:0009523 ... A0A222AIE3 N/A
    758031 8xr6:b (2.53) BS17 8CT N/A GO:0009523 ... A0A222AIE3 N/A
    758032 8xr6:b (2.53) BS18 8CT N/A GO:0009523 ... A0A222AIE3 N/A
    758033 8xr6:b (2.53) BS19 8CT N/A GO:0009523 ... A0A222AIE3 N/A
    758034 8xr6:c (2.53) BS01 OEX N/A GO:0005737 ... A0A222AI36 N/A
    758035 8xr6:c (2.53) BS02 CLA N/A GO:0005737 ... A0A222AI36 N/A
    758036 8xr6:c (2.53) BS03 CLA N/A GO:0005737 ... A0A222AI36 N/A
    758037 8xr6:c (2.53) BS04 CLA N/A GO:0005737 ... A0A222AI36 N/A
    758038 8xr6:c (2.53) BS05 CLA N/A GO:0005737 ... A0A222AI36 N/A
    758039 8xr6:c (2.53) BS06 CLA N/A GO:0005737 ... A0A222AI36 N/A
    758040 8xr6:c (2.53) BS07 CLA N/A GO:0005737 ... A0A222AI36 N/A
    758041 8xr6:c (2.53) BS08 CLA N/A GO:0005737 ... A0A222AI36 N/A
    758042 8xr6:c (2.53) BS09 CLA N/A GO:0005737 ... A0A222AI36 N/A
    758043 8xr6:c (2.53) BS10 CLA N/A GO:0005737 ... A0A222AI36 N/A
    758044 8xr6:c (2.53) BS11 CLA N/A GO:0005737 ... A0A222AI36 N/A
    758045 8xr6:c (2.53) BS12 CLA N/A GO:0005737 ... A0A222AI36 N/A
    758046 8xr6:c (2.53) BS13 CLA N/A GO:0005737 ... A0A222AI36 N/A
    758047 8xr6:c (2.53) BS14 CLA N/A GO:0005737 ... A0A222AI36 N/A
    758048 8xr6:c (2.53) BS15 8CT N/A GO:0005737 ... A0A222AI36 N/A
    758049 8xr6:c (2.53) BS16 8CT N/A GO:0005737 ... A0A222AI36 N/A
    758050 8xr6:c (2.53) BS17 8CT N/A GO:0005737 ... A0A222AI36 N/A
    758051 8xr6:d (2.53) BS01 peptide N/A GO:0005506 ... A0A222AI37 N/A
    758052 8xr6:d (2.53) BS02 FE2 N/A GO:0005506 ... A0A222AI37 N/A
    758053 8xr6:d (2.53) BS03 BCT N/A GO:0005506 ... A0A222AI37 N/A
    758054 8xr6:d (2.53) BS04 CLA N/A GO:0005506 ... A0A222AI37 N/A
    758055 8xr6:d (2.53) BS05 CLA N/A GO:0005506 ... A0A222AI37 N/A
    758056 8xr6:d (2.53) BS06 PHO N/A GO:0005506 ... A0A222AI37 N/A
    758057 8xr6:d (2.53) BS07 CLA N/A GO:0005506 ... A0A222AI37 N/A
    758058 8xr6:d (2.53) BS08 CLA N/A GO:0005506 ... A0A222AI37 N/A
    758059 8xr6:d (2.53) BS09 PHO N/A GO:0005506 ... A0A222AI37 N/A
    758060 8xr6:d (2.53) BS10 CLA N/A GO:0005506 ... A0A222AI37 N/A
    758061 8xr6:d (2.53) BS11 CLA N/A GO:0005506 ... A0A222AI37 N/A
    758062 8xr6:d (2.53) BS12 8CT N/A GO:0005506 ... A0A222AI37 N/A
    758063 8xr6:e (2.53) BS01 peptide N/A GO:0005506 ... A0A222AI74 N/A
    758064 8xr6:e (2.53) BS02 HEM N/A GO:0005506 ... A0A222AI74 N/A
    758065 8xrt:A (2.4) BS01 CA N/A GO:0004553 ... N/A 38527679
    758066 8xrt:B (2.4) BS01 CA N/A GO:0004553 ... N/A 38527679
    758067 8xrt:C (2.4) BS01 CA N/A GO:0004553 ... N/A 38527679
    758068 8xrt:D (2.4) BS01 CA N/A GO:0004553 ... N/A 38527679
    758069 8xrt:E (2.4) BS01 CA N/A GO:0004553 ... N/A 38527679
    758070 8xrt:F (2.4) BS01 CA N/A GO:0004553 ... N/A 38527679
    758071 8xru:A (2.02) BS01 CA N/A GO:0004553 ... N/A 38527679
    758072 8xru:B (2.02) BS01 CA N/A GO:0004553 ... N/A 38527679
    758073 8xrv:A (2.4) BS01 BGC N/A GO:0004553 ... N/A 38527679
    758074 8xrv:A (2.4) BS02 CA N/A GO:0004553 ... N/A 38527679
    758075 8xrv:B (2.4) BS01 BGC N/A GO:0004553 ... N/A 38527679
    758076 8xrv:B (2.4) BS02 CA N/A GO:0004553 ... N/A 38527679
    758077 8xrv:C (2.4) BS01 BGC N/A GO:0004553 ... N/A 38527679
    758078 8xrv:C (2.4) BS02 CA N/A GO:0004553 ... N/A 38527679
    758079 8xrv:D (2.4) BS01 BGC N/A GO:0004553 ... N/A 38527679
    758080 8xrv:D (2.4) BS02 CA N/A GO:0004553 ... N/A 38527679
    758081 8xrv:E (2.4) BS01 BGC N/A GO:0004553 ... N/A 38527679
    758082 8xrv:E (2.4) BS02 CA N/A GO:0004553 ... N/A 38527679
    758083 8xrv:F (2.4) BS01 BGC N/A GO:0004553 ... N/A 38527679
    758084 8xrv:F (2.4) BS02 CA N/A GO:0004553 ... N/A 38527679
    758085 8xrx:A (2.5) BS01 BGC N/A GO:0004553 ... N/A 38527679
    758086 8xrx:A (2.5) BS02 BGC N/A GO:0004553 ... N/A 38527679
    758087 8xrx:A (2.5) BS03 CA N/A GO:0004553 ... N/A 38527679
    758088 8xrx:B (2.5) BS01 BGC N/A GO:0004553 ... N/A 38527679
    758089 8xrx:B (2.5) BS02 GLC N/A GO:0004553 ... N/A 38527679
    758090 8xrx:B (2.5) BS03 CA N/A GO:0004553 ... N/A 38527679
    758091 8xrx:C (2.5) BS01 BGC N/A GO:0004553 ... N/A 38527679
    758092 8xrx:C (2.5) BS02 CA N/A GO:0004553 ... N/A 38527679
    758093 8xrx:D (2.5) BS01 BGC N/A GO:0004553 ... N/A 38527679
    758094 8xrx:D (2.5) BS02 CA N/A GO:0004553 ... N/A 38527679
    758095 8xrx:E (2.5) BS01 CA N/A GO:0004553 ... N/A 38527679
    758096 8xrx:F (2.5) BS01 BGC N/A GO:0004553 ... N/A 38527679
    758097 8xrx:F (2.5) BS02 CA N/A GO:0004553 ... N/A 38527679
    758098 8xsx:CA (2.4) BS01 rna N/A GO:0003676 ... Q9UQ80 38942792
    758099 8xsx:CB (2.4) BS01 rna N/A GO:0002244 ... P13639 38942792
    758100 8xsx:CB (2.4) BS02 rna N/A GO:0002244 ... P13639 38942792
    758101 8xsx:CB (2.4) BS03 ADP N/A GO:0002244 ... P13639 38942792
    758102 8xsx:CD (2.4) BS01 rna N/A GO:0003723 ... Q8NC51 38942792
    758103 8xsx:LA (2.4) BS01 rna N/A GO:0002181 ... P62917 38942792
    758104 8xsx:LA (2.4) BS02 rna N/A GO:0002181 ... P62917 38942792
    758105 8xsx:LA (2.4) BS03 MG N/A GO:0002181 ... P62917 38942792
    758106 8xsx:LB (2.4) BS01 rna N/A GO:0002181 ... P39023 38942792
    758107 8xsx:LC (2.4) BS01 rna N/A GO:0002181 ... P36578 38942792
    758108 8xsx:LC (2.4) BS02 rna N/A GO:0002181 ... P36578 38942792
    758109 8xsx:LD (2.4) BS01 rna N/A GO:0000027 ... P46777 38942792
    758110 8xsx:LD (2.4) BS02 rna N/A GO:0000027 ... P46777 38942792
    758111 8xsx:LE (2.4) BS01 rna N/A GO:0000027 ... Q02878 38942792
    758112 8xsx:LF (2.4) BS01 rna N/A GO:0000463 ... P18124 38942792
    758113 8xsx:LF (2.4) BS02 rna N/A GO:0000463 ... P18124 38942792
    758114 8xsx:LG (2.4) BS01 rna N/A GO:0000470 ... P62424 38942792
    758115 8xsx:LG (2.4) BS02 rna N/A GO:0000470 ... P62424 38942792
    758116 8xsx:LH (2.4) BS01 rna N/A GO:0002181 ... P32969 38942792
    758117 8xsx:LI (2.4) BS01 rna N/A GO:0000027 ... Q96L21 38942792
    758118 8xsx:LI (2.4) BS02 rna N/A GO:0000027 ... Q96L21 38942792
    758119 8xsx:LJ (2.4) BS01 rna N/A GO:0000027 ... P62913 38942792
    758120 8xsx:LJ (2.4) BS02 rna N/A GO:0000027 ... P62913 38942792
    758121 8xsx:LK (2.4) BS01 rna N/A GO:0002181 ... P30050 38942792
    758122 8xsx:LL (2.4) BS01 rna N/A GO:0001824 ... P26373 38942792
    758123 8xsx:LL (2.4) BS02 rna N/A GO:0001824 ... P26373 38942792
    758124 8xsx:LM (2.4) BS01 rna N/A GO:0002181 ... P50914 38942792
    758125 8xsx:LN (2.4) BS01 rna N/A GO:0002181 ... P61313 38942792
    758126 8xsx:LN (2.4) BS02 rna N/A GO:0002181 ... P61313 38942792
    758127 8xsx:LO (2.4) BS01 rna N/A GO:0002181 ... P40429 38942792
    758128 8xsx:LP (2.4) BS01 rna N/A GO:0002181 ... P18621 38942792
    758129 8xsx:LP (2.4) BS02 rna N/A GO:0002181 ... P18621 38942792
    758130 8xsx:LQ (2.4) BS01 rna N/A GO:0002181 ... Q07020 38942792
    758131 8xsx:LR (2.4) BS01 rna N/A GO:0002181 ... P84098 38942792
    758132 8xsx:LR (2.4) BS02 rna N/A GO:0002181 ... P84098 38942792
    758133 8xsx:LS (2.4) BS01 rna N/A GO:0002181 ... Q02543 38942792
    758134 8xsx:LS (2.4) BS02 rna N/A GO:0002181 ... Q02543 38942792
    758135 8xsx:LT (2.4) BS01 rna N/A GO:0002181 ... P46778 38942792
    758136 8xsx:LT (2.4) BS02 rna N/A GO:0002181 ... P46778 38942792
    758137 8xsx:LU (2.4) BS01 rna N/A GO:0002181 ... P35268 38942792
    758138 8xsx:LV (2.4) BS01 rna N/A GO:0000122 ... P62829 38942792
    758139 8xsx:LW (2.4) BS01 rna N/A GO:0000027 ... P83731 38942792
    758140 8xsx:LW (2.4) BS02 rna N/A GO:0000027 ... P83731 38942792
    758141 8xsx:LX (2.4) BS01 rna N/A GO:0000027 ... P62750 38942792
    758142 8xsx:LX (2.4) BS02 rna N/A GO:0000027 ... P62750 38942792
    758143 8xsx:LY (2.4) BS01 rna N/A GO:0002181 ... P61254 38942792
    758144 8xsx:LY (2.4) BS02 rna N/A GO:0002181 ... P61254 38942792
    758145 8xsx:LZ (2.4) BS01 rna N/A GO:0002181 ... P61353 38942792
    758146 8xsx:La (2.4) BS01 rna N/A GO:0002181 ... P46776 38942792
    758147 8xsx:Lb (2.4) BS01 rna N/A GO:0002181 ... P47914 38942792
    758148 8xsx:Lc (2.4) BS01 rna N/A GO:0002181 ... P62888 38942792
    758149 8xsx:Lc (2.4) BS02 rna N/A GO:0002181 ... P62888 38942792
    758150 8xsx:Ld (2.4) BS01 rna N/A GO:0002181 ... P62899 38942792
    758151 8xsx:Le (2.4) BS01 rna N/A GO:0002181 ... P62910 38942792
    758152 8xsx:Le (2.4) BS02 MG N/A GO:0002181 ... P62910 38942792
    758153 8xsx:Lf (2.4) BS01 rna N/A GO:0000049 ... P18077 38942792
    758154 8xsx:Lg (2.4) BS01 rna N/A GO:0002181 ... P49207 38942792
    758155 8xsx:Lg (2.4) BS02 MG N/A GO:0002181 ... P49207 38942792
    758156 8xsx:Lg (2.4) BS03 ZN N/A GO:0002181 ... P49207 38942792
    758157 8xsx:Lh (2.4) BS01 rna N/A GO:0000463 ... P42766 38942792
    758158 8xsx:Lh (2.4) BS02 rna N/A GO:0000463 ... P42766 38942792
    758159 8xsx:Li (2.4) BS01 rna N/A GO:0002181 ... Q9Y3U8 38942792
    758160 8xsx:Lj (2.4) BS01 rna N/A GO:0002181 ... P61927 38942792
    758161 8xsx:Lj (2.4) BS02 rna N/A GO:0002181 ... P61927 38942792
    758162 8xsx:Lj (2.4) BS03 ZN N/A GO:0002181 ... P61927 38942792
    758163 8xsx:Lk (2.4) BS01 rna N/A GO:0001501 ... P63173 38942792
    758164 8xsx:Ll (2.4) BS01 rna N/A GO:0002181 ... P62891 38942792
    758165 8xsx:Ll (2.4) BS02 rna N/A GO:0002181 ... P62891 38942792
    758166 8xsx:Lm (2.4) BS01 rna N/A GO:0002181 ... P62987 38942792
    758167 8xsx:Lm (2.4) BS02 ZN N/A GO:0002181 ... P62987 38942792
    758168 8xsx:Lo (2.4) BS01 rna N/A GO:0002181 ... P83881 38942792
    758169 8xsx:Lo (2.4) BS02 rna N/A GO:0002181 ... P83881 38942792
    758170 8xsx:Lo (2.4) BS03 ZN N/A GO:0002181 ... P83881 38942792
    758171 8xsx:Lp (2.4) BS01 rna N/A GO:0002181 ... P61513 38942792
    758172 8xsx:Lp (2.4) BS02 ZN N/A GO:0002181 ... P61513 38942792
    758173 8xsx:Lr (2.4) BS01 rna N/A GO:0002181 ... P46779 38942792
    758174 8xsx:Ls (2.4) BS01 rna N/A GO:0000027 ... P05388 38942792
    758175 8xsx:Lz (2.4) BS01 rna N/A GO:0002181 ... P62906 38942792
    758176 8xsx:SA (2.4) BS01 rna N/A GO:0000028 ... P08865 38942792
    758177 8xsx:SB (2.4) BS01 rna N/A GO:0002181 ... P61247 38942792
    758178 8xsx:SC (2.4) BS01 rna N/A GO:0002181 ... P15880 38942792
    758179 8xsx:SD (2.4) BS01 rna N/A GO:0000977 ... P23396 38942792
    758180 8xsx:SE (2.4) BS01 rna N/A GO:0002181 ... P62701 38942792
    758181 8xsx:SF (2.4) BS01 rna N/A GO:0000028 ... P46782 38942792
    758182 8xsx:SG (2.4) BS01 rna N/A GO:0000082 ... P62753 38942792
    758183 8xsx:SH (2.4) BS01 rna N/A GO:0001843 ... P62081 38942792
    758184 8xsx:SI (2.4) BS01 rna N/A GO:0000462 ... P62241 38942792
    758185 8xsx:SI (2.4) BS02 rna N/A GO:0000462 ... P62241 38942792
    758186 8xsx:SJ (2.4) BS01 rna N/A GO:0002181 ... P46781 38942792
    758187 8xsx:SK (2.4) BS01 rna N/A GO:0002181 ... P46783 38942792
    758188 8xsx:SL (2.4) BS01 rna N/A GO:0002181 ... P62280 38942792
    758189 8xsx:SM (2.4) BS01 rna N/A GO:0002181 ... P25398 38942792
    758190 8xsx:SN (2.4) BS01 rna N/A GO:0002181 ... P62277 38942792
    758191 8xsx:SN (2.4) BS02 rna N/A GO:0002181 ... P62277 38942792
    758192 8xsx:SO (2.4) BS01 rna N/A GO:0000028 ... P62263 38942792
    758193 8xsx:SP (2.4) BS01 rna N/A GO:0000028 ... P62841 38942792
    758194 8xsx:SQ (2.4) BS01 rna N/A GO:0000462 ... P62249 38942792
    758195 8xsx:SR (2.4) BS01 rna N/A GO:0002181 ... P08708 38942792
    758196 8xsx:SS (2.4) BS01 rna N/A GO:0002181 ... P62269 38942792
    758197 8xsx:ST (2.4) BS01 rna N/A GO:0000028 ... P39019 38942792
    758198 8xsx:SU (2.4) BS01 rna N/A GO:0002181 ... P60866 38942792
    758199 8xsx:SW (2.4) BS01 rna N/A GO:0002181 ... P62244 38942792
    758200 8xsx:SX (2.4) BS01 rna N/A GO:0002181 ... P62266 38942792
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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