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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    815001 8y6i:A (2.54) BS09 R0Z 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    815002 8y6i:A (2.54) BS10 R0Z 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    815003 8y6o:C (3.38) BS01 rna ? GO:0000244 ... Q6P2Q9 38484052
    815004 8y6o:C (3.38) BS02 rna ? GO:0000244 ... Q6P2Q9 38484052
    815005 8y6o:C (3.38) BS03 IHP ? GO:0000244 ... Q6P2Q9 38484052
    815006 8y6o:D (3.38) BS01 GTP ? GO:0000398 ... Q15029 38484052
    815007 8y6o:F (3.38) BS01 rna ? GO:0000375 ... Q96DI7 38484052
    815008 8y6o:G (3.38) BS01 rna ? GO:0000244 ... O94906 38484052
    815009 8y6o:G (3.38) BS02 rna ? GO:0000244 ... O94906 38484052
    815010 8y6o:I (3.38) BS01 rna 3.6.4.13 GO:0000354 ... Q9BUQ8 38484052
    815011 8y6o:I (3.38) BS02 rna 3.6.4.13 GO:0000354 ... Q9BUQ8 38484052
    815012 8y6o:L (3.38) BS01 rna ? GO:0000244 ... Q8WWY3 38484052
    815013 8y6o:L (3.38) BS02 rna ? GO:0000244 ... Q8WWY3 38484052
    815014 8y6o:N (3.38) BS01 rna ? GO:0000244 ... O43395 38484052
    815015 8y6o:N (3.38) BS02 rna ? GO:0000244 ... O43395 38484052
    815016 8y6o:O (3.38) BS01 rna ? GO:0000398 ... P55769 38484052
    815017 8y6o:R (3.38) BS01 rna ? GO:0000398 ... Q86UT8 38484052
    815018 8y6o:R (3.38) BS02 rna ? GO:0000398 ... Q86UT8 38484052
    815019 8y6o:R (3.38) BS03 ZN ? GO:0000398 ... Q86UT8 38484052
    815020 8y6o:R (3.38) BS04 ZN ? GO:0000398 ... Q86UT8 38484052
    815021 8y6o:U (3.38) BS01 ZN 3.4.19.12 GO:0000245 ... Q53GS9 38484052
    815022 8y6o:V (3.38) BS01 ZN ? GO:0005515 ... Q9UDW3 38484052
    815023 8y6o:V (3.38) BS02 ZN ? GO:0005515 ... Q9UDW3 38484052
    815024 8y6o:W (3.38) BS01 rna ? GO:0000398 ... Q16560 38484052
    815025 8y6o:W (3.38) BS02 rna ? GO:0000398 ... Q16560 38484052
    815026 8y6o:X (3.38) BS01 rna ? GO:0000398 ... Q9BV90 38484052
    815027 8y6o:X (3.38) BS02 rna ? GO:0000398 ... Q9BV90 38484052
    815028 8y6o:Y (3.38) BS01 rna ? GO:0005515 ... Q6IEG0 38484052
    815029 8y6o:Y (3.38) BS02 rna ? GO:0005515 ... Q6IEG0 38484052
    815030 8y6o:Y (3.38) BS03 ZN ? GO:0005515 ... Q6IEG0 38484052
    815031 8y6o:Z (3.38) BS01 rna ? GO:0005634 ... Q8N8D1 38484052
    815032 8y6o:a (3.38) BS01 rna ? GO:0000387 ... P14678 38484052
    815033 8y6o:b (3.38) BS01 rna ? GO:0000243 ... P62314 38484052
    815034 8y6o:c (3.38) BS01 rna ? GO:0000245 ... P62316 38484052
    815035 8y6o:d (3.38) BS01 rna ? GO:0000243 ... P62318 38484052
    815036 8y6o:e (3.38) BS01 rna ? GO:0000245 ... P62304 38484052
    815037 8y6o:f (3.38) BS01 rna ? GO:0000387 ... P62306 38484052
    815038 8y6o:g (3.38) BS01 rna ? GO:0000245 ... P62308 38484052
    815039 8y6o:h (3.38) BS01 rna ? GO:0000387 ... P14678 38484052
    815040 8y6o:i (3.38) BS01 rna ? GO:0000243 ... P62314 38484052
    815041 8y6o:j (3.38) BS01 rna ? GO:0000245 ... P62316 38484052
    815042 8y6o:k (3.38) BS01 rna ? GO:0000243 ... P62318 38484052
    815043 8y6o:l (3.38) BS01 rna ? GO:0000245 ... P62304 38484052
    815044 8y6o:m (3.38) BS01 rna ? GO:0000387 ... P62306 38484052
    815045 8y6o:n (3.38) BS01 rna ? GO:0000245 ... P62308 38484052
    815046 8y6o:o (3.38) BS01 rna ? GO:0000387 ... P14678 38484052
    815047 8y6o:p (3.38) BS01 rna ? GO:0000243 ... P62314 38484052
    815048 8y6o:q (3.38) BS01 rna ? GO:0000245 ... P62316 38484052
    815049 8y6o:r (3.38) BS01 rna ? GO:0000243 ... P62318 38484052
    815050 8y6o:s (3.38) BS01 rna ? GO:0000245 ... P62304 38484052
    815051 8y6o:t (3.38) BS01 rna ? GO:0000387 ... P62306 38484052
    815052 8y6o:u (3.38) BS01 rna ? GO:0000245 ... P62308 38484052
    815053 8y6u:C (3.97) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 38039839
    815054 8y6u:C (3.97) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 38039839
    815055 8y6u:D (3.97) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 38039839
    815056 8y6u:D (3.97) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 38039839
    815057 8y6u:F (3.97) BS01 dna ? GO:0003677 ... Q0P6L9 38039839
    815058 8y6u:F (3.97) BS02 dna ? GO:0003677 ... Q0P6L9 38039839
    815059 8y6u:H (3.97) BS01 dna ? GO:0003677 ... P0A9F6 38039839
    815060 8y6u:H (3.97) BS02 dna ? GO:0003677 ... P0A9F6 38039839
    815061 8y6u:I (3.97) BS01 dna 2.7.7.6 GO:0000345 ... P0A7Z4 38039839
    815062 8y6u:I (3.97) BS02 dna 2.7.7.6 GO:0000345 ... P0A7Z4 38039839
    815063 8y6u:J (3.97) BS01 dna ? GO:0003677 ... P0A9F6 38039839
    815064 8y6u:J (3.97) BS02 dna ? GO:0003677 ... P0A9F6 38039839
    815065 8y7e:1 (4.66) BS01 rna ? GO:0000245 ... O75533 38484052
    815066 8y7e:1 (4.66) BS02 rna ? GO:0000245 ... O75533 38484052
    815067 8y7e:2 (4.66) BS01 rna ? GO:0000398 ... Q13435 38484052
    815068 8y7e:6 (4.66) BS01 rna ? GO:0000398 ... Q7RTV0 38484052
    815069 8y7e:6 (4.66) BS02 rna ? GO:0000398 ... Q7RTV0 38484052
    815070 8y7e:6 (4.66) BS03 ZN ? GO:0000398 ... Q7RTV0 38484052
    815071 8y7e:6 (4.66) BS04 ZN ? GO:0000398 ... Q7RTV0 38484052
    815072 8y7e:6 (4.66) BS05 ZN ? GO:0000398 ... Q7RTV0 38484052
    815073 8y7e:h (4.66) BS01 rna ? GO:0000243 ... P62318 38484052
    815074 8y7e:i (4.66) BS01 rna ? GO:0000387 ... P14678 38484052
    815075 8y7e:j (4.66) BS01 rna ? GO:0000243 ... P62314 38484052
    815076 8y7e:k (4.66) BS01 rna ? GO:0000245 ... P62316 38484052
    815077 8y7e:l (4.66) BS01 rna ? GO:0000245 ... P62304 38484052
    815078 8y7e:m (4.66) BS01 rna ? GO:0000387 ... P62306 38484052
    815079 8y7e:n (4.66) BS01 rna ? GO:0000245 ... P62308 38484052
    815080 8y7e:v (4.66) BS01 rna ? GO:0000380 ... Q9BWG6 38484052
    815081 8y7e:v (4.66) BS02 ZN ? GO:0000380 ... Q9BWG6 38484052
    815082 8y7y:A (3.24) BS01 MJJ N/A GO:0016020 ... Q5MQD0 38964329
    815083 8y81:B (2.89) BS01 Y01 N/A GO:0005768 ... P13386 39169187
    815084 8y84:B (2.98) BS01 Y01 N/A GO:0005768 ... P13386 39169187
    815085 8y85:A (2.73) BS01 BCT N/A GO:0005452 ... P48751 39033175
    815086 8y85:A (2.73) BS02 4KU N/A GO:0005452 ... P48751 39033175
    815087 8y85:B (2.73) BS01 4KU N/A GO:0005452 ... P48751 39033175
    815088 8y86:A (2.75) BS01 BCT N/A GO:0005452 ... P48751 39033175
    815089 8y8b:A (3.01) BS01 MJJ N/A GO:0016020 ... Q0ZME7 38964329
    815090 8y8j:A (3.57) BS01 MJJ N/A GO:0016020 ... Q0ZME7 38964329
    815091 8y8z:A (3.29) BS01 A1LX3 ? GO:0003779 ... P23975 38750358
    815092 8y8z:E (3.29) BS01 A1LX3 ? GO:0003779 ... P23975 38750358
    815093 8y90:A (3.15) BS01 A1LX6 ? GO:0003779 ... P23975 38750358
    815094 8y91:A (3.13) BS01 A1LX5 ? GO:0003779 ... P23975 38750358
    815095 8y91:D (3.13) BS01 A1LX5 ? GO:0003779 ... P23975 38750358
    815096 8y92:A (3.29) BS01 A1LX4 ? GO:0003779 ... P23975 38750358
    815097 8y92:B (3.29) BS01 A1LX4 ? GO:0003779 ... P23975 38750358
    815098 8y93:A (3.0) BS01 TP0 ? GO:0003779 ... P23975 38750358
    815099 8y95:A (3.24) BS01 E5E ? GO:0003779 ... P23975 38750358
    815100 8y95:D (3.24) BS01 E5E ? GO:0003779 ... P23975 38750358
    815101 8y9v:C (1.9) BS01 peptide 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004252 ... Q32ZE1 N/A
    815102 8y9v:D (1.9) BS01 peptide 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... Q32ZE1 N/A
    815103 8y9x:A (2.0) BS01 HEM 1.11.1.7 GO:0004601 ... P80025 N/A
    815104 8y9x:A (2.0) BS02 CA 1.11.1.7 GO:0004601 ... P80025 N/A
    815105 8yb6:A (3.06) BS01 rna N/A GO:0051607 ... A0A1V6F8C5 39047725
    815106 8yb6:A (3.06) BS02 ZN N/A GO:0051607 ... A0A1V6F8C5 39047725
    815107 8yb6:B (3.06) BS01 rna N/A GO:0016787 ... A0A1V6F8C4 39047725
    815108 8ybe:A (2.3) BS01 GLC ? GO:0005515 ... P0AEX9 N/A
    815109 8ybe:A (2.3) BS02 GLC ? GO:0005515 ... P0AEX9 N/A
    815110 8ybj:A (2.38) BS01 dna N/A GO:0000786 ... P68431 38972377
    815111 8ybj:A (2.38) BS02 dna N/A GO:0000786 ... P68431 38972377
    815112 8ybj:B (2.38) BS01 dna N/A GO:0000781 ... P62805 38972377
    815113 8ybj:B (2.38) BS02 dna N/A GO:0000781 ... P62805 38972377
    815114 8ybj:C (2.38) BS01 dna N/A GO:0000786 ... P04908 38972377
    815115 8ybj:C (2.38) BS02 dna N/A GO:0000786 ... P04908 38972377
    815116 8ybj:D (2.38) BS01 dna N/A GO:0000786 ... P06899 38972377
    815117 8ybj:D (2.38) BS02 dna N/A GO:0000786 ... P06899 38972377
    815118 8ybj:E (2.38) BS01 dna N/A GO:0000786 ... P68431 38972377
    815119 8ybj:E (2.38) BS02 dna N/A GO:0000786 ... P68431 38972377
    815120 8ybj:F (2.38) BS01 dna N/A GO:0000781 ... P62805 38972377
    815121 8ybj:F (2.38) BS02 dna N/A GO:0000781 ... P62805 38972377
    815122 8ybj:G (2.38) BS01 dna N/A GO:0000786 ... P04908 38972377
    815123 8ybj:G (2.38) BS02 dna N/A GO:0000786 ... P04908 38972377
    815124 8ybj:H (2.38) BS01 dna N/A GO:0000786 ... P06899 38972377
    815125 8ybj:H (2.38) BS02 dna N/A GO:0000786 ... P06899 38972377
    815126 8ybk:A (2.69) BS01 dna N/A GO:0000786 ... P68431 38972377
    815127 8ybk:A (2.69) BS02 dna N/A GO:0000786 ... P68431 38972377
    815128 8ybk:B (2.69) BS01 dna N/A GO:0000781 ... P62805 38972377
    815129 8ybk:B (2.69) BS02 dna N/A GO:0000781 ... P62805 38972377
    815130 8ybk:C (2.69) BS01 dna N/A GO:0000786 ... P04908 38972377
    815131 8ybk:C (2.69) BS02 dna N/A GO:0000786 ... P04908 38972377
    815132 8ybk:D (2.69) BS01 dna N/A GO:0000786 ... P06899 38972377
    815133 8ybk:E (2.69) BS01 dna N/A GO:0000786 ... P68431 38972377
    815134 8ybk:E (2.69) BS02 dna N/A GO:0000786 ... P68431 38972377
    815135 8ybk:F (2.69) BS01 dna N/A GO:0000781 ... P62805 38972377
    815136 8ybk:F (2.69) BS02 dna N/A GO:0000781 ... P62805 38972377
    815137 8ybk:G (2.69) BS01 dna N/A GO:0000786 ... P04908 38972377
    815138 8ybk:G (2.69) BS02 dna N/A GO:0000786 ... P04908 38972377
    815139 8ybk:H (2.69) BS01 dna N/A GO:0000786 ... P06899 38972377
    815140 8ybk:H (2.69) BS02 dna N/A GO:0000786 ... P06899 38972377
    815141 8yc0:e (4.12) BS01 peptide ? GO:0004888 ... P07766 38657677
    815142 8yc0:m (4.12) BS01 peptide ? GO:0002250 ... A0JD36
    B7Z8K6    		 38657677
    815143 8yc0:m (4.12) BS02 CLR ? GO:0002250 ... A0JD36
    B7Z8K6    		 38657677
    815144 8yc0:n (4.12) BS01 peptide ? GO:0002250 ... P0CF51
    Q99603    		 38657677
    815145 8ye0:A (1.94) BS01 PIS N/A GO:0016740 ... A0A551Z2V8 38837490
    815146 8ye0:B (1.94) BS01 PIS N/A GO:0016740 ... A0A551Z2V8 38837490
    815147 8ye0:C (1.94) BS01 PIS N/A GO:0016740 ... A0A551Z2V8 38837490
    815148 8ye0:D (1.94) BS01 PIS N/A GO:0016740 ... A0A551Z2V8 38837490
    815149 8yf1:A (3.38) BS01 VLX ? GO:0005783 ... Q7L0J3 N/A
    815150 8yf1:B (3.38) BS01 VLX ? GO:0005783 ... Q7L0J3 N/A
    815151 8ygj:A (3.2) BS01 rna 3.1.-.- GO:0003677 ... Q99ZW2 38811740
    815152 8ygj:A (3.2) BS02 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811740
    815153 8ygj:A (3.2) BS03 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811740
    815154 8ygw:A (3.301) BS01 B96 2.7.11.24 GO:0000165 ... Q15759 N/A
    815155 8ygy:A (2.401) BS01 FUC 3.4.21.35 GO:0003073 ... P06870 N/A
    815156 8yha:A (3.4) BS01 rna N/A GO:0051607 ... A0A1V6F8C5 39047725
    815157 8yha:A (3.4) BS02 dna N/A GO:0051607 ... A0A1V6F8C5 39047725
    815158 8yha:A (3.4) BS03 ZN N/A GO:0051607 ... A0A1V6F8C5 39047725
    815159 8yha:B (3.4) BS01 rna N/A GO:0016787 ... A0A1V6F8C4 39047725
    815160 8yha:B (3.4) BS02 dna N/A GO:0016787 ... A0A1V6F8C4 39047725
    815161 8yhf:A (1.4) BS01 A1D6I 2.7.11.30 GO:0004672 ... P36897 N/A
    815162 8yhh:A (1.95) BS01 ADP ? GO:0003777 ... P52732 N/A
    815163 8yhh:B (1.95) BS01 ADP ? GO:0003777 ... P52732 N/A
    815164 8yhl:A (1.47) BS01 A1D6I 2.7.11.30 GO:0004672 ... P36897 N/A
    815165 8yhr:A (1.7) BS01 ORO 1.3.5.2 GO:0004151 ... Q02127 38724483
    815166 8yhr:A (1.7) BS02 FMN 1.3.5.2 GO:0004151 ... Q02127 38724483
    815167 8yhr:A (1.7) BS03 A1LYU 1.3.5.2 GO:0004151 ... Q02127 38724483
    815168 8yhw:A (2.9) BS01 AGS 2.7.11.25 GO:0004672 ... Q99558 N/A
    815169 8yhw:A (2.9) BS02 MG 2.7.11.25 GO:0004672 ... Q99558 N/A
    815170 8yhw:B (2.9) BS01 AGS 2.7.11.25 GO:0004672 ... Q99558 N/A
    815171 8yhw:B (2.9) BS02 MG 2.7.11.25 GO:0004672 ... Q99558 N/A
    815172 8yhw:C (2.9) BS01 AGS 2.7.11.25 GO:0004672 ... Q99558 N/A
    815173 8yhw:C (2.9) BS02 MG 2.7.11.25 GO:0004672 ... Q99558 N/A
    815174 8yhw:D (2.9) BS01 AGS 2.7.11.25 GO:0004672 ... Q99558 N/A
    815175 8yhw:D (2.9) BS02 MG 2.7.11.25 GO:0004672 ... Q99558 N/A
    815176 8yie:A (1.7) BS01 AC1 N/A GO:0004556 ... D2YYD7 N/A
    815177 8yie:B (1.7) BS01 AC1 N/A GO:0004556 ... D2YYD7 N/A
    815178 8yif:A (1.6) BS01 A1L2I N/A GO:0004556 ... D2YYD7 N/A
    815179 8yj6:C (1.37) BS01 ZN N/A GO:0005886 ... P0A4G4 38747382
    815180 8yj7:A (2.8) BS01 ZN N/A GO:0005886 ... P0A4G4 38747382
    815181 8yj7:B (2.8) BS01 ZN N/A GO:0005886 ... P0A4G4 38747382
    815182 8yj7:C (2.8) BS01 ZN N/A GO:0005886 ... P0A4G4 38747382
    815183 8yj7:D (2.8) BS01 ZN N/A GO:0005886 ... P0A4G4 38747382
    815184 8yj8:A (1.65) BS01 ZN N/A GO:0005886 ... P0A4G4 38747382
    815185 8yj8:B (1.65) BS01 ZN N/A GO:0005886 ... P0A4G4 38747382
    815186 8yjx:A (2.95) BS01 ZN N/A GO:0004180 ... A0A1Y2P428 38581948
    815187 8yjx:B (2.95) BS01 ZN N/A GO:0004180 ... A0A1Y2P428 38581948
    815188 8yk5:A (2.1) BS01 CA 3.1.4.3 GO:0004629 ... A0A077KPD5 38503170
    815189 8yk5:A (2.1) BS02 GOL 3.1.4.3 GO:0004629 ... A0A077KPD5 38503170
    815190 8yk5:B (2.1) BS01 CA 3.1.4.3 GO:0004629 ... A0A077KPD5 38503170
    815191 8yk5:B (2.1) BS02 GOL 3.1.4.3 GO:0004629 ... A0A077KPD5 38503170
    815192 8ykv:R (2.48) BS01 A1LYV ? GO:0002001 ... Q9BXA5 38834763
    815193 8yky:R (2.99) BS01 A1AEI N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    815194 8yky:R (2.99) BS02 CLR N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    815195 8ylb:A (2.15) BS01 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    815196 8ylb:A (2.15) BS02 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    815197 8ylb:B (2.15) BS01 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    815198 8ylb:B (2.15) BS02 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    815199 8ylb:C (2.15) BS01 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    815200 8ylb:C (2.15) BS02 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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