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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    802201 8u8s:B (2.63) BS06 GLY ? GO:0005507 ... Q9XAL8 37926680
    802202 8u8s:B (2.63) BS07 GLY ? GO:0005507 ... Q9XAL8 37926680
    802203 8u8s:B (2.63) BS08 GLY ? GO:0005507 ... Q9XAL8 37926680
    802204 8u8s:B (2.63) BS09 GLY ? GO:0005507 ... Q9XAL8 37926680
    802205 8u8s:B (2.63) BS10 CU ? GO:0005507 ... Q9XAL8 37926680
    802206 8u8s:C (2.63) BS01 CU ? GO:0005507 ... Q9XAL8 37926680
    802207 8u8s:C (2.63) BS02 GLY ? GO:0005507 ... Q9XAL8 37926680
    802208 8u8s:C (2.63) BS03 CU ? GO:0005507 ... Q9XAL8 37926680
    802209 8u8s:C (2.63) BS04 CU ? GO:0005507 ... Q9XAL8 37926680
    802210 8u8s:C (2.63) BS05 CU ? GO:0005507 ... Q9XAL8 37926680
    802211 8u8s:C (2.63) BS06 GLY ? GO:0005507 ... Q9XAL8 37926680
    802212 8u8s:C (2.63) BS07 GLY ? GO:0005507 ... Q9XAL8 37926680
    802213 8u8s:C (2.63) BS08 GLY ? GO:0005507 ... Q9XAL8 37926680
    802214 8u8s:C (2.63) BS09 GLY ? GO:0005507 ... Q9XAL8 37926680
    802215 8u8t:A (2.9) BS01 CU ? GO:0005507 ... Q9XAL8 37926680
    802216 8u8t:A (2.9) BS02 CU ? GO:0005507 ... Q9XAL8 37926680
    802217 8u8t:A (2.9) BS03 GLY ? GO:0005507 ... Q9XAL8 37926680
    802218 8u8t:A (2.9) BS04 GLY ? GO:0005507 ... Q9XAL8 37926680
    802219 8u8t:A (2.9) BS05 GLY ? GO:0005507 ... Q9XAL8 37926680
    802220 8u8t:A (2.9) BS06 GLY ? GO:0005507 ... Q9XAL8 37926680
    802221 8u8t:A (2.9) BS07 GLY ? GO:0005507 ... Q9XAL8 37926680
    802222 8u8t:A (2.9) BS08 GLY ? GO:0005507 ... Q9XAL8 37926680
    802223 8u8t:A (2.9) BS09 CU ? GO:0005507 ... Q9XAL8 37926680
    802224 8u8t:A (2.9) BS10 GLY ? GO:0005507 ... Q9XAL8 37926680
    802225 8u8t:B (2.9) BS01 GLY ? GO:0005507 ... Q9XAL8 37926680
    802226 8u8t:B (2.9) BS02 CU ? GO:0005507 ... Q9XAL8 37926680
    802227 8u8t:B (2.9) BS03 CU ? GO:0005507 ... Q9XAL8 37926680
    802228 8u8t:B (2.9) BS04 GLY ? GO:0005507 ... Q9XAL8 37926680
    802229 8u8t:B (2.9) BS05 GLY ? GO:0005507 ... Q9XAL8 37926680
    802230 8u8t:B (2.9) BS06 GLY ? GO:0005507 ... Q9XAL8 37926680
    802231 8u8t:B (2.9) BS07 GLY ? GO:0005507 ... Q9XAL8 37926680
    802232 8u8t:B (2.9) BS08 CU ? GO:0005507 ... Q9XAL8 37926680
    802233 8u8t:C (2.9) BS01 GLY ? GO:0005507 ... Q9XAL8 37926680
    802234 8u8t:C (2.9) BS02 CU ? GO:0005507 ... Q9XAL8 37926680
    802235 8u8t:C (2.9) BS03 CU ? GO:0005507 ... Q9XAL8 37926680
    802236 8u8t:C (2.9) BS04 CU ? GO:0005507 ... Q9XAL8 37926680
    802237 8u8t:C (2.9) BS05 CU ? GO:0005507 ... Q9XAL8 37926680
    802238 8u8t:C (2.9) BS06 GLY ? GO:0005507 ... Q9XAL8 37926680
    802239 8u8t:C (2.9) BS07 GLY ? GO:0005507 ... Q9XAL8 37926680
    802240 8u8t:C (2.9) BS08 GLY ? GO:0005507 ... Q9XAL8 37926680
    802241 8u8t:C (2.9) BS09 GLY ? GO:0005507 ... Q9XAL8 37926680
    802242 8u8t:C (2.9) BS10 GLY ? GO:0005507 ... Q9XAL8 37926680
    802243 8u8w:A (1.8) BS01 PYR 4.1.3.3 GO:0005737 ... A0A0H3FJT8 N/A
    802244 8u8y:A (2.1) BS01 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    802245 8u8y:A (2.1) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    802246 8u8y:B (2.1) BS01 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    802247 8u8y:B (2.1) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    802248 8u8y:C (2.1) BS01 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    802249 8u8y:C (2.1) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    802250 8u8y:D (2.1) BS01 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    802251 8u8y:D (2.1) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    802252 8u8y:E (2.1) BS01 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    802253 8u8y:E (2.1) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    802254 8u8y:F (2.1) BS01 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    802255 8u8y:F (2.1) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    802256 8u8y:G (2.1) BS01 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    802257 8u8y:G (2.1) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    802258 8u8y:H (2.1) BS01 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    802259 8u8y:H (2.1) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    802260 8u94:A (1.4) BS01 ADP 2.7.1.24 GO:0004140 ... A0A0H3FR62 N/A
    802261 8u96:A (1.5) BS01 ATP 2.7.1.24 GO:0004140 ... A0A0H3FR62 N/A
    802262 8u97:A (1.5) BS01 ANP 2.7.1.24 GO:0004140 ... A0A0H3FR62 N/A
    802263 8u98:A (1.4) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    802264 8u98:A (1.4) BS02 GLY 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    802265 8u98:A (1.4) BS03 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    802266 8u98:B (1.4) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    802267 8u98:B (1.4) BS02 GLY 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    802268 8u98:B (1.4) BS03 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    802269 8u98:C (1.4) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    802270 8u98:C (1.4) BS02 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    802271 8u98:C (1.4) BS03 GLY 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    802272 8u98:D (1.4) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    802273 8u98:D (1.4) BS02 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    802274 8u98:D (1.4) BS03 GLY 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    802275 8u99:A (1.8) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    802276 8u99:A (1.8) BS02 SER 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    802277 8u99:B (1.8) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    802278 8u99:B (1.8) BS02 SER 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    802279 8u9a:A (1.5) BS01 DBH 1.3.1.28 GO:0000166 ... A0A0H3FXS4 N/A
    802280 8u9a:A (1.5) BS02 DBH 1.3.1.28 GO:0000166 ... A0A0H3FXS4 N/A
    802281 8u9a:B (1.5) BS01 DBH 1.3.1.28 GO:0000166 ... A0A0H3FXS4 N/A
    802282 8u9e:B (3.02) BS01 PO4 N/A GO:0006520 ... A0A0D1HGG1 38782204
    802283 8u9f:A (1.08) BS01 MG ? GO:0004553 ... Q8A889 38879612
    802284 8u9j:A (2.02) BS01 FE N/A GO:0005506 ... Q96SZ5 38941563
    802285 8u9j:B (2.02) BS01 FE N/A GO:0005506 ... Q96SZ5 38941563
    802286 8uab:A (1.781) BS01 W28 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 38181791
    802287 8uac:A (1.4) BS01 W28 3.4.22.15 GO:0006508 ... P07711 38181791
    802288 8uac:B (1.4) BS01 W28 3.4.22.15 GO:0006508 ... P07711 38181791
    802289 8uaj:A (2.14) BS01 FMN N/A GO:0000166 ... E8PRF1 N/A
    802290 8uaj:B (2.14) BS01 FMN N/A GO:0000166 ... E8PRF1 N/A
    802291 8uaj:C (2.14) BS01 FMN N/A GO:0000166 ... E8PRF1 N/A
    802292 8uaj:D (2.14) BS01 FMN N/A GO:0000166 ... E8PRF1 N/A
    802293 8uak:A (2.82) BS01 W39 2.7.11.13 GO:0004672 ... P17252 38198520
    802294 8uan:A (1.99) BS01 CO N/A GO:0005506 ... Q96SZ5 38941563
    802295 8uap:A (2.5) BS01 W2T 2.7.11.16 GO:0004672 ... P34947 38016297
    802296 8uaq:A (2.8) BS01 W3F 2.7.11.16 GO:0004672 ... P34947 38016297
    802297 8uat:A (2.76) BS01 FMN N/A GO:0000166 ... E8PRF1 N/A
    802298 8uat:A (2.76) BS02 W3X N/A GO:0000166 ... E8PRF1 N/A
    802299 8uat:B (2.76) BS01 FMN N/A GO:0000166 ... E8PRF1 N/A
    802300 8uat:B (2.76) BS02 W3X N/A GO:0000166 ... E8PRF1 N/A
    802301 8uat:C (2.76) BS01 FMN N/A GO:0000166 ... E8PRF1 N/A
    802302 8uat:D (2.76) BS01 FMN N/A GO:0000166 ... E8PRF1 N/A
    802303 8uat:E (2.76) BS01 FMN N/A GO:0000166 ... E8PRF1 N/A
    802304 8uat:E (2.76) BS02 W3X N/A GO:0000166 ... E8PRF1 N/A
    802305 8uat:F (2.76) BS01 FMN N/A GO:0000166 ... E8PRF1 N/A
    802306 8uat:F (2.76) BS02 W3X N/A GO:0000166 ... E8PRF1 N/A
    802307 8uat:G (2.76) BS01 FMN N/A GO:0000166 ... E8PRF1 N/A
    802308 8uat:H (2.76) BS01 FMN N/A GO:0000166 ... E8PRF1 N/A
    802309 8ubr:A (2.7) BS01 MG 5.6.1.6 GO:0005254 ... P13569 38422021
    802310 8ubr:A (2.7) BS02 ATP 5.6.1.6 GO:0005254 ... P13569 38422021
    802311 8ubr:A (2.7) BS03 ATP 5.6.1.6 GO:0005254 ... P13569 38422021
    802312 8ubr:A (2.7) BS04 LBN 5.6.1.6 GO:0005254 ... P13569 38422021
    802313 8ubr:A (2.7) BS05 CLR 5.6.1.6 GO:0005254 ... P13569 38422021
    802314 8ubr:A (2.7) BS06 WG5 5.6.1.6 GO:0005254 ... P13569 38422021
    802315 8ubr:A (2.7) BS07 MG 5.6.1.6 GO:0005254 ... P13569 38422021
    802316 8ubw:A (2.59) BS01 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    802317 8ubw:A (2.59) BS02 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    802318 8ubw:A (2.59) BS03 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    802319 8ubw:A (2.59) BS04 CHT ? GO:0001568 ... Q9Y5Y0 38693265
    802320 8ubx:A (2.5) BS01 ETA ? GO:0001568 ... Q9Y5Y0 38693265
    802321 8ubx:A (2.5) BS02 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    802322 8ubx:A (2.5) BS03 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    802323 8ubx:A (2.5) BS04 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    802324 8uby:A (2.67) BS01 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    802325 8uby:A (2.67) BS02 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    802326 8uby:A (2.67) BS03 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    802327 8uby:A (2.67) BS04 CHT ? GO:0001568 ... Q9Y5Y0 38693265
    802328 8ubz:A (3.02) BS01 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    802329 8ubz:A (3.02) BS02 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    802330 8ubz:A (3.02) BS03 CHT ? GO:0001568 ... Q9Y5Y0 38693265
    802331 8uc0:A (2.42) BS01 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    802332 8uc0:A (2.42) BS02 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    802333 8uc2:A (1.6) BS01 BEZ 1.13.12.19
    1.14.20.7
    GO:0009693 ... P32021 38577885
    802334 8uc2:A (1.6) BS02 CA 1.13.12.19
    1.14.20.7
    GO:0009693 ... P32021 38577885
    802335 8uc3:A (2.78) BS01 FMN 1.3.3.13 GO:0016491 ... Q8GED9 38678027
    802336 8uc3:A (2.78) BS02 FMN 1.3.3.13 GO:0016491 ... Q8GED9 38678027
    802337 8uc3:B (2.78) BS01 FMN 1.3.3.13 GO:0016491 ... Q8GED9 38678027
    802338 8uc3:B (2.78) BS02 FMN 1.3.3.13 GO:0016491 ... Q8GED9 38678027
    802339 8uc9:A (2.44) BS01 QBC ? GO:0005085 ... Q07890 38156904
    802340 8ucd:A (3.0) BS01 LBN ? GO:0005515 ... Q9UHE8 37861452
    802341 8ucd:A (3.0) BS02 FAD ? GO:0005515 ... Q9UHE8 37861452
    802342 8ucd:A (3.0) BS03 LBN ? GO:0005515 ... Q9UHE8 37861452
    802343 8ucd:A (3.0) BS04 HEM ? GO:0005515 ... Q9UHE8 37861452
    802344 8ucd:B (3.0) BS01 LBN ? GO:0005515 ... Q9UHE8 37861452
    802345 8ucd:B (3.0) BS02 FAD ? GO:0005515 ... Q9UHE8 37861452
    802346 8ucd:B (3.0) BS03 HEM ? GO:0005515 ... Q9UHE8 37861452
    802347 8ucd:C (3.0) BS01 LBN ? GO:0005515 ... Q9UHE8 37861452
    802348 8ucd:C (3.0) BS02 LBN ? GO:0005515 ... Q9UHE8 37861452
    802349 8ucd:C (3.0) BS03 FAD ? GO:0005515 ... Q9UHE8 37861452
    802350 8ucd:C (3.0) BS04 HEM ? GO:0005515 ... Q9UHE8 37861452
    802351 8uce:A (2.12) BS01 AMP ? GO:0005524 ... A0A075LQ94 38421610
    802352 8uce:A (2.12) BS02 MG ? GO:0005524 ... A0A075LQ94 38421610
    802353 8uce:B (2.12) BS01 AMP ? GO:0005524 ... A0A075LQ94 38421610
    802354 8uce:B (2.12) BS02 MG ? GO:0005524 ... A0A075LQ94 38421610
    802355 8ucf:A (1.9) BS01 MG 6.5.1.3 GO:0005524 ... A0A075LQ94 38421610
    802356 8ucg:A (1.86) BS01 MG 6.5.1.3 GO:0005524 ... A0A075LQ94 38421610
    802357 8ucg:A (1.86) BS02 MG 6.5.1.3 GO:0005524 ... A0A075LQ94 38421610
    802358 8ucg:A (1.86) BS03 MG 6.5.1.3 GO:0005524 ... A0A075LQ94 38421610
    802359 8ucg:B (1.86) BS01 MG 6.5.1.3 GO:0005524 ... A0A075LQ94 38421610
    802360 8ucg:B (1.86) BS02 MG 6.5.1.3 GO:0005524 ... A0A075LQ94 38421610
    802361 8uch:A (2.14) BS01 ATP 6.5.1.3 GO:0005524 ... A0A075LQ94 38421610
    802362 8uch:A (2.14) BS02 MG 6.5.1.3 GO:0005524 ... A0A075LQ94 38421610
    802363 8uch:A (2.14) BS03 MG 6.5.1.3 GO:0005524 ... A0A075LQ94 38421610
    802364 8uci:A (2.14) BS01 AMP 6.5.1.3 GO:0005524 ... A0A075LQ94 38421610
    802365 8uci:A (2.14) BS02 MG 6.5.1.3 GO:0005524 ... A0A075LQ94 38421610
    802366 8uci:B (2.14) BS01 AMP 6.5.1.3 GO:0005524 ... A0A075LQ94 38421610
    802367 8uci:B (2.14) BS02 MG 6.5.1.3 GO:0005524 ... A0A075LQ94 38421610
    802368 8uct:A (2.93) BS01 3YT 2.7.11.1 GO:0004672 ... D6WMX4 N/A
    802369 8ucu:A (2.85) BS01 dna 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    802370 8ucu:A (2.85) BS02 dna 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    802371 8ucu:A (2.85) BS03 DGT 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    802372 8ucu:A (2.85) BS04 MG 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    802373 8ucv:A (3.81) BS01 dna 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    802374 8ucv:A (3.81) BS02 dna 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    802375 8ucv:A (3.81) BS03 DGT 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    802376 8ucv:A (3.81) BS04 MG 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    802377 8ucv:B (3.81) BS01 dna ? GO:0003677 ... A0A1L8G3G3 38491139
    802378 8ucv:B (3.81) BS02 dna ? GO:0003677 ... A0A1L8G3G3 38491139
    802379 8ucv:B (3.81) BS03 SF4 ? GO:0003677 ... A0A1L8G3G3 38491139
    802380 8ucw:A (3.64) BS01 dna 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    802381 8ucw:A (3.64) BS02 dna 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    802382 8ucw:A (3.64) BS03 DGT 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    802383 8ucw:A (3.64) BS04 MG 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    802384 8ucx:A (1.57) BS01 MN 1.5.1.3 GO:0004146 ... P0ABQ4 N/A
    802385 8ud1:1B (2.1) BS01 SF4 N/A GO:0046872 ... A0A4X1VVS8 38811722
    802386 8ud1:1E (2.1) BS01 FES N/A GO:0005739 ... A0A4X1VRV3 38811722
    802387 8ud1:1F (2.1) BS01 FMN N/A GO:0005739 ... A0A4X1SZP7 38811722
    802388 8ud1:1F (2.1) BS02 SF4 N/A GO:0005739 ... A0A4X1SZP7 38811722
    802389 8ud1:1G (2.1) BS01 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    802390 8ud1:1G (2.1) BS02 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    802391 8ud1:1G (2.1) BS03 FES N/A GO:0005743 ... A0A287ARY3 38811722
    802392 8ud1:1I (2.1) BS01 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    802393 8ud1:1I (2.1) BS02 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    802394 8ud1:1O (2.1) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    802395 8ud1:1P (2.1) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    802396 8ud1:1R (2.1) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    802397 8ud1:1U (2.1) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    802398 8ud1:1W (2.1) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722
    802399 8ud1:1d (2.1) BS01 AME N/A GO:0005737 ... A0A480JRW3 38811722
    802400 8ud1:1h (2.1) BS01 AME N/A GO:0005654 ... F1SGC6 38811722

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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