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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    12801 1fv1:E (1.9) BS01 peptide ? GO:0006955 ... Q30154 11080454
    12802 1fv2:A (2.5) BS01 GAL 3.4.24.68 GO:0005576 ... P04958 11418600
    12803 1fv3:A (2.3) BS01 GAL 3.4.24.68 GO:0005576 ... P04958 11418600
    12804 1fv3:B (2.3) BS01 GAL 3.4.24.68 GO:0005576 ... P04958 11418600
    12805 1fv5:A (-1.00) BS01 ZN ? GO:0006357 ... Q9VPQ6 11080638
    12806 1fv9:A (3.0) BS01 172 3.4.21.73 GO:0004252 ... P00749 11052791 PDBbind: -logKd/Ki=5.00, IC50=10uM
    12807 1fvi:A (2.0) BS01 AMP 6.5.1.- GO:0000166 ... A7RCB1 11106756
    12808 1fvo:A (2.6) BS01 CP 2.1.3.3 GO:0000050 ... P00480 11237854
    12809 1fvo:B (2.6) BS01 CP 2.1.3.3 GO:0000050 ... P00480 11237854
    12810 1fvp:A (2.7) BS01 FMA ? GO:0016705 ... P12745 15299728
    12811 1fvp:A (2.7) BS02 FMA ? GO:0016705 ... P12745 15299728
    12812 1fvp:A (2.7) BS03 FMA ? GO:0016705 ... P12745 15299728
    12813 1fvp:B (2.7) BS01 FMA ? GO:0016705 ... P12745 15299728
    12814 1fvp:B (2.7) BS02 FMA ? GO:0016705 ... P12745 15299728
    12815 1fvp:B (2.7) BS03 FMA ? GO:0016705 ... P12745 15299728
    12816 1fvs:A (-1.00) BS01 CU 7.2.2.8 GO:0046872 ... P38995 11083871
    12817 1fvt:A (2.2) BS01 106 2.7.11.22 GO:0000082 ... P24941 11141566 PDBbind: -logKd/Ki=7.22, IC50=60nM
    BindingDB: IC50=60nM
    12818 1fvu:B (1.8) BS01 MG ? GO:0005576 ... P22030 11148028
    12819 1fvu:D (1.8) BS01 MG ? GO:0005576 ... P22030 11148028
    12820 1fvv:A (2.8) BS01 107 2.7.11.22 GO:0000082 ... P24941 11141566 PDBbind: -logKd/Ki=8.00, IC50=10nM
    12821 1fvv:C (2.8) BS01 107 2.7.11.22 GO:0000082 ... P24941 11141566
    12822 1fvx:A (1.9) BS01 FMN ? GO:0009055 ... P00322 9063874
    12823 1fw0:A (1.9) BS01 KAI ? GO:0015276 ... P19491 11086992 PDBbind: -logKd/Ki=5.43, Ki=3690nM
    BindingDB: EC50=380000nM, Ki=3690nM
    12824 1fw1:A (1.9) BS01 SO4 2.5.1.18
    5.2.1.2
    GO:0003824 ... O43708 11327815
    12825 1fw1:A (1.9) BS02 GSH 2.5.1.18
    5.2.1.2
    GO:0003824 ... O43708 11327815
    12826 1fw2:A (2.6) BS01 CA 3.1.1.32
    3.1.1.4
    GO:0004620 ... P0A921 11371166
    12827 1fw4:A (1.7) BS01 CA ? GO:0005509 ... P62157 11320306
    12828 1fw4:A (1.7) BS02 CA ? GO:0005509 ... P62157 11320306
    12829 1fw6:A (2.7) BS01 dna ? GO:0003677 ... Q56215 11172706
    12830 1fw6:A (2.7) BS02 dna ? GO:0003677 ... Q56215 11172706
    12831 1fw6:A (2.7) BS03 ADP ? GO:0003677 ... Q56215 11172706
    12832 1fw6:B (2.7) BS01 dna ? GO:0003677 ... Q56215 11172706
    12833 1fw6:B (2.7) BS02 dna ? GO:0003677 ... Q56215 11172706
    12834 1fw6:B (2.7) BS03 ADP ? GO:0003677 ... Q56215 11172706
    12835 1fwa:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    12836 1fwa:C (2.0) BS02 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    12837 1fwa:C (2.0) BS03 CO3 3.5.1.5 GO:0005515 ... P18314 9201965
    12838 1fwb:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    12839 1fwb:C (2.0) BS02 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    12840 1fwc:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    12841 1fwc:C (2.0) BS02 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    12842 1fwd:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    12843 1fwd:C (2.0) BS02 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    12844 1fwe:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    12845 1fwe:C (2.0) BS02 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    12846 1fwe:C (2.0) BS03 HAE 3.5.1.5 GO:0005515 ... P18314 9201965 PDBbind: -logKd/Ki=5.60, Ki=2.5uM
    12847 1fwf:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    12848 1fwf:C (2.0) BS02 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    12849 1fwg:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    12850 1fwg:C (2.0) BS02 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    12851 1fwh:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    12852 1fwh:C (2.0) BS02 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    12853 1fwi:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 8702515
    12854 1fwj:C (2.2) BS01 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    12855 1fwj:C (2.2) BS02 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    12856 1fwk:A (2.1) BS01 ADP 2.7.1.39 GO:0004413 ... Q58504 11188689
    12857 1fwk:B (2.1) BS01 ADP 2.7.1.39 GO:0004413 ... Q58504 11188689
    12858 1fwk:C (2.1) BS01 ADP 2.7.1.39 GO:0004413 ... Q58504 11188689
    12859 1fwk:D (2.1) BS01 ADP 2.7.1.39 GO:0004413 ... Q58504 11188689
    12860 1fwm:A (2.2) BS01 SO4 2.1.1.45 GO:0000287 ... P0A884 16615077
    12861 1fwm:B (2.2) BS01 SO4 2.1.1.45 GO:0000287 ... P0A884 16615077
    12862 1fwn:A (1.94) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 11115499
    12863 1fwn:B (1.94) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 11115499
    12864 1fwq:A (-1.00) BS01 ZN ? GO:0005085 ... P47224 7651540
    12865 1fws:A (1.9) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 19228070
    12866 1fws:B (1.9) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 19228070
    12867 1fwt:A (1.9) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 11115499
    12868 1fwt:A (1.9) BS02 E4P 2.5.1.55 GO:0005737 ... O66496 11115499
    12869 1fwt:B (1.9) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 11115499
    12870 1fww:A (1.85) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 19228070
    12871 1fww:A (1.85) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 19228070
    12872 1fww:B (1.85) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 19228070
    12873 1fwx:A (1.6) BS01 CA 1.7.2.4 GO:0004129 ... Q51705 11024061
    12874 1fwx:A (1.6) BS02 CA 1.7.2.4 GO:0004129 ... Q51705 11024061
    12875 1fwx:A (1.6) BS03 CUA 1.7.2.4 GO:0004129 ... Q51705 11024061
    12876 1fwx:B (1.6) BS01 CA 1.7.2.4 GO:0004129 ... Q51705 11024061
    12877 1fwx:B (1.6) BS02 CA 1.7.2.4 GO:0004129 ... Q51705 11024061
    12878 1fwx:B (1.6) BS03 CUA 1.7.2.4 GO:0004129 ... Q51705 11024061
    12879 1fwx:C (1.6) BS01 CA 1.7.2.4 GO:0004129 ... Q51705 11024061
    12880 1fwx:C (1.6) BS02 CA 1.7.2.4 GO:0004129 ... Q51705 11024061
    12881 1fwx:C (1.6) BS03 CA 1.7.2.4 GO:0004129 ... Q51705 11024061
    12882 1fwx:C (1.6) BS04 CUA 1.7.2.4 GO:0004129 ... Q51705 11024061
    12883 1fwx:D (1.6) BS01 CA 1.7.2.4 GO:0004129 ... Q51705 11024061
    12884 1fwx:D (1.6) BS02 CA 1.7.2.4 GO:0004129 ... Q51705 11024061
    12885 1fwx:D (1.6) BS03 CUA 1.7.2.4 GO:0004129 ... Q51705 11024061
    12886 1fwy:A (2.3) BS01 UD1 2.3.1.157
    2.7.7.23
    GO:0000287 ... P0ACC7 10428949
    12887 1fwy:B (2.3) BS01 UD1 2.3.1.157
    2.7.7.23
    GO:0000287 ... P0ACC7 10428949
    12888 1fwz:A (2.3) BS01 SO4 ? GO:0003677 ... P0DJL7 11320302
    12889 1fwz:A (2.3) BS02 ZN ? GO:0003677 ... P0DJL7 11320302
    12890 1fx1:A (2.0) BS01 FMN ? GO:0009055 ... P00323 N/A
    12891 1fx4:A (1.9) BS01 MG 4.6.1.1 GO:0009190 ... Q99280 11157750
    12892 1fx5:A (2.2) BS01 MN ? GO:0030246 ... P22972 11090284
    12893 1fx5:A (2.2) BS02 CA ? GO:0030246 ... P22972 11090284
    12894 1fx5:B (2.2) BS01 MN ? GO:0030246 ... P22972 11090284
    12895 1fx5:B (2.2) BS02 CA ? GO:0030246 ... P22972 11090284
    12896 1fx6:A (2.06) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 11115499
    12897 1fx6:B (2.06) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 11115499
    12898 1fx7:A (2.0) BS01 CO ? GO:0003677 ... P9WMH1 11053439
    12899 1fx7:A (2.0) BS02 CO ? GO:0003677 ... P9WMH1 11053439
    12900 1fx7:A (2.0) BS03 CO ? GO:0003677 ... P9WMH1 11053439
    12901 1fx7:B (2.0) BS01 CO ? GO:0003677 ... P9WMH1 11053439
    12902 1fx7:B (2.0) BS02 CO ? GO:0003677 ... P9WMH1 11053439
    12903 1fx7:B (2.0) BS03 CO ? GO:0003677 ... P9WMH1 11053439
    12904 1fx7:C (2.0) BS01 CO ? GO:0003677 ... P9WMH1 11053439
    12905 1fx7:C (2.0) BS02 CO ? GO:0003677 ... P9WMH1 11053439
    12906 1fx7:C (2.0) BS03 CO ? GO:0003677 ... P9WMH1 11053439
    12907 1fx7:D (2.0) BS01 CO ? GO:0003677 ... P9WMH1 11053439
    12908 1fx7:D (2.0) BS02 CO ? GO:0003677 ... P9WMH1 11053439
    12909 1fx7:D (2.0) BS03 CO ? GO:0003677 ... P9WMH1 11053439
    12910 1fx8:A (2.2) BS01 GOL ? GO:0005372 ... P0AER0 11039922
    12911 1fx8:A (2.2) BS02 GOL ? GO:0005372 ... P0AER0 11039922
    12912 1fx9:A (2.0) BS01 CA 3.1.1.4 GO:0002446 ... P00592 11170377
    12913 1fx9:A (2.0) BS02 SO4 3.1.1.4 GO:0002446 ... P00592 11170377
    12914 1fx9:A (2.0) BS03 MJI 3.1.1.4 GO:0002446 ... P00592 11170377
    12915 1fx9:B (2.0) BS01 MJI 3.1.1.4 GO:0002446 ... P00592 11170377
    12916 1fx9:B (2.0) BS02 CA 3.1.1.4 GO:0002446 ... P00592 11170377
    12917 1fx9:B (2.0) BS03 SO4 3.1.1.4 GO:0002446 ... P00592 11170377
    12918 1fx9:B (2.0) BS04 SO4 3.1.1.4 GO:0002446 ... P00592 11170377
    12919 1fxa:A (2.5) BS01 FES ? GO:0009055 ... P0A3C7 1902376
    12920 1fxa:B (2.5) BS01 FES ? GO:0009055 ... P0A3C7 1902376
    12921 1fxd:A (1.7) BS01 F3S ? GO:0005506 ... P00209 2056535
    12922 1fxf:A (1.85) BS01 CA 3.1.1.4 GO:0002446 ... P00592 11170377
    12923 1fxf:A (1.85) BS02 PO4 3.1.1.4 GO:0002446 ... P00592 11170377
    12924 1fxf:A (1.85) BS03 PO4 3.1.1.4 GO:0002446 ... P00592 11170377
    12925 1fxf:A (1.85) BS04 MJI 3.1.1.4 GO:0002446 ... P00592 11170377
    12926 1fxf:A (1.85) BS05 PO4 3.1.1.4 GO:0002446 ... P00592 11170377
    12927 1fxf:B (1.85) BS01 MJI 3.1.1.4 GO:0002446 ... P00592 11170377
    12928 1fxf:B (1.85) BS02 CA 3.1.1.4 GO:0002446 ... P00592 11170377
    12929 1fxf:B (1.85) BS03 PO4 3.1.1.4 GO:0002446 ... P00592 11170377
    12930 1fxf:B (1.85) BS04 PO4 3.1.1.4 GO:0002446 ... P00592 11170377
    12931 1fxf:B (1.85) BS05 PO4 3.1.1.4 GO:0002446 ... P00592 11170377
    12932 1fxh:A (1.97) BS01 PAC 3.5.1.11 GO:0016787 ... P06875 11239085
    12933 1fxh:B (1.97) BS01 CA 3.5.1.11 GO:0016787 ... P06875 11239085
    12934 1fxh:B (1.97) BS02 PAC 3.5.1.11 GO:0016787 ... P06875 11239085
    12935 1fxi:A (2.2) BS01 FES ? GO:0009055 ... P00250 2123937
    12936 1fxi:B (2.2) BS01 FES ? GO:0009055 ... P00250 2123937
    12937 1fxi:C (2.2) BS01 FES ? GO:0009055 ... P00250 2123937
    12938 1fxi:D (2.2) BS01 FES ? GO:0009055 ... P00250 2123937
    12939 1fxl:A (1.8) BS01 rna ? GO:0003676 ... P26378 11175903
    12940 1fxo:A (1.66) BS01 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    12941 1fxo:A (1.66) BS02 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    12942 1fxo:A (1.66) BS03 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    12943 1fxo:B (1.66) BS01 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    12944 1fxo:B (1.66) BS02 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    12945 1fxo:B (1.66) BS03 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    12946 1fxo:C (1.66) BS01 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    12947 1fxo:C (1.66) BS02 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    12948 1fxo:C (1.66) BS03 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    12949 1fxo:D (1.66) BS01 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    12950 1fxo:D (1.66) BS02 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    12951 1fxo:D (1.66) BS03 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    12952 1fxo:E (1.66) BS01 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    12953 1fxo:E (1.66) BS02 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    12954 1fxo:E (1.66) BS03 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    12955 1fxo:F (1.66) BS01 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    12956 1fxo:F (1.66) BS02 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    12957 1fxo:F (1.66) BS03 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    12958 1fxo:G (1.66) BS01 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    12959 1fxo:G (1.66) BS02 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    12960 1fxo:G (1.66) BS03 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    12961 1fxo:H (1.66) BS01 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    12962 1fxo:H (1.66) BS02 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    12963 1fxo:H (1.66) BS03 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    12964 1fxp:A (1.8) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 11115499
    12965 1fxp:B (1.8) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 11115499
    12966 1fxq:A (1.8) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 11115499
    12967 1fxq:A (1.8) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 11115499
    12968 1fxq:B (1.8) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 11115499
    12969 1fxq:B (1.8) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 11115499
    12970 1fxr:A (2.3) BS01 SF4 ? GO:0005506 ... P00210 7803404
    12971 1fxr:B (2.3) BS01 SO4 ? GO:0005506 ... P00210 7803404
    12972 1fxr:B (2.3) BS02 SF4 ? GO:0005506 ... P00210 7803404
    12973 1fxs:A (2.3) BS01 NAP 1.1.1.271 GO:0005737 ... P32055 9862812
    12974 1fxu:A (2.2) BS01 PO4 2.4.2.1 GO:0003824 ... P55859 11134924
    12975 1fxu:A (2.2) BS02 GU7 2.4.2.1 GO:0003824 ... P55859 11134924
    12976 1fxv:A (2.25) BS01 PNN 3.5.1.11 GO:0016787 ... P06875 11239085
    12977 1fxv:B (2.25) BS01 PNN 3.5.1.11 GO:0016787 ... P06875 11239085
    12978 1fxv:B (2.25) BS02 CA 3.5.1.11 GO:0016787 ... P06875 11239085
    12979 1fxw:A (2.1) BS01 CA 3.1.1.47 GO:0003847 ... Q29460 11522926
    12980 1fxy:A (2.15) BS01 0G6 3.4.21.4 GO:0004252 ... P07477 9707558
    12981 1fy4:A (0.81) BS01 peptide 3.4.21.4 GO:0004252 ... P35049 11134922
    12982 1fy5:A (0.81) BS01 peptide 3.4.21.4 GO:0004252 ... P35049 11134922
    12983 1fy6:A (1.89) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 11115499
    12984 1fy6:A (1.89) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 11115499
    12985 1fy6:B (1.89) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 11115499
    12986 1fy7:A (2.0) BS01 COA 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q08649 11106757
    12987 1fy8:E (1.7) BS01 CA 3.4.21.4 GO:0004252 ... P00763 11420435
    12988 1fyd:A (2.25) BS01 AMP 6.3.1.5 GO:0003952 ... P08164 11375500
    12989 1fyd:A (2.25) BS02 POP 6.3.1.5 GO:0003952 ... P08164 11375500
    12990 1fyf:A (1.65) BS01 ZN 6.1.1.3 GO:0000166 ... P0A8M3 11136973
    12991 1fyf:A (1.65) BS02 SSA 6.1.1.3 GO:0000166 ... P0A8M3 11136973
    12992 1fyf:B (1.65) BS01 ZN 6.1.1.3 GO:0000166 ... P0A8M3 11136973
    12993 1fyf:B (1.65) BS02 SSA 6.1.1.3 GO:0000166 ... P0A8M3 11136973
    12994 1fyk:A (2.5) BS01 dna ? GO:0003700 ... P22121 11599025
    12995 1fys:A (2.0) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 11513591
    12996 1fyt:A (2.6) BS01 peptide ? GO:0006955 ... P01903 11060013
    12997 1fyt:B (2.6) BS01 peptide ? GO:0006955 ... P01911 11060013
    12998 1fyu:A (2.6) BS01 GAL ? GO:0030246 ... P16404 11274466
    12999 1fyu:A (2.6) BS02 MN ? GO:0030246 ... P16404 11274466
    13000 1fyu:A (2.6) BS03 CA ? GO:0030246 ... P16404 11274466

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218