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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    816401 9b9m:D (2.07) BS01 FE2 N/A GO:0016491 ... A0A0C7AN42 39220707
    816402 9b9n:A (2.28) BS01 A1AL2 N/A GO:0016491 ... A0A0C7AN42 39220707
    816403 9b9n:A (2.28) BS02 FE N/A GO:0016491 ... A0A0C7AN42 39220707
    816404 9b9n:B (2.28) BS01 A1AL2 N/A GO:0016491 ... A0A0C7AN42 39220707
    816405 9b9n:B (2.28) BS02 FE N/A GO:0016491 ... A0A0C7AN42 39220707
    816406 9b9o:A (2.16) BS01 FE2 N/A GO:0016491 ... A0A0C7AN42 39220707
    816407 9b9o:A (2.16) BS02 A1AL2 N/A GO:0016491 ... A0A0C7AN42 39220707
    816408 9b9o:B (2.16) BS01 FE2 N/A GO:0016491 ... A0A0C7AN42 39220707
    816409 9b9o:B (2.16) BS02 A1AL2 N/A GO:0016491 ... A0A0C7AN42 39220707
    816410 9bap:A (2.88) BS01 SAH N/A GO:0003677 ... Q96W73 N/A
    816411 9bap:A (2.88) BS02 ZN N/A GO:0003677 ... Q96W73 N/A
    816412 9bbb:A (2.5) BS01 HEM N/A GO:0002933 ... P08684 N/A
    816413 9bbb:A (2.5) BS02 A1APA N/A GO:0002933 ... P08684 N/A
    816414 9bbe:A (2.0) BS01 A1AK9 ? GO:0000781 ... Q16531 N/A
    816415 9bbg:A (1.7) BS01 A1ALA ? GO:0000781 ... Q16531 N/A
    816416 9bbh:A (2.0) BS01 VVP ? GO:0000781 ... Q16531 N/A
    816417 9bbh:A (2.0) BS02 VVP ? GO:0000781 ... Q16531 N/A
    816418 9bbi:A (1.9) BS01 A1ALB ? GO:0000781 ... Q16531 N/A
    816419 9bc2:A (2.75) BS01 peptide N/A GO:0000785 ... P21980 38959038
    816420 9bc3:A (2.52) BS01 peptide N/A GO:0000785 ... P21980 38959038
    816421 9bc3:A (2.52) BS02 CA N/A GO:0000785 ... P21980 38959038
    816422 9bc3:A (2.52) BS03 CA N/A GO:0000785 ... P21980 38959038
    816423 9bc3:B (2.52) BS01 peptide N/A GO:0000785 ... P21980 38959038
    816424 9bc3:B (2.52) BS02 CA N/A GO:0000785 ... P21980 38959038
    816425 9bc3:B (2.52) BS03 CA N/A GO:0000785 ... P21980 38959038
    816426 9bc4:A (1.84) BS01 peptide N/A GO:0000785 ... P21980 38959038
    816427 9bc4:A (1.84) BS02 CA N/A GO:0000785 ... P21980 38959038
    816428 9bc4:A (1.84) BS03 CA N/A GO:0000785 ... P21980 38959038
    816429 9bcb:A (1.45) BS01 A1ALJ ? GO:0005501 ... P82980 N/A
    816430 9bct:A (2.5) BS01 dna N/A GO:0000287 ... Q5JE33 N/A
    816431 9bct:A (2.5) BS02 dna N/A GO:0000287 ... Q5JE33 N/A
    816432 9bct:A (2.5) BS03 rna N/A GO:0000287 ... Q5JE33 N/A
    816433 9bct:A (2.5) BS04 MG N/A GO:0000287 ... Q5JE33 N/A
    816434 9bct:A (2.5) BS05 ZN N/A GO:0000287 ... Q5JE33 N/A
    816435 9bct:A (2.5) BS06 ZN N/A GO:0000287 ... Q5JE33 N/A
    816436 9bct:B (2.5) BS01 dna N/A GO:0000428 ... Q5JE32 N/A
    816437 9bct:B (2.5) BS02 dna N/A GO:0000428 ... Q5JE32 N/A
    816438 9bct:B (2.5) BS03 rna N/A GO:0000428 ... Q5JE32 N/A
    816439 9bct:B (2.5) BS04 ZN N/A GO:0000428 ... Q5JE32 N/A
    816440 9bct:C (2.5) BS01 dna N/A GO:0000428 ... Q5JE34 N/A
    816441 9bct:C (2.5) BS02 dna N/A GO:0000428 ... Q5JE34 N/A
    816442 9bct:E (2.5) BS01 rna N/A GO:0000428 ... Q5JIY4 N/A
    816443 9bct:I (2.5) BS01 ZN N/A GO:0000428 ... Q5JIY5 N/A
    816444 9bct:J (2.5) BS01 rna N/A GO:0003677 ... Q5JH24 N/A
    816445 9bct:J (2.5) BS02 ZN N/A GO:0003677 ... Q5JH24 N/A
    816446 9bct:M (2.5) BS01 rna N/A GO:0003677 ... Q5JH24 N/A
    816447 9bct:M (2.5) BS02 ZN N/A GO:0003677 ... Q5JH24 N/A
    816448 9bct:N (2.5) BS01 ZN N/A GO:0000428 ... Q5JJC9 N/A
    816449 9bct:P (2.5) BS01 ZN N/A GO:0000428 ... Q5JDM8 N/A
    816450 9bcu:A (2.2) BS01 dna N/A GO:0000287 ... Q5JE33 N/A
    816451 9bcu:A (2.2) BS02 dna N/A GO:0000287 ... Q5JE33 N/A
    816452 9bcu:A (2.2) BS03 rna N/A GO:0000287 ... Q5JE33 N/A
    816453 9bcu:A (2.2) BS04 MG N/A GO:0000287 ... Q5JE33 N/A
    816454 9bcu:A (2.2) BS05 ZN N/A GO:0000287 ... Q5JE33 N/A
    816455 9bcu:A (2.2) BS06 ZN N/A GO:0000287 ... Q5JE33 N/A
    816456 9bcu:B (2.2) BS01 dna N/A GO:0000428 ... Q5JE32 N/A
    816457 9bcu:B (2.2) BS02 dna N/A GO:0000428 ... Q5JE32 N/A
    816458 9bcu:B (2.2) BS03 rna N/A GO:0000428 ... Q5JE32 N/A
    816459 9bcu:B (2.2) BS04 ZN N/A GO:0000428 ... Q5JE32 N/A
    816460 9bcu:C (2.2) BS01 dna N/A GO:0000428 ... Q5JE34 N/A
    816461 9bcu:E (2.2) BS01 rna N/A GO:0000428 ... Q5JIY4 N/A
    816462 9bcu:J (2.2) BS01 rna N/A GO:0003677 ... Q5JH24 N/A
    816463 9bcu:J (2.2) BS02 ZN N/A GO:0003677 ... Q5JH24 N/A
    816464 9bcu:M (2.2) BS01 rna N/A GO:0003677 ... Q5JH24 N/A
    816465 9bcu:M (2.2) BS02 ZN N/A GO:0003677 ... Q5JH24 N/A
    816466 9bcu:N (2.2) BS01 ZN N/A GO:0000428 ... Q5JJC9 N/A
    816467 9bcu:P (2.2) BS01 ZN N/A GO:0000428 ... Q5JDM8 N/A
    816468 9bcz:A (1.99) BS01 CA 3.1.4.11 GO:0004435 ... Q2VRL0 N/A
    816469 9bdl:AL02 (2.8) BS01 rna N/A GO:0002181 ... G1TT27 38718836
    816470 9bdl:AL02 (2.8) BS02 rna N/A GO:0002181 ... G1TT27 38718836
    816471 9bdl:AL03 (2.8) BS01 rna N/A GO:0003723 ... G1TL06 38718836
    816472 9bdl:AL04 (2.8) BS01 rna N/A GO:0003723 ... A0A5F9DCT1 38718836
    816473 9bdl:AL04 (2.8) BS02 rna N/A GO:0003723 ... A0A5F9DCT1 38718836
    816474 9bdl:AL05 (2.8) BS01 rna N/A GO:0000027 ... P19949 38718836
    816475 9bdl:AL05 (2.8) BS02 rna N/A GO:0000027 ... P19949 38718836
    816476 9bdl:AL07 (2.8) BS01 rna N/A GO:0000463 ... G1SV32 38718836
    816477 9bdl:AL07 (2.8) BS02 rna N/A GO:0000463 ... G1SV32 38718836
    816478 9bdl:AL09 (2.8) BS01 rna N/A GO:0002181 ... G1SWI6 38718836
    816479 9bdl:AL10 (2.8) BS01 rna N/A GO:0000027 ... B7NZQ2 38718836
    816480 9bdl:AL10 (2.8) BS02 rna N/A GO:0000027 ... B7NZQ2 38718836
    816481 9bdl:AL10 (2.8) BS03 rna N/A GO:0000027 ... B7NZQ2 38718836
    816482 9bdl:AL11 (2.8) BS01 rna N/A GO:0003723 ... G1TUB8 38718836
    816483 9bdl:AL11 (2.8) BS02 rna N/A GO:0003723 ... G1TUB8 38718836
    816484 9bdl:AL11 (2.8) BS03 rna N/A GO:0003723 ... G1TUB8 38718836
    816485 9bdl:AL13 (2.8) BS01 rna N/A GO:0003723 ... G1TKB3 38718836
    816486 9bdl:AL13 (2.8) BS02 rna N/A GO:0003723 ... G1TKB3 38718836
    816487 9bdl:AL15 (2.8) BS01 rna N/A GO:0002181 ... G1T0C1 38718836
    816488 9bdl:AL15 (2.8) BS02 rna N/A GO:0002181 ... G1T0C1 38718836
    816489 9bdl:AL16 (2.8) BS01 rna N/A GO:0003729 ... G1TVS8 38718836
    816490 9bdl:AL18 (2.8) BS01 rna N/A GO:0002181 ... G1TFE0 38718836
    816491 9bdl:AL19 (2.8) BS01 rna N/A GO:0003723 ... G1TYL6 38718836
    816492 9bdl:AL19 (2.8) BS02 rna N/A GO:0003723 ... G1TYL6 38718836
    816493 9bdl:AL21 (2.8) BS01 rna N/A GO:0003735 ... G1SHQ2 38718836
    816494 9bdl:AL21 (2.8) BS02 rna N/A GO:0003735 ... G1SHQ2 38718836
    816495 9bdl:AL23 (2.8) BS01 rna N/A GO:0000122 ... G1T6D1 38718836
    816496 9bdl:AL26 (2.8) BS01 rna N/A GO:0002181 ... G1SQH0 38718836
    816497 9bdl:AL26 (2.8) BS02 rna N/A GO:0002181 ... G1SQH0 38718836
    816498 9bdl:AL27 (2.8) BS01 rna N/A GO:0003735 ... G1TXF6 38718836
    816499 9bdl:AL28 (2.8) BS01 rna N/A GO:0003735 ... G1SNY0 38718836
    816500 9bdl:AL29 (2.8) BS01 rna N/A GO:0002181 ... G1SGR6 38718836
    816501 9bdl:AL32 (2.8) BS01 rna N/A GO:0005737 ... G1TUN8 38718836
    816502 9bdl:AL33 (2.8) BS01 rna N/A GO:0000049 ... G1SF08 38718836
    816503 9bdl:AL34 (2.8) BS01 rna N/A GO:0003735 ... G1TXG5 38718836
    816504 9bdl:AL35 (2.8) BS01 rna N/A GO:0000463 ... G1SIT5 38718836
    816505 9bdl:AL35 (2.8) BS02 rna N/A GO:0000463 ... G1SIT5 38718836
    816506 9bdl:AL36 (2.8) BS01 rna N/A GO:0002181 ... G1TTQ5 38718836
    816507 9bdl:AL38 (2.8) BS01 rna N/A GO:0003735 ... G1U001 38718836
    816508 9bdl:AL39 (2.8) BS01 rna N/A GO:0005840 ... G1TTN1 38718836
    816509 9bdl:AL39 (2.8) BS02 rna N/A GO:0005840 ... G1TTN1 38718836
    816510 9bdl:AL43 (2.8) BS01 rna N/A GO:0005737 ... G1SY53 38718836
    816511 9bdl:ALNW (2.8) BS01 rna N/A GO:0005737 ... G1U7L1 38718836
    816512 9bdl:ARAC (2.8) BS01 rna N/A GO:0001891 ... G1SJB4 38718836
    816513 9bdl:AS03 (2.8) BS01 rna N/A GO:0003677 ... G1TNM3 38718836
    816514 9bdl:AS04 (2.8) BS01 rna N/A GO:0003723 ... G1TA47 38718836
    816515 9bdl:AS05 (2.8) BS01 rna N/A GO:0000028 ... G1TFM5 38718836
    816516 9bdl:AS06 (2.8) BS01 rna N/A GO:0000082 ... G1TM55 38718836
    816517 9bdl:AS07 (2.8) BS01 rna N/A GO:0003735 ... G1SVB0 38718836
    816518 9bdl:AS08 (2.8) BS01 rna N/A GO:0000462 ... G1TJW1 38718836
    816519 9bdl:AS08 (2.8) BS02 rna N/A GO:0000462 ... G1TJW1 38718836
    816520 9bdl:AS09 (2.8) BS01 rna N/A GO:0003735 ... B7NZS8 38718836
    816521 9bdl:AS11 (2.8) BS01 rna N/A GO:0003735 ... G1TRM4 38718836
    816522 9bdl:AS13 (2.8) BS01 rna N/A GO:0003735 ... G1SP51 38718836
    816523 9bdl:AS13 (2.8) BS02 rna N/A GO:0003735 ... G1SP51 38718836
    816524 9bdl:AS16 (2.8) BS01 rna N/A GO:0000462 ... G1SGX4 38718836
    816525 9bdl:AS17 (2.8) BS01 rna N/A GO:0003735 ... G1TU13 38718836
    816526 9bdl:AS18 (2.8) BS01 rna N/A GO:0003735 ... G1TPG3 38718836
    816527 9bdl:AS19 (2.8) BS01 rna N/A GO:0000028 ... G1TN62 38718836
    816528 9bdl:AS22 (2.8) BS01 rna N/A GO:0003735 ... G1TG89 38718836
    816529 9bdl:AS23 (2.8) BS01 rna N/A GO:0003735 ... G1SZ47 38718836
    816530 9bdl:AS24 (2.8) BS01 rna N/A GO:0005840 ... G1T3D8 38718836
    816531 9bdl:AS27 (2.8) BS01 rna N/A GO:0000028 ... G1TZ76 38718836
    816532 9bdl:AS28 (2.8) BS01 rna N/A GO:0000028 ... G1TIB4 38718836
    816533 9bdl:AS29 (2.8) BS01 rna N/A GO:0003735 ... G1U7M4 38718836
    816534 9bdn:AL02 (3.1) BS01 rna N/A GO:0002181 ... G1TT27 38718836
    816535 9bdn:AL02 (3.1) BS02 rna N/A GO:0002181 ... G1TT27 38718836
    816536 9bdn:AL03 (3.1) BS01 rna N/A GO:0003723 ... G1TL06 38718836
    816537 9bdn:AL04 (3.1) BS01 rna N/A GO:0003723 ... A0A5F9DCT1 38718836
    816538 9bdn:AL04 (3.1) BS02 rna N/A GO:0003723 ... A0A5F9DCT1 38718836
    816539 9bdn:AL05 (3.1) BS01 rna N/A GO:0000027 ... P19949 38718836
    816540 9bdn:AL05 (3.1) BS02 rna N/A GO:0000027 ... P19949 38718836
    816541 9bdn:AL07 (3.1) BS01 rna N/A GO:0000463 ... G1SV32 38718836
    816542 9bdn:AL07 (3.1) BS02 rna N/A GO:0000463 ... G1SV32 38718836
    816543 9bdn:AL09 (3.1) BS01 rna N/A GO:0002181 ... G1SWI6 38718836
    816544 9bdn:AL10 (3.1) BS01 rna N/A GO:0000027 ... B7NZQ2 38718836
    816545 9bdn:AL10 (3.1) BS02 rna N/A GO:0000027 ... B7NZQ2 38718836
    816546 9bdn:AL10 (3.1) BS03 rna N/A GO:0000027 ... B7NZQ2 38718836
    816547 9bdn:AL11 (3.1) BS01 rna N/A GO:0003723 ... G1TUB8 38718836
    816548 9bdn:AL11 (3.1) BS02 rna N/A GO:0003723 ... G1TUB8 38718836
    816549 9bdn:AL11 (3.1) BS03 rna N/A GO:0003723 ... G1TUB8 38718836
    816550 9bdn:AL12 (3.1) BS01 rna N/A GO:0003723 ... G1SMR7 38718836
    816551 9bdn:AL13 (3.1) BS01 rna N/A GO:0003723 ... G1TKB3 38718836
    816552 9bdn:AL13 (3.1) BS02 rna N/A GO:0003723 ... G1TKB3 38718836
    816553 9bdn:AL15 (3.1) BS01 rna N/A GO:0002181 ... G1T0C1 38718836
    816554 9bdn:AL15 (3.1) BS02 rna N/A GO:0002181 ... G1T0C1 38718836
    816555 9bdn:AL16 (3.1) BS01 rna N/A GO:0003729 ... G1TVS8 38718836
    816556 9bdn:AL18 (3.1) BS01 rna N/A GO:0002181 ... G1TFE0 38718836
    816557 9bdn:AL19 (3.1) BS01 rna N/A GO:0003723 ... G1TYL6 38718836
    816558 9bdn:AL19 (3.1) BS02 rna N/A GO:0003723 ... G1TYL6 38718836
    816559 9bdn:AL21 (3.1) BS01 rna N/A GO:0003735 ... G1SHQ2 38718836
    816560 9bdn:AL21 (3.1) BS02 rna N/A GO:0003735 ... G1SHQ2 38718836
    816561 9bdn:AL23 (3.1) BS01 rna N/A GO:0000122 ... G1T6D1 38718836
    816562 9bdn:AL26 (3.1) BS01 rna N/A GO:0002181 ... G1SQH0 38718836
    816563 9bdn:AL26 (3.1) BS02 rna N/A GO:0002181 ... G1SQH0 38718836
    816564 9bdn:AL27 (3.1) BS01 rna N/A GO:0003735 ... G1TXF6 38718836
    816565 9bdn:AL28 (3.1) BS01 rna N/A GO:0003735 ... G1SNY0 38718836
    816566 9bdn:AL29 (3.1) BS01 rna N/A GO:0002181 ... G1SGR6 38718836
    816567 9bdn:AL32 (3.1) BS01 rna N/A GO:0005737 ... G1TUN8 38718836
    816568 9bdn:AL33 (3.1) BS01 rna N/A GO:0000049 ... G1SF08 38718836
    816569 9bdn:AL34 (3.1) BS01 rna N/A GO:0003735 ... G1TXG5 38718836
    816570 9bdn:AL35 (3.1) BS01 rna N/A GO:0000463 ... G1SIT5 38718836
    816571 9bdn:AL35 (3.1) BS02 rna N/A GO:0000463 ... G1SIT5 38718836
    816572 9bdn:AL36 (3.1) BS01 rna N/A GO:0002181 ... G1TTQ5 38718836
    816573 9bdn:AL38 (3.1) BS01 rna N/A GO:0003735 ... G1U001 38718836
    816574 9bdn:AL39 (3.1) BS01 rna N/A GO:0005840 ... G1TTN1 38718836
    816575 9bdn:AL39 (3.1) BS02 rna N/A GO:0005840 ... G1TTN1 38718836
    816576 9bdn:AL43 (3.1) BS01 rna N/A GO:0005737 ... G1SY53 38718836
    816577 9bdn:ALNW (3.1) BS01 rna N/A GO:0005737 ... G1U7L1 38718836
    816578 9bdn:ARAC (3.1) BS01 rna N/A GO:0001891 ... G1SJB4 38718836
    816579 9bdn:AS03 (3.1) BS01 rna N/A GO:0003677 ... G1TNM3 38718836
    816580 9bdn:AS04 (3.1) BS01 rna N/A GO:0003723 ... G1TA47 38718836
    816581 9bdn:AS05 (3.1) BS01 rna N/A GO:0000028 ... G1TFM5 38718836
    816582 9bdn:AS06 (3.1) BS01 rna N/A GO:0000082 ... G1TM55 38718836
    816583 9bdn:AS07 (3.1) BS01 rna N/A GO:0003735 ... G1SVB0 38718836
    816584 9bdn:AS08 (3.1) BS01 rna N/A GO:0000462 ... G1TJW1 38718836
    816585 9bdn:AS08 (3.1) BS02 rna N/A GO:0000462 ... G1TJW1 38718836
    816586 9bdn:AS09 (3.1) BS01 rna N/A GO:0003735 ... B7NZS8 38718836
    816587 9bdn:AS11 (3.1) BS01 rna N/A GO:0003735 ... G1TRM4 38718836
    816588 9bdn:AS13 (3.1) BS01 rna N/A GO:0003735 ... G1SP51 38718836
    816589 9bdn:AS16 (3.1) BS01 rna N/A GO:0000462 ... G1SGX4 38718836
    816590 9bdn:AS17 (3.1) BS01 rna N/A GO:0003735 ... G1TU13 38718836
    816591 9bdn:AS18 (3.1) BS01 rna N/A GO:0003735 ... G1TPG3 38718836
    816592 9bdn:AS19 (3.1) BS01 rna N/A GO:0000028 ... G1TN62 38718836
    816593 9bdn:AS22 (3.1) BS01 rna N/A GO:0003735 ... G1TG89 38718836
    816594 9bdn:AS23 (3.1) BS01 rna N/A GO:0003735 ... G1SZ47 38718836
    816595 9bdn:AS24 (3.1) BS01 rna N/A GO:0005840 ... G1T3D8 38718836
    816596 9bdn:AS27 (3.1) BS01 rna N/A GO:0000028 ... G1TZ76 38718836
    816597 9bdn:AS28 (3.1) BS01 rna N/A GO:0000028 ... G1TIB4 38718836
    816598 9bdn:AS29 (3.1) BS01 rna N/A GO:0003735 ... G1U7M4 38718836
    816599 9bdp:AL02 (3.7) BS01 rna N/A GO:0002181 ... G1TT27 38718836
    816600 9bdp:AL02 (3.7) BS02 rna N/A GO:0002181 ... G1TT27 38718836
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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