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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    815601 8yv8:H (3.0) BS02 dna N/A GO:0000786 ... O60814 N/A
    815602 8yvg:A (2.0) BS01 A1L0C N/A GO:0000502 ... A0A8C0T7K4 38906067
    815603 8yvg:F (2.0) BS01 A1L0C N/A GO:0000502 ... A0A8C0T7K4 38906067
    815604 8yvp:M (2.5) BS01 A1L0D N/A GO:0000502 ... Q9Z2U1 38906067
    815605 8yvp:S (2.5) BS01 A1L0D N/A GO:0000502 ... O09061 38906067
    815606 8yvp:X (2.5) BS01 A1L0D N/A GO:0000502 ... O09061 38906067
    815607 8ywo:A (1.58) BS01 02A 3.8.1.2 GO:0009636 ... B2Z3V8 N/A
    815608 8yxm:A (2.93) BS01 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-    		 GO:0001172 ... C0JJA4 38760379
    815609 8yxm:A (2.93) BS02 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-    		 GO:0001172 ... C0JJA4 38760379
    815610 8yxp:A (3.01) BS01 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-    		 GO:0001172 ... C0JJA4 38760379
    815611 8yxp:A (3.01) BS02 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-    		 GO:0001172 ... C0JJA4 38760379
    815612 8yyn:A (1.9) BS01 XYP 3.2.1.8 GO:0004553 ... I3VTR8 N/A
    815613 8yyn:B (1.9) BS01 XYP 3.2.1.8 GO:0004553 ... I3VTR8 N/A
    815614 8yyo:A (1.7) BS01 XYP 3.2.1.8 GO:0004553 ... I3VTR8 N/A
    815615 8yyo:B (1.7) BS01 XYP 3.2.1.8 GO:0004553 ... I3VTR8 N/A
    815616 8yyq:A (1.95) BS01 A1L0G ? GO:0000166 ... A0A0F7R6G7 38805007
    815617 8yyr:A (1.8) BS01 A1L0H ? GO:0000166 ... A0A0F7R6G7 38805007
    815618 8z1l:A (3.4) BS01 A1LX4 N/A GO:0003779 ... P23975 39048818
    815619 8z38:A (2.17) BS01 CPI N/A GO:0000413 ... A0A4P7N8E2 N/A
    815620 8z38:B (2.17) BS01 CPI N/A GO:0000413 ... A0A4P7N8E2 N/A
    815621 8z3s:A (3.9) BS01 A1L04 N/A GO:0001666 ... Q12791 39089879
    815622 8z3s:A (3.9) BS02 Y01 N/A GO:0001666 ... Q12791 39089879
    815623 8z3s:A (3.9) BS03 CA N/A GO:0001666 ... Q12791 39089879
    815624 8z3s:A (3.9) BS04 CA N/A GO:0001666 ... Q12791 39089879
    815625 8z3s:B (3.9) BS01 A1L04 N/A GO:0001666 ... Q12791 39089879
    815626 8z3s:B (3.9) BS02 CA N/A GO:0001666 ... Q12791 39089879
    815627 8z3s:B (3.9) BS03 CA N/A GO:0001666 ... Q12791 39089879
    815628 8z3s:C (3.9) BS01 A1L04 N/A GO:0001666 ... Q12791 39089879
    815629 8z3s:C (3.9) BS02 CA N/A GO:0001666 ... Q12791 39089879
    815630 8z3s:C (3.9) BS03 CA N/A GO:0001666 ... Q12791 39089879
    815631 8z3s:D (3.9) BS01 A1L04 N/A GO:0001666 ... Q12791 39089879
    815632 8z3s:D (3.9) BS02 Y01 N/A GO:0001666 ... Q12791 39089879
    815633 8z3s:D (3.9) BS03 CA N/A GO:0001666 ... Q12791 39089879
    815634 8z3s:D (3.9) BS04 CA N/A GO:0001666 ... Q12791 39089879
    815635 8z5l:A (2.65) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    815636 8z5l:A (2.65) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    815637 8z5l:A (2.65) BS03 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    815638 8z5l:B (2.65) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    815639 8z5l:B (2.65) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    815640 8z5l:B (2.65) BS03 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    815641 8z5l:B (2.65) BS04 A1LXO 3.5.2.6 GO:0008270 ... P52699 38690676
    815642 8z5l:C (2.65) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    815643 8z5l:C (2.65) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    815644 8z5l:C (2.65) BS03 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    815645 8z5l:C (2.65) BS04 A1LXO 3.5.2.6 GO:0008270 ... P52699 38690676
    815646 8z5l:D (2.65) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    815647 8z5l:D (2.65) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    815648 8z5l:D (2.65) BS03 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    815649 8z75:A (1.45) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    815650 8z75:B (1.45) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    815651 8z75:C (1.45) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    815652 8z76:A (1.8) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    815653 8z76:A (1.8) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    815654 8z76:A (1.8) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    815655 8z76:B (1.8) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    815656 8z76:B (1.8) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    815657 8z76:B (1.8) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    815658 8z76:C (1.8) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    815659 8z76:C (1.8) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    815660 8z76:C (1.8) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    815661 8z77:A (2.0) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    815662 8z77:A (2.0) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    815663 8z77:A (2.0) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    815664 8z77:B (2.0) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    815665 8z77:B (2.0) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    815666 8z77:B (2.0) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    815667 8z77:C (2.0) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    815668 8z77:C (2.0) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    815669 8z77:C (2.0) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    815670 8z85:A (2.3) BS01 rna ? GO:0042025 ... P27194 38816392
    815671 8z85:A (2.3) BS02 rna ? GO:0042025 ... P27194 38816392
    815672 8z85:B (2.3) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    815673 8z85:B (2.3) BS02 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    815674 8z8j:A (3.16) BS01 rna ? GO:0042025 ... P27194 38816392
    815675 8z8j:A (3.16) BS02 rna ? GO:0042025 ... P27194 38816392
    815676 8z8j:B (3.16) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    815677 8z8j:B (3.16) BS02 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    815678 8z8n:A (2.79) BS01 rna ? GO:0042025 ... P27194 38816392
    815679 8z8n:A (2.79) BS02 rna ? GO:0042025 ... P27194 38816392
    815680 8z8n:B (2.79) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    815681 8z8n:B (2.79) BS02 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    815682 8z8x:A (3.06) BS01 rna ? GO:0042025 ... P27194 38816392
    815683 8z8x:A (3.06) BS02 rna ? GO:0042025 ... P27194 38816392
    815684 8z8x:B (3.06) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    815685 8z8x:B (3.06) BS02 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    815686 8z8x:B (3.06) BS03 G2P 2.7.7.48 GO:0000166 ... O41353 38816392
    815687 8z8x:C (3.06) BS01 rna ? GO:0006370 ... Q9YNA4 38816392
    815688 8z90:A (2.87) BS01 rna ? GO:0042025 ... P27194 38816392
    815689 8z90:A (2.87) BS02 rna ? GO:0042025 ... P27194 38816392
    815690 8z90:B (2.87) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    815691 8z90:B (2.87) BS02 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    815692 8z90:B (2.87) BS03 G2P 2.7.7.48 GO:0000166 ... O41353 38816392
    815693 8z90:C (2.87) BS01 rna ? GO:0006370 ... Q9YNA4 38816392
    815694 8z97:A (2.65) BS01 rna ? GO:0042025 ... P27194 38816392
    815695 8z97:A (2.65) BS02 rna ? GO:0042025 ... P27194 38816392
    815696 8z97:A (2.65) BS03 rna ? GO:0042025 ... P27194 38816392
    815697 8z97:B (2.65) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    815698 8z97:B (2.65) BS02 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    815699 8z97:B (2.65) BS03 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    815700 8z97:B (2.65) BS04 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    815701 8z97:B (2.65) BS05 V9G 2.7.7.48 GO:0000166 ... O41353 38816392
    815702 8z97:C (2.65) BS01 rna ? GO:0006370 ... Q9YNA4 38816392
    815703 8z97:C (2.65) BS02 rna ? GO:0006370 ... Q9YNA4 38816392
    815704 8z97:C (2.65) BS03 V9G ? GO:0006370 ... Q9YNA4 38816392
    815705 8z98:A (2.52) BS01 rna ? GO:0042025 ... P27194 38816392
    815706 8z98:A (2.52) BS02 V9G ? GO:0042025 ... P27194 38816392
    815707 8z98:B (2.52) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    815708 8z9a:D (3.0) BS01 SOU N/A GO:0004984 ... A0A1S6J146 38870272
    815709 8z9h:A (2.7) BS01 rna ? GO:0042025 ... P27194 38816392
    815710 8z9h:A (2.7) BS02 rna ? GO:0042025 ... P27194 38816392
    815711 8z9h:A (2.7) BS03 rna ? GO:0042025 ... P27194 38816392
    815712 8z9h:B (2.7) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    815713 8z9h:B (2.7) BS02 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    815714 8z9h:B (2.7) BS03 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    815715 8z9h:B (2.7) BS04 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    815716 8z9h:B (2.7) BS05 V9G 2.7.7.48 GO:0000166 ... O41353 38816392
    815717 8z9h:C (2.7) BS01 rna ? GO:0006370 ... Q9YNA4 38816392
    815718 8z9h:C (2.7) BS02 rna ? GO:0006370 ... Q9YNA4 38816392
    815719 8z9h:C (2.7) BS03 V9G ? GO:0006370 ... Q9YNA4 38816392
    815720 8z9h:H (2.7) BS01 rna ? GO:0042025 ... P27194 38816392
    815721 8z9h:H (2.7) BS02 V9G ? GO:0042025 ... P27194 38816392
    815722 8z9h:I (2.7) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    815723 8z9q:A (2.33) BS01 rna ? GO:0042025 ... P27194 38816392
    815724 8z9q:B (2.33) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    815725 8z9r:A (2.58) BS01 rna ? GO:0042025 ... P27194 38816392
    815726 8z9r:A (2.58) BS02 rna ? GO:0042025 ... P27194 38816392
    815727 8z9r:A (2.58) BS03 rna ? GO:0042025 ... P27194 38816392
    815728 8z9r:B (2.58) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    815729 8z9r:B (2.58) BS02 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    815730 8z9r:B (2.58) BS03 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    815731 8z9r:B (2.58) BS04 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    815732 8z9r:C (2.58) BS01 rna ? GO:0006370 ... Q9YNA4 38816392
    815733 8z9r:C (2.58) BS02 rna ? GO:0006370 ... Q9YNA4 38816392
    815734 8z9r:H (2.58) BS01 rna ? GO:0042025 ... P27194 38816392
    815735 8z9r:I (2.58) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    815736 8zav:A (2.9) BS01 NAP N/A GO:0000166 ... A7TM80 N/A
    815737 8zav:B (2.9) BS01 NAP N/A GO:0000166 ... A7TM80 N/A
    815738 8zb8:A (2.94) BS01 GTP N/A GO:0000226 ... Q2XVP4 N/A
    815739 8zb8:A (2.94) BS02 CA N/A GO:0000226 ... Q2XVP4 N/A
    815740 8zb8:A (2.94) BS03 A1D8I N/A GO:0000226 ... Q2XVP4 N/A
    815741 8zb8:B (2.94) BS01 GDP N/A GO:0005525 ... A0A8D1UIR5 N/A
    815742 8zb8:B (2.94) BS02 A1D8I N/A GO:0005525 ... A0A8D1UIR5 N/A
    815743 8zb8:C (2.94) BS01 GTP N/A GO:0000226 ... Q2XVP4 N/A
    815744 8zb8:C (2.94) BS02 CA N/A GO:0000226 ... Q2XVP4 N/A
    815745 8zb8:D (2.94) BS01 GDP N/A GO:0005525 ... A0A8D1UIR5 N/A
    815746 8zb8:D (2.94) BS02 A1D8I N/A GO:0005525 ... A0A8D1UIR5 N/A
    815747 8zb8:F (2.94) BS01 ACP N/A GO:0046872 ... A0A8V0Z8P0 N/A
    815748 8zbe:A (3.24) BS01 peptide N/A GO:0004930 ... P07550
    P35346    		 38926478
    815749 8zcj:G (3.09) BS01 peptide N/A GO:0004930 ... P07550
    P35346    		 38926478
    815750 8zee:A (2.9) BS01 BCT N/A GO:0005506 ... P07753 38890314
    815751 8zee:A (2.9) BS02 CLA N/A GO:0005506 ... P07753 38890314
    815752 8zee:A (2.9) BS03 PHO N/A GO:0005506 ... P07753 38890314
    815753 8zee:A (2.9) BS04 FE2 N/A GO:0005506 ... P07753 38890314
    815754 8zee:A (2.9) BS05 CLA N/A GO:0005506 ... P07753 38890314
    815755 8zee:A (2.9) BS06 CLA N/A GO:0005506 ... P07753 38890314
    815756 8zee:A (2.9) BS07 CLA N/A GO:0005506 ... P07753 38890314
    815757 8zee:B (2.9) BS01 CLA N/A GO:0009507 ... P37255 38890314
    815758 8zee:B (2.9) BS02 CLA N/A GO:0009507 ... P37255 38890314
    815759 8zee:B (2.9) BS03 CLA N/A GO:0009507 ... P37255 38890314
    815760 8zee:B (2.9) BS04 CLA N/A GO:0009507 ... P37255 38890314
    815761 8zee:B (2.9) BS05 CLA N/A GO:0009507 ... P37255 38890314
    815762 8zee:B (2.9) BS06 CLA N/A GO:0009507 ... P37255 38890314
    815763 8zee:B (2.9) BS07 CLA N/A GO:0009507 ... P37255 38890314
    815764 8zee:B (2.9) BS08 CLA N/A GO:0009507 ... P37255 38890314
    815765 8zee:B (2.9) BS09 CLA N/A GO:0009507 ... P37255 38890314
    815766 8zee:B (2.9) BS10 CLA N/A GO:0009507 ... P37255 38890314
    815767 8zee:B (2.9) BS11 CLA N/A GO:0009507 ... P37255 38890314
    815768 8zee:B (2.9) BS12 CLA N/A GO:0009507 ... P37255 38890314
    815769 8zee:B (2.9) BS13 CLA N/A GO:0009507 ... P37255 38890314
    815770 8zee:B (2.9) BS14 CLA N/A GO:0009507 ... P37255 38890314
    815771 8zee:B (2.9) BS15 CLA N/A GO:0009507 ... P37255 38890314
    815772 8zee:C (2.9) BS01 CLA N/A GO:0005737 ... P10898 38890314
    815773 8zee:C (2.9) BS02 CLA N/A GO:0005737 ... P10898 38890314
    815774 8zee:C (2.9) BS03 CLA N/A GO:0005737 ... P10898 38890314
    815775 8zee:C (2.9) BS04 CLA N/A GO:0005737 ... P10898 38890314
    815776 8zee:C (2.9) BS05 CLA N/A GO:0005737 ... P10898 38890314
    815777 8zee:C (2.9) BS06 CLA N/A GO:0005737 ... P10898 38890314
    815778 8zee:C (2.9) BS07 CLA N/A GO:0005737 ... P10898 38890314
    815779 8zee:C (2.9) BS08 CLA N/A GO:0005737 ... P10898 38890314
    815780 8zee:C (2.9) BS09 CLA N/A GO:0005737 ... P10898 38890314
    815781 8zee:C (2.9) BS10 CLA N/A GO:0005737 ... P10898 38890314
    815782 8zee:C (2.9) BS11 CLA N/A GO:0005737 ... P10898 38890314
    815783 8zee:C (2.9) BS12 CLA N/A GO:0005737 ... P10898 38890314
    815784 8zee:C (2.9) BS13 CLA N/A GO:0005737 ... P10898 38890314
    815785 8zee:D (2.9) BS01 CLA N/A GO:0005506 ... P06007 38890314
    815786 8zee:D (2.9) BS02 BCT N/A GO:0005506 ... P06007 38890314
    815787 8zee:D (2.9) BS03 CLA N/A GO:0005506 ... P06007 38890314
    815788 8zee:D (2.9) BS04 CLA N/A GO:0005506 ... P06007 38890314
    815789 8zee:D (2.9) BS05 CLA N/A GO:0005506 ... P06007 38890314
    815790 8zee:D (2.9) BS06 PHO N/A GO:0005506 ... P06007 38890314
    815791 8zee:D (2.9) BS07 PHO N/A GO:0005506 ... P06007 38890314
    815792 8zee:D (2.9) BS08 FE2 N/A GO:0005506 ... P06007 38890314
    815793 8zee:D (2.9) BS09 CLA N/A GO:0005506 ... P06007 38890314
    815794 8zee:E (2.9) BS01 HEM N/A GO:0005506 ... P48268 38890314
    815795 8zee:F (2.9) BS01 HEM N/A GO:0005506 ... Q08363 38890314
    815796 8zee:F (2.9) BS02 VTQ N/A GO:0005506 ... Q08363 38890314
    815797 8zee:H (2.9) BS01 CLA N/A GO:0009507 ... P22666 38890314
    815798 8zee:H (2.9) BS02 CLA N/A GO:0009507 ... P22666 38890314
    815799 8zee:H (2.9) BS03 CLA N/A GO:0009507 ... P22666 38890314
    815800 8zee:I (2.9) BS01 CLA N/A GO:0005737 ... P59763 38890314
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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