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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    9601 1efk:C (2.6) BS03 NAD 1.1.1.38 GO:0004470 ... P23368 10700286
    9602 1efk:C (2.6) BS04 MAK 1.1.1.38 GO:0004470 ... P23368 10700286
    9603 1efk:D (2.6) BS01 NAD 1.1.1.38 GO:0004470 ... P23368 10700286
    9604 1efk:D (2.6) BS02 MG 1.1.1.38 GO:0004470 ... P23368 10700286
    9605 1efk:D (2.6) BS03 NAD 1.1.1.38 GO:0004470 ... P23368 10700286
    9606 1efk:D (2.6) BS04 NAD 1.1.1.38 GO:0004470 ... P23368 10700286
    9607 1efk:D (2.6) BS05 MAK 1.1.1.38 GO:0004470 ... P23368 10700286
    9608 1efl:A (2.6) BS01 MG 1.1.1.38 GO:0004470 ... P23368 10700286
    9609 1efl:A (2.6) BS02 NAD 1.1.1.38 GO:0004470 ... P23368 10700286
    9610 1efl:A (2.6) BS03 NAD 1.1.1.38 GO:0004470 ... P23368 10700286
    9611 1efl:A (2.6) BS04 TTN 1.1.1.38 GO:0004470 ... P23368 10700286
    9612 1efl:B (2.6) BS01 MG 1.1.1.38 GO:0004470 ... P23368 10700286
    9613 1efl:B (2.6) BS02 NAD 1.1.1.38 GO:0004470 ... P23368 10700286
    9614 1efl:B (2.6) BS03 NAD 1.1.1.38 GO:0004470 ... P23368 10700286
    9615 1efl:B (2.6) BS04 TTN 1.1.1.38 GO:0004470 ... P23368 10700286
    9616 1efl:C (2.6) BS01 MG 1.1.1.38 GO:0004470 ... P23368 10700286
    9617 1efl:C (2.6) BS02 NAD 1.1.1.38 GO:0004470 ... P23368 10700286
    9618 1efl:C (2.6) BS03 NAD 1.1.1.38 GO:0004470 ... P23368 10700286
    9619 1efl:C (2.6) BS04 TTN 1.1.1.38 GO:0004470 ... P23368 10700286
    9620 1efl:D (2.6) BS01 MG 1.1.1.38 GO:0004470 ... P23368 10700286
    9621 1efl:D (2.6) BS02 NAD 1.1.1.38 GO:0004470 ... P23368 10700286
    9622 1efl:D (2.6) BS03 NAD 1.1.1.38 GO:0004470 ... P23368 10700286
    9623 1efl:D (2.6) BS04 TTN 1.1.1.38 GO:0004470 ... P23368 10700286
    9624 1efm:A (2.7) BS01 GDP ? GO:0003723 ... P0CE48 3898365
    9625 1efp:A (2.6) BS01 FAD ? GO:0009055 ... P38974 10026281
    9626 1efp:B (2.6) BS01 FAD ? GO:0009055 ... P38975 10026281
    9627 1efp:B (2.6) BS02 AMP ? GO:0009055 ... P38975 10026281
    9628 1efp:C (2.6) BS01 FAD ? GO:0009055 ... P38974 10026281
    9629 1efp:D (2.6) BS01 FAD ? GO:0009055 ... P38975 10026281
    9630 1efp:D (2.6) BS02 AMP ? GO:0009055 ... P38975 10026281
    9631 1efr:A (3.1) BS01 peptide 3.6.1.34 GO:0005515 ... P19483 8790345
    9632 1efr:A (3.1) BS02 ANP 3.6.1.34 GO:0005515 ... P19483 8790345
    9633 1efr:B (3.1) BS01 peptide 3.6.1.34 GO:0005515 ... P19483 8790345
    9634 1efr:B (3.1) BS02 ANP 3.6.1.34 GO:0005515 ... P19483 8790345
    9635 1efr:C (3.1) BS01 ANP 3.6.1.34 GO:0005515 ... P19483 8790345
    9636 1efr:D (3.1) BS01 ADP 7.1.2.2 GO:0005515 ... P00829 8790345
    9637 1efr:E (3.1) BS01 peptide 7.1.2.2 GO:0005515 ... P00829 8790345
    9638 1efr:F (3.1) BS01 ANP 7.1.2.2 GO:0005515 ... P00829 8790345
    9639 1efr:G (3.1) BS01 peptide 3.6.1.34 GO:0005515 ... P05631 8790345
    9640 1eft:A (2.5) BS01 MG ? GO:0003746 ... Q01698 8069622
    9641 1eft:A (2.5) BS02 GNP ? GO:0003746 ... Q01698 8069622
    9642 1efv:A (2.1) BS01 FAD ? GO:0005515 ... P13804 8962055
    9643 1efv:B (2.1) BS01 AMP ? GO:0005515 ... P38117 8962055
    9644 1efw:A (3.0) BS01 rna 6.1.1.12 GO:0000166 ... P36419 10843857
    9645 1efw:B (3.0) BS01 rna 6.1.1.12 GO:0000166 ... P36419 10843857
    9646 1efy:A (2.2) BS01 BZC 2.4.2.-
    2.4.2.30
    GO:0003950 ... P26446 11063605 MOAD: Ki=6nM
    PDBbind: -logKd/Ki=8.22, Ki=6nM
    9647 1efz:A (2.0) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 10413112
    9648 1efz:A (2.0) BS02 PRF 2.4.2.29 GO:0002099 ... P28720 10413112
    9649 1eg2:A (1.75) BS01 MTA 2.1.1.72 GO:0003676 ... P14751 11024175
    9650 1eg5:A (2.0) BS01 PLP 2.8.1.7 GO:0008483 ... Q9X218 10715213
    9651 1eg5:B (2.0) BS01 PLP 2.8.1.7 GO:0008483 ... Q9X218 10715213
    9652 1eg9:A (1.6) BS01 FE 1.14.12.12 GO:0005506 ... P0A110 10669618
    9653 1eg9:A (1.6) BS02 FES 1.14.12.12 GO:0005506 ... P0A110 10669618
    9654 1eg9:A (1.6) BS03 IND 1.14.12.12 GO:0005506 ... P0A110 10669618
    9655 1egc:A (2.6) BS01 CO8 1.3.8.7 GO:0001889 ... P11310 8823176
    9656 1egc:A (2.6) BS02 FAD 1.3.8.7 GO:0001889 ... P11310 8823176
    9657 1egc:A (2.6) BS03 FAD 1.3.8.7 GO:0001889 ... P11310 8823176
    9658 1egc:B (2.6) BS01 FAD 1.3.8.7 GO:0001889 ... P11310 8823176
    9659 1egc:B (2.6) BS02 CO8 1.3.8.7 GO:0001889 ... P11310 8823176
    9660 1egc:B (2.6) BS03 FAD 1.3.8.7 GO:0001889 ... P11310 8823176
    9661 1egc:C (2.6) BS01 CO8 1.3.8.7 GO:0001889 ... P11310 8823176
    9662 1egc:C (2.6) BS02 FAD 1.3.8.7 GO:0001889 ... P11310 8823176
    9663 1egc:C (2.6) BS03 FAD 1.3.8.7 GO:0001889 ... P11310 8823176
    9664 1egc:D (2.6) BS01 FAD 1.3.8.7 GO:0001889 ... P11310 8823176
    9665 1egc:D (2.6) BS02 CO8 1.3.8.7 GO:0001889 ... P11310 8823176
    9666 1egc:D (2.6) BS03 FAD 1.3.8.7 GO:0001889 ... P11310 8823176
    9667 1egd:A (2.4) BS01 FAD 1.3.8.7 GO:0001889 ... P11310 8823176
    9668 1egd:A (2.4) BS02 FAD 1.3.8.7 GO:0001889 ... P11310 8823176
    9669 1egd:B (2.4) BS01 FAD 1.3.8.7 GO:0001889 ... P11310 8823176
    9670 1egd:B (2.4) BS02 FAD 1.3.8.7 GO:0001889 ... P11310 8823176
    9671 1egd:C (2.4) BS01 FAD 1.3.8.7 GO:0001889 ... P11310 8823176
    9672 1egd:C (2.4) BS02 FAD 1.3.8.7 GO:0001889 ... P11310 8823176
    9673 1egd:D (2.4) BS01 FAD 1.3.8.7 GO:0001889 ... P11310 8823176
    9674 1egd:D (2.4) BS02 FAD 1.3.8.7 GO:0001889 ... P11310 8823176
    9675 1ege:A (2.75) BS01 FAD 1.3.8.7 GO:0001889 ... P11310 8823176
    9676 1ege:A (2.75) BS02 FAD 1.3.8.7 GO:0001889 ... P11310 8823176
    9677 1ege:B (2.75) BS01 FAD 1.3.8.7 GO:0001889 ... P11310 8823176
    9678 1ege:B (2.75) BS02 FAD 1.3.8.7 GO:0001889 ... P11310 8823176
    9679 1ege:C (2.75) BS01 FAD 1.3.8.7 GO:0001889 ... P11310 8823176
    9680 1ege:C (2.75) BS02 FAD 1.3.8.7 GO:0001889 ... P11310 8823176
    9681 1ege:D (2.75) BS01 FAD 1.3.8.7 GO:0001889 ... P11310 8823176
    9682 1ege:D (2.75) BS02 FAD 1.3.8.7 GO:0001889 ... P11310 8823176
    9683 1egh:A (2.0) BS01 PGA 4.2.3.3 GO:0005737 ... P0A731 10715115 MOAD: Ki=2uM
    PDBbind: -logKd/Ki=5.70, Ki=2uM
    9684 1egh:B (2.0) BS01 PGA 4.2.3.3 GO:0005737 ... P0A731 10715115 MOAD: Ki=2uM
    9685 1egh:C (2.0) BS01 PGA 4.2.3.3 GO:0005737 ... P0A731 10715115 MOAD: Ki=2uM
    9686 1egh:D (2.0) BS01 PGA 4.2.3.3 GO:0005737 ... P0A731 10715115 MOAD: Ki=2uM
    9687 1egh:E (2.0) BS01 PGA 4.2.3.3 GO:0005737 ... P0A731 10715115 MOAD: Ki=2uM
    9688 1egh:F (2.0) BS01 PGA 4.2.3.3 GO:0005737 ... P0A731 10715115 MOAD: Ki=2uM
    PDBbind: -logKd/Ki=5.70, Ki=2uM
    9689 1egm:A (1.85) BS01 CNC 4.2.1.28 GO:0003824 ... Q59470 10903944
    9690 1egm:B (1.85) BS01 CNC 4.2.1.28 GO:0016829 ... Q59471 10903944
    9691 1egm:E (1.85) BS01 CNC 4.2.1.28 GO:0016829 ... Q59471 10903944
    9692 1egm:L (1.85) BS01 CNC 4.2.1.28 GO:0003824 ... Q59470 10903944
    9693 1egn:A (1.6) BS01 CO 3.2.1.91 GO:0004553 ... P62694 11336632
    9694 1egn:A (1.6) BS02 CO 3.2.1.91 GO:0004553 ... P62694 11336632
    9695 1egp:A (2.0) BS01 peptide ? GO:0004867 ... P01051 8425603
    9696 1egq:A (1.55) BS01 CA 3.4.21.64 GO:0004252 ... P06873 11438752
    9697 1egq:A (1.55) BS02 CA 3.4.21.64 GO:0004252 ... P06873 11438752
    9698 1egu:A (1.56) BS01 SO4 4.2.2.1 GO:0003824 ... Q54873 10716923
    9699 1egv:A (1.75) BS01 COY 4.2.1.28 GO:0003824 ... Q59470 10903944
    9700 1egv:B (1.75) BS01 COY 4.2.1.28 GO:0016829 ... Q59471 10903944
    9701 1egv:E (1.75) BS01 COY 4.2.1.28 GO:0016829 ... Q59471 10903944
    9702 1egv:L (1.75) BS01 COY 4.2.1.28 GO:0003824 ... Q59470 10903944
    9703 1egw:A (1.5) BS01 dna ? GO:0000977 ... Q02078 10715212
    9704 1egw:A (1.5) BS02 dna ? GO:0000977 ... Q02078 10715212
    9705 1egw:B (1.5) BS01 dna ? GO:0000977 ... Q02078 10715212
    9706 1egw:B (1.5) BS02 dna ? GO:0000977 ... Q02078 10715212
    9707 1egw:B (1.5) BS03 dna ? GO:0000977 ... Q02078 10715212
    9708 1egw:C (1.5) BS01 dna ? GO:0000977 ... Q02078 10715212
    9709 1egw:C (1.5) BS02 dna ? GO:0000977 ... Q02078 10715212
    9710 1egw:C (1.5) BS03 dna ? GO:0000977 ... Q02078 10715212
    9711 1egw:D (1.5) BS01 dna ? GO:0000977 ... Q02078 10715212
    9712 1egw:D (1.5) BS02 dna ? GO:0000977 ... Q02078 10715212
    9713 1egy:A (2.35) BS01 HEM 1.14.15.35 GO:0004497 ... Q00441 10716705
    9714 1egy:A (2.35) BS02 9AP 1.14.15.35 GO:0004497 ... Q00441 10716705
    9715 1egy:A (2.35) BS03 9AP 1.14.15.35 GO:0004497 ... Q00441 10716705
    9716 1egz:A (2.3) BS01 CA 3.2.1.4 GO:0000272 ... P07103 11501995
    9717 1egz:B (2.3) BS01 CA 3.2.1.4 GO:0000272 ... P07103 11501995
    9718 1egz:C (2.3) BS01 CA 3.2.1.4 GO:0000272 ... P07103 11501995
    9719 1eh2:A (-1.00) BS01 CA ? GO:0005509 ... P42566 9721102
    9720 1eh3:A (2.0) BS01 FE 3.4.21.- GO:0005576 ... P02788 10828980
    9721 1eh3:A (2.0) BS02 CO3 3.4.21.- GO:0005576 ... P02788 10828980
    9722 1eh4:A (2.8) BS01 IC1 2.7.11.1 GO:0004672 ... P40233 10749871
    9723 1eh4:B (2.8) BS01 IC1 2.7.11.1 GO:0004672 ... P40233 10749871
    9724 1eh6:A (2.0) BS01 ZN 2.1.1.63 GO:0003677 ... P16455 10747039
    9725 1eh7:A (2.0) BS01 ZN 2.1.1.63 GO:0003677 ... P16455 10747039
    9726 1eh8:A (2.5) BS01 ZN 2.1.1.63 GO:0003677 ... P16455 10747039
    9727 1ehb:A (1.9) BS01 HEM ? GO:0020037 ... P00171 10842340
    9728 1ehe:A (1.7) BS01 HEM 1.7.1.14 GO:0004497 ... P23295 11051564
    9729 1ehf:A (1.7) BS01 HEM 1.7.1.14 GO:0004497 ... P23295 11051564
    9730 1ehg:A (1.7) BS01 HEM 1.7.1.14 GO:0004497 ... P23295 11051564
    9731 1ehi:A (2.38) BS01 MG 6.3.2.4 GO:0003824 ... Q03ZI1 10801495
    9732 1ehi:A (2.38) BS02 ADP 6.3.2.4 GO:0003824 ... Q03ZI1 10801495
    9733 1ehi:A (2.38) BS03 PHY 6.3.2.4 GO:0003824 ... Q03ZI1 10801495
    9734 1ehj:A (-1.00) BS01 HEC ? GO:0009055 ... P00137 10561607
    9735 1ehj:A (-1.00) BS02 HEC ? GO:0009055 ... P00137 10561607
    9736 1ehj:A (-1.00) BS03 HEC ? GO:0009055 ... P00137 10561607
    9737 1ehk:A (2.4) BS01 CU 7.1.1.9 GO:0004129 ... Q5SJ79 10775261
    9738 1ehk:A (2.4) BS02 HEM 7.1.1.9 GO:0004129 ... Q5SJ79 10775261
    9739 1ehk:A (2.4) BS03 HAS 7.1.1.9 GO:0004129 ... Q5SJ79 10775261
    9740 1ehk:B (2.4) BS01 CUA 7.1.1.9 GO:0004129 ... Q5SJ80 10775261
    9741 1ehl:L (2.4) BS01 dna ? GO:0005576 ... P01837 10835279
    9742 1ei1:A (2.3) BS01 ANP 5.6.2.2 GO:0003677 ... P0AES6 10734094
    9743 1ei1:B (2.3) BS01 ANP 5.6.2.2 GO:0003677 ... P0AES6 10734094
    9744 1ei6:A (2.1) BS01 ZN 3.11.1.2 GO:0016787 ... Q51782 N/A
    9745 1ei6:A (2.1) BS02 ZN 3.11.1.2 GO:0016787 ... Q51782 N/A
    9746 1ei6:A (2.1) BS03 PPF 3.11.1.2 GO:0016787 ... Q51782 N/A
    9747 1ei6:B (2.1) BS01 ZN 3.11.1.2 GO:0016787 ... Q51782 N/A
    9748 1ei6:B (2.1) BS02 ZN 3.11.1.2 GO:0016787 ... Q51782 N/A
    9749 1ei6:C (2.1) BS01 ZN 3.11.1.2 GO:0016787 ... Q51782 N/A
    9750 1ei6:C (2.1) BS02 ZN 3.11.1.2 GO:0016787 ... Q51782 N/A
    9751 1ei6:C (2.1) BS03 PPF 3.11.1.2 GO:0016787 ... Q51782 N/A
    9752 1ei6:D (2.1) BS01 ZN 3.11.1.2 GO:0016787 ... Q51782 N/A
    9753 1ei6:D (2.1) BS02 ZN 3.11.1.2 GO:0016787 ... Q51782 N/A
    9754 1ei6:D (2.1) BS03 PPF 3.11.1.2 GO:0016787 ... Q51782 N/A
    9755 1eii:A (-1.00) BS01 RTL ? GO:0005504 ... P06768 10884357
    9756 1eil:A (2.0) BS01 FE 1.13.11.39 GO:0003824 ... P17297 11293547
    9757 1eio:A (-1.00) BS01 GCH ? GO:0005504 ... P10289 10806391
    9758 1eiq:A (2.0) BS01 FE 1.13.11.39 GO:0003824 ... P17297 11293547
    9759 1eir:A (2.0) BS01 FE 1.13.11.39 GO:0003824 ... P17297 11293547
    9760 1eir:A (2.0) BS02 BPY 1.13.11.39 GO:0003824 ... P17297 11293547
    9761 1eix:A (2.5) BS01 BMQ 4.1.1.23 GO:0004590 ... P08244 10757968 MOAD: Ki=8.8pM
    PDBbind: -logKd/Ki=11.06, Ki=8.8pM
    9762 1eix:A (2.5) BS02 BMQ 4.1.1.23 GO:0004590 ... P08244 10757968 MOAD: Ki=8.8pM
    PDBbind: -logKd/Ki=11.06, Ki=8.8pM
    9763 1eix:B (2.5) BS01 BMQ 4.1.1.23 GO:0004590 ... P08244 10757968 MOAD: Ki=8.8pM
    PDBbind: -logKd/Ki=11.06, Ki=8.8pM
    9764 1eix:B (2.5) BS02 BMQ 4.1.1.23 GO:0004590 ... P08244 10757968 MOAD: Ki=8.8pM
    PDBbind: -logKd/Ki=11.06, Ki=8.8pM
    9765 1eix:C (2.5) BS01 BMQ 4.1.1.23 GO:0004590 ... P08244 10757968 MOAD: Ki=8.8pM
    9766 1eix:C (2.5) BS02 BMQ 4.1.1.23 GO:0004590 ... P08244 10757968 MOAD: Ki=8.8pM
    9767 1eix:D (2.5) BS01 BMQ 4.1.1.23 GO:0004590 ... P08244 10757968 MOAD: Ki=8.8pM
    9768 1eix:D (2.5) BS02 BMQ 4.1.1.23 GO:0004590 ... P08244 10757968 MOAD: Ki=8.8pM
    9769 1eiy:A (3.3) BS01 rna 6.1.1.20 GO:0000049 ... Q5SGX2 9016717
    9770 1eiy:B (3.3) BS01 rna 6.1.1.20 GO:0000049 ... Q5SGX1 9016717
    9771 1eiz:A (1.7) BS01 SAM 2.1.1.166 GO:0001510 ... P0C0R7 10983982
    9772 1ej0:A (1.5) BS01 SAM 2.1.1.166 GO:0001510 ... P0C0R7 10983982
    9773 1ej1:A (2.2) BS01 M7G ? GO:0003723 ... P63073 9200613
    9774 1ej1:B (2.2) BS01 M7G ? GO:0003723 ... P63073 9200613
    9775 1ej2:A (1.9) BS01 SO4 2.7.7.1 GO:0000309 ... O26253 11063748
    9776 1ej2:A (1.9) BS02 NAD 2.7.7.1 GO:0000309 ... O26253 11063748
    9777 1ej3:A (2.3) BS01 CZH ? GO:0005509 ... P02592 10830969
    9778 1ej3:B (2.3) BS01 CZH ? GO:0005509 ... P02592 10830969
    9779 1ej4:A (2.25) BS01 peptide ? GO:0003723 ... P63073 10394359
    9780 1ej4:A (2.25) BS02 M7G ? GO:0003723 ... P63073 10394359
    9781 1ej6:C (3.6) BS01 ZN 3.6.4.13 GO:0003724 ... P15024 10801118
    9782 1ej7:L (2.45) BS01 PO4 4.1.1.39 GO:0000287 ... P00876 10801357
    9783 1ej7:L (2.45) BS02 PO4 4.1.1.39 GO:0000287 ... P00876 10801357
    9784 1ej8:A (1.55) BS01 CA ? GO:0006801 ... P40202 10736160
    9785 1ej9:A (2.6) BS01 dna 5.6.2.1 GO:0003677 ... P11387 10841763
    9786 1ej9:A (2.6) BS02 dna 5.6.2.1 GO:0003677 ... P11387 10841763
    9787 1eja:A (2.7) BS01 NA 3.4.21.4 GO:0004252 ... P00761 10771427
    9788 1ejb:A (1.85) BS01 INJ 2.5.1.78 GO:0000906 ... P50861 10860731
    9789 1ejb:A (1.85) BS02 INJ 2.5.1.78 GO:0000906 ... P50861 10860731
    9790 1ejb:B (1.85) BS01 INJ 2.5.1.78 GO:0000906 ... P50861 10860731
    9791 1ejb:B (1.85) BS02 INJ 2.5.1.78 GO:0000906 ... P50861 10860731
    9792 1ejb:C (1.85) BS01 INJ 2.5.1.78 GO:0000906 ... P50861 10860731
    9793 1ejb:C (1.85) BS02 INJ 2.5.1.78 GO:0000906 ... P50861 10860731
    9794 1ejb:D (1.85) BS01 INJ 2.5.1.78 GO:0000906 ... P50861 10860731
    9795 1ejb:D (1.85) BS02 INJ 2.5.1.78 GO:0000906 ... P50861 10860731
    9796 1ejb:E (1.85) BS01 INJ 2.5.1.78 GO:0000906 ... P50861 10860731
    9797 1ejb:E (1.85) BS02 INJ 2.5.1.78 GO:0000906 ... P50861 10860731
    9798 1eje:A (2.2) BS01 FMN ? GO:0010181 ... O26255 11017201
    9799 1ejh:A (2.2) BS01 peptide ? GO:0003723 ... P63073 10394359
    9800 1ejh:A (2.2) BS02 M7G ? GO:0003723 ... P63073 10394359

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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