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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    807401 8val:B (3.7) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    807402 8val:C (3.7) BS01 dna 2.7.7.7 GO:0003677 ... P06710 38490435
    807403 8val:C (3.7) BS02 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    807404 8val:C (3.7) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    807405 8val:C (3.7) BS04 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    807406 8val:C (3.7) BS05 MG 2.7.7.7 GO:0003677 ... P06710 38490435
    807407 8val:D (3.7) BS01 dna 2.7.7.7 GO:0003677 ... P06710 38490435
    807408 8val:D (3.7) BS02 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    807409 8val:D (3.7) BS03 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    807410 8val:D (3.7) BS04 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    807411 8val:E (3.7) BS01 dna 2.7.7.7 GO:0003677 ... P28631 38490435
    807412 8val:E (3.7) BS02 ZN 2.7.7.7 GO:0003677 ... P28631 38490435
    807413 8vam:B (3.9) BS01 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    807414 8vam:B (3.9) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    807415 8vam:B (3.9) BS03 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    807416 8vam:B (3.9) BS04 MG 2.7.7.7 GO:0003677 ... P06710 38490435
    807417 8vam:C (3.9) BS01 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    807418 8vam:C (3.9) BS02 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    807419 8vam:C (3.9) BS03 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    807420 8vam:D (3.9) BS01 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    807421 8vam:D (3.9) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    807422 8vam:D (3.9) BS03 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    807423 8vam:D (3.9) BS04 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    807424 8vam:E (3.9) BS01 ZN 2.7.7.7 GO:0003677 ... P28631 38490435
    807425 8vap:B (3.0) BS01 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    807426 8vap:B (3.0) BS02 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    807427 8vap:B (3.0) BS03 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    807428 8vap:C (3.0) BS01 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    807429 8vap:C (3.0) BS02 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    807430 8vap:C (3.0) BS03 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    807431 8vap:D (3.0) BS01 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    807432 8vap:D (3.0) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    807433 8vap:D (3.0) BS03 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    807434 8vap:D (3.0) BS04 MG 2.7.7.7 GO:0003677 ... P06710 38490435
    807435 8vap:D (3.0) BS05 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    807436 8vap:E (3.0) BS01 ZN 2.7.7.7 GO:0003677 ... P28631 38490435
    807437 8vaq:A (3.8) BS01 dna 2.7.7.7 GO:0003677 ... P28630 38490435
    807438 8vaq:A (3.8) BS02 dna 2.7.7.7 GO:0003677 ... P28630 38490435
    807439 8vaq:B (3.8) BS01 dna 2.7.7.7 GO:0003677 ... P06710 38490435
    807440 8vaq:B (3.8) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    807441 8vaq:B (3.8) BS03 MG 2.7.7.7 GO:0003677 ... P06710 38490435
    807442 8vaq:B (3.8) BS04 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    807443 8vaq:C (3.8) BS01 dna 2.7.7.7 GO:0003677 ... P06710 38490435
    807444 8vaq:C (3.8) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    807445 8vaq:C (3.8) BS03 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    807446 8vaq:D (3.8) BS01 dna 2.7.7.7 GO:0003677 ... P06710 38490435
    807447 8vaq:D (3.8) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    807448 8vaq:D (3.8) BS03 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    807449 8vaq:D (3.8) BS04 MG 2.7.7.7 GO:0003677 ... P06710 38490435
    807450 8vaq:D (3.8) BS05 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    807451 8vaq:E (3.8) BS01 dna 2.7.7.7 GO:0003677 ... P28631 38490435
    807452 8vaq:E (3.8) BS02 ZN 2.7.7.7 GO:0003677 ... P28631 38490435
    807453 8var:A (3.9) BS01 dna 2.7.7.7 GO:0003677 ... P28630 38490435
    807454 8var:B (3.9) BS01 dna 2.7.7.7 GO:0003677 ... P06710 38490435
    807455 8var:B (3.9) BS02 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    807456 8var:B (3.9) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    807457 8var:B (3.9) BS04 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    807458 8var:C (3.9) BS01 dna 2.7.7.7 GO:0003677 ... P06710 38490435
    807459 8var:C (3.9) BS02 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    807460 8var:C (3.9) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    807461 8var:C (3.9) BS04 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    807462 8var:D (3.9) BS01 dna 2.7.7.7 GO:0003677 ... P06710 38490435
    807463 8var:D (3.9) BS02 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    807464 8var:D (3.9) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    807465 8var:D (3.9) BS04 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    807466 8var:D (3.9) BS05 MG 2.7.7.7 GO:0003677 ... P06710 38490435
    807467 8var:E (3.9) BS01 dna 2.7.7.7 GO:0003677 ... P28631 38490435
    807468 8var:E (3.9) BS02 ZN 2.7.7.7 GO:0003677 ... P28631 38490435
    807469 8var:G (3.9) BS01 dna ? GO:0003677 ... P0A988 38490435
    807470 8vas:A (3.8) BS01 dna 2.7.7.7 GO:0003677 ... P28630 38490435
    807471 8vas:B (3.8) BS01 dna 2.7.7.7 GO:0003677 ... P06710 38490435
    807472 8vas:B (3.8) BS02 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    807473 8vas:B (3.8) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    807474 8vas:B (3.8) BS04 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    807475 8vas:C (3.8) BS01 dna 2.7.7.7 GO:0003677 ... P06710 38490435
    807476 8vas:C (3.8) BS02 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    807477 8vas:C (3.8) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    807478 8vas:C (3.8) BS04 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    807479 8vas:D (3.8) BS01 dna 2.7.7.7 GO:0003677 ... P06710 38490435
    807480 8vas:D (3.8) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    807481 8vas:D (3.8) BS03 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    807482 8vas:E (3.8) BS01 dna 2.7.7.7 GO:0003677 ... P28631 38490435
    807483 8vas:E (3.8) BS02 ZN 2.7.7.7 GO:0003677 ... P28631 38490435
    807484 8vat:A (3.2) BS01 dna 2.7.7.7 GO:0003677 ... P28630 38490435
    807485 8vat:B (3.2) BS01 dna 2.7.7.7 GO:0003677 ... P06710 38490435
    807486 8vat:B (3.2) BS02 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    807487 8vat:B (3.2) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    807488 8vat:B (3.2) BS04 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    807489 8vat:C (3.2) BS01 dna 2.7.7.7 GO:0003677 ... P06710 38490435
    807490 8vat:C (3.2) BS02 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    807491 8vat:C (3.2) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    807492 8vat:C (3.2) BS04 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    807493 8vat:D (3.2) BS01 dna 2.7.7.7 GO:0003677 ... P06710 38490435
    807494 8vat:D (3.2) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    807495 8vat:D (3.2) BS03 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    807496 8vat:D (3.2) BS04 MG 2.7.7.7 GO:0003677 ... P06710 38490435
    807497 8vat:E (3.2) BS01 dna 2.7.7.7 GO:0003677 ... P28631 38490435
    807498 8vat:E (3.2) BS02 ZN 2.7.7.7 GO:0003677 ... P28631 38490435
    807499 8vb1:A (1.3) BS01 A1AAD ? GO:0004190 ... G0X8E8 38380945
    807500 8vb1:B (1.3) BS01 A1AAD ? GO:0004190 ... G0X8E8 38380945
    807501 8vbu:A (2.0) BS01 1S6 ? GO:0008658 ... Q2FZ94 38527711
    807502 8vbu:B (2.0) BS01 1S6 ? GO:0008658 ... Q2FZ94 38527711
    807503 8vbv:A (2.4) BS01 63U ? GO:0008658 ... Q2FZ94 38527711
    807504 8vbv:B (2.4) BS01 63U ? GO:0008658 ... Q2FZ94 38527711
    807505 8vbw:A (2.3) BS01 1RG ? GO:0008658 ... Q2FZ94 38527711
    807506 8vbw:B (2.3) BS01 1RG ? GO:0008658 ... Q2FZ94 38527711
    807507 8vc1:A (2.85) BS01 9Z9 ? GO:0001582 ... B3GTD7 38187590
    807508 8vc1:B (2.85) BS01 9Z9 ? GO:0001582 ... B3GTD7 38187590
    807509 8vc1:C (2.85) BS01 9Z9 ? GO:0001582 ... B3GTD7 38187590
    807510 8vc1:D (2.85) BS01 9Z9 ? GO:0001582 ... B3GTD7 38187590
    807511 8vc5:A (2.3) BS01 ZN 6.1.1.17 GO:0000049 ... Q9XCL6 N/A
    807512 8vc5:B (2.3) BS01 ZN 6.1.1.17 GO:0000049 ... Q9XCL6 N/A
    807513 8vcj:A (3.32) BS01 ADP N/A GO:0003677 ... P05846 38834067
    807514 8vcj:B (3.32) BS01 dna N/A GO:0003677 ... P05846 38834067
    807515 8vcj:B (3.32) BS02 ADP N/A GO:0003677 ... P05846 38834067
    807516 8vcj:B (3.32) BS03 AGS N/A GO:0003677 ... P05846 38834067
    807517 8vcj:C (3.32) BS01 dna N/A GO:0003677 ... P05846 38834067
    807518 8vcj:C (3.32) BS02 AGS N/A GO:0003677 ... P05846 38834067
    807519 8vcj:D (3.32) BS01 ADP N/A GO:0003677 ... P05846 38834067
    807520 8vcj:D (3.32) BS02 MG N/A GO:0003677 ... P05846 38834067
    807521 8vcj:E (3.32) BS01 ADP N/A GO:0003677 ... P05846 38834067
    807522 8vcj:F (3.32) BS01 dna N/A GO:0003677 ... P05846 38834067
    807523 8vcj:F (3.32) BS02 ADP N/A GO:0003677 ... P05846 38834067
    807524 8vcj:G (3.32) BS01 AGS N/A GO:0003677 ... P05846 38834067
    807525 8vcn:A (1.47) BS01 FMN ? GO:0000166 ... A1E8I9 38442365
    807526 8vct:A (3.83) BS01 ADP N/A GO:0003677 ... P05846 38834067
    807527 8vct:B (3.83) BS01 dna N/A GO:0003677 ... P05846 38834067
    807528 8vct:B (3.83) BS02 AGS N/A GO:0003677 ... P05846 38834067
    807529 8vct:B (3.83) BS03 ADP N/A GO:0003677 ... P05846 38834067
    807530 8vct:C (3.83) BS01 dna N/A GO:0003677 ... P05846 38834067
    807531 8vct:C (3.83) BS02 AGS N/A GO:0003677 ... P05846 38834067
    807532 8vct:E (3.83) BS01 ADP N/A GO:0003677 ... P05846 38834067
    807533 8vct:E (3.83) BS02 MG N/A GO:0003677 ... P05846 38834067
    807534 8vct:F (3.83) BS01 ADP N/A GO:0003677 ... P05846 38834067
    807535 8vct:G (3.83) BS01 AGS N/A GO:0003677 ... P05846 38834067
    807536 8vcw:A (1.35) BS01 SAM 2.8.1.6 GO:0003824 ... A5ZUL4 38215281
    807537 8vcw:A (1.35) BS02 Q46 2.8.1.6 GO:0003824 ... A5ZUL4 38215281
    807538 8vcw:A (1.35) BS03 SF4 2.8.1.6 GO:0003824 ... A5ZUL4 38215281
    807539 8vcw:A (1.35) BS04 DTB 2.8.1.6 GO:0003824 ... A5ZUL4 38215281
    807540 8vda:A (2.02) BS01 COA 2.3.1.180
    2.3.1.300    		 GO:0004315 ... O34746 38310992
    807541 8vdw:A (1.807) BS01 Q46 2.8.1.6 GO:0003824 ... N/A 38215281
    807542 8vdw:A (1.807) BS02 SAM 2.8.1.6 GO:0003824 ... N/A 38215281
    807543 8vdw:A (1.807) BS03 SF4 2.8.1.6 GO:0003824 ... N/A 38215281
    807544 8vdw:A (1.807) BS04 DTB 2.8.1.6 GO:0003824 ... N/A 38215281
    807545 8vdw:B (1.807) BS01 Q46 2.8.1.6 GO:0003824 ... N/A 38215281
    807546 8vdw:B (1.807) BS02 DTB 2.8.1.6 GO:0003824 ... N/A 38215281
    807547 8vdw:B (1.807) BS03 SF4 2.8.1.6 GO:0003824 ... N/A 38215281
    807548 8vdw:B (1.807) BS04 SAM 2.8.1.6 GO:0003824 ... N/A 38215281
    807549 8ve0:A (3.1) BS01 1WZ ? GO:0005179 ... P02766 N/A
    807550 8ve0:B (3.1) BS01 1WZ ? GO:0005179 ... P02766 N/A
    807551 8ve0:C (3.1) BS01 1WZ ? GO:0005179 ... P02766 N/A
    807552 8ve0:D (3.1) BS01 1WZ ? GO:0005179 ... P02766 N/A
    807553 8ve1:A (2.7) BS01 1WZ ? GO:0005179 ... P02766 N/A
    807554 8ve1:B (2.7) BS01 1WZ ? GO:0005179 ... P02766 N/A
    807555 8ve1:C (2.7) BS01 1WZ ? GO:0005179 ... P02766 N/A
    807556 8ve1:D (2.7) BS01 1WZ ? GO:0005179 ... P02766 N/A
    807557 8ve5:B (3.4) BS01 P2C ? GO:0005179 ... P02766 N/A
    807558 8ve5:D (3.4) BS01 P2C ? GO:0005179 ... P02766 N/A
    807559 8ve6:B (4.1) BS01 P2C ? GO:0005179 ... P02766 N/A
    807560 8ve6:D (4.1) BS01 P2C ? GO:0005179 ... P02766 N/A
    807561 8vec:A (2.0) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 39043718
    807562 8veh:C (2.6) BS01 GLY ? GO:0030288 ... Q1RKI7 N/A
    807563 8ven:A (1.8) BS01 A1ADP 3.4.16.4 GO:0008658 ... F2Z7K9 38446051
    807564 8veo:A (2.03) BS01 MTA 2.1.1.320 GO:0000387 ... O14744 38595098
    807565 8vep:A (2.002) BS01 JPP 3.4.16.4 GO:0008658 ... F2Z7K9 38446051
    807566 8veq:A (2.4) BS01 59H 3.4.16.4 GO:0008658 ... F2Z7K9 38446051
    807567 8vet:A (2.63) BS01 MTA 2.1.1.320 GO:0000387 ... O14744 38595098
    807568 8vet:A (2.63) BS02 A1AAS 2.1.1.320 GO:0000387 ... O14744 38595098
    807569 8veu:A (2.46) BS01 MTA 2.1.1.320 GO:0000387 ... O14744 38595098
    807570 8veu:A (2.46) BS02 A1AAT 2.1.1.320 GO:0000387 ... O14744 38595098
    807571 8vew:A (2.69) BS01 MTA 2.1.1.320 GO:0000387 ... O14744 38595098
    807572 8vew:A (2.69) BS02 A1AAU 2.1.1.320 GO:0000387 ... O14744 38595098
    807573 8vex:A (2.79) BS01 MTA 2.1.1.320 GO:0000387 ... O14744 38595098
    807574 8vex:A (2.79) BS02 A1AAR 2.1.1.320 GO:0000387 ... O14744 38595098
    807575 8vey:A (2.44) BS01 MTA 2.1.1.320 GO:0000387 ... O14744 38595098
    807576 8vey:A (2.44) BS02 A1AAV 2.1.1.320 GO:0000387 ... O14744 38595098
    807577 8vf0:A (2.028) BS01 ANN N/A GO:0004497 ... Q2IU02 N/A
    807578 8vf0:A (2.028) BS02 HEM N/A GO:0004497 ... Q2IU02 N/A
    807579 8vf3:A (1.469) BS01 ANN N/A GO:0004497 ... Q2IU02 N/A
    807580 8vf3:A (1.469) BS02 HEM N/A GO:0004497 ... Q2IU02 N/A
    807581 8vf8:A (1.98) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    807582 8vf8:A (1.98) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    807583 8vf8:A (1.98) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    807584 8vf9:A (1.9) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    807585 8vf9:A (1.9) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    807586 8vf9:A (1.9) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    807587 8vfa:A (2.05) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    807588 8vfa:A (2.05) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    807589 8vfa:A (2.05) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    807590 8vfa:A (2.05) BS04 G2P 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    807591 8vfa:A (2.05) BS05 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    807592 8vfa:A (2.05) BS06 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    807593 8vfb:A (2.64) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    807594 8vfb:A (2.64) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    807595 8vfb:A (2.64) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    807596 8vfb:A (2.64) BS04 G2P 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    807597 8vfb:A (2.64) BS05 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    807598 8vfb:A (2.64) BS06 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    807599 8vfc:A (2.48) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    807600 8vfc:A (2.48) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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