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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    795401 8si4:A (2.46) BS01 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795402 8si4:A (2.46) BS02 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795403 8si4:A (2.46) BS03 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795404 8si4:A (2.46) BS04 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795405 8si4:B (2.46) BS01 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795406 8si4:B (2.46) BS02 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795407 8si4:B (2.46) BS03 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795408 8si4:B (2.46) BS04 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795409 8si4:C (2.46) BS01 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795410 8si4:C (2.46) BS02 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795411 8si4:C (2.46) BS03 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795412 8si4:C (2.46) BS04 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795413 8si4:D (2.46) BS01 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795414 8si4:D (2.46) BS02 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795415 8si4:D (2.46) BS03 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795416 8si4:D (2.46) BS04 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795417 8si5:A (2.17) BS01 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795418 8si5:A (2.17) BS02 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795419 8si5:A (2.17) BS03 ZY8 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795420 8si5:A (2.17) BS04 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795421 8si5:A (2.17) BS05 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795422 8si5:B (2.17) BS01 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795423 8si5:B (2.17) BS02 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795424 8si5:B (2.17) BS03 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795425 8si5:B (2.17) BS04 ZY8 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795426 8si5:B (2.17) BS05 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795427 8si5:C (2.17) BS01 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795428 8si5:C (2.17) BS02 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795429 8si5:C (2.17) BS03 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795430 8si5:C (2.17) BS04 ZY8 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795431 8si5:C (2.17) BS05 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795432 8si5:D (2.17) BS01 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795433 8si5:D (2.17) BS02 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795434 8si5:D (2.17) BS03 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795435 8si5:D (2.17) BS04 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795436 8si5:D (2.17) BS05 ZY8 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795437 8si6:A (2.44) BS01 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795438 8si6:A (2.44) BS02 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795439 8si6:A (2.44) BS03 ZY8 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795440 8si6:B (2.44) BS01 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795441 8si6:B (2.44) BS02 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795442 8si6:B (2.44) BS03 ZY8 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795443 8si6:B (2.44) BS04 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795444 8si6:C (2.44) BS01 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795445 8si6:C (2.44) BS02 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795446 8si6:C (2.44) BS03 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795447 8si6:C (2.44) BS04 ZY8 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795448 8si6:C (2.44) BS05 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795449 8si6:D (2.44) BS01 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795450 8si6:D (2.44) BS02 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795451 8si6:D (2.44) BS03 ZY8 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795452 8si7:A (2.59) BS01 3FD 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795453 8si7:A (2.59) BS02 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795454 8si7:A (2.59) BS03 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795455 8si7:A (2.59) BS04 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795456 8si7:B (2.59) BS01 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795457 8si7:B (2.59) BS02 3FD 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795458 8si7:B (2.59) BS03 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795459 8si7:B (2.59) BS04 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795460 8si7:B (2.59) BS05 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795461 8si7:C (2.59) BS01 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795462 8si7:C (2.59) BS02 3FD 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795463 8si7:C (2.59) BS03 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795464 8si7:C (2.59) BS04 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795465 8si7:C (2.59) BS05 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795466 8si7:D (2.59) BS01 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795467 8si7:D (2.59) BS02 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795468 8si7:D (2.59) BS03 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795469 8si7:D (2.59) BS04 3FD 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795470 8si7:D (2.59) BS05 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795471 8si8:A (2.99) BS01 3FD 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795472 8si8:A (2.99) BS02 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795473 8si8:A (2.99) BS03 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795474 8si8:A (2.99) BS04 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795475 8si8:A (2.99) BS05 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795476 8si8:B (2.99) BS01 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795477 8si8:B (2.99) BS02 3FD 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795478 8si8:B (2.99) BS03 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795479 8si8:B (2.99) BS04 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795480 8si8:B (2.99) BS05 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795481 8si8:C (2.99) BS01 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795482 8si8:C (2.99) BS02 3FD 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795483 8si8:C (2.99) BS03 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795484 8si8:C (2.99) BS04 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795485 8si8:C (2.99) BS05 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795486 8si8:D (2.99) BS01 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795487 8si8:D (2.99) BS02 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795488 8si8:D (2.99) BS03 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795489 8si8:D (2.99) BS04 3FD 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795490 8si8:D (2.99) BS05 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795491 8si9:A (2.98) BS01 Y4B ? GO:0004888 ... P47870 37607940
    795492 8si9:A (2.98) BS02 ABU ? GO:0004888 ... P47870 37607940
    795493 8si9:B (2.98) BS01 Y4B ? GO:0004888 ... P14867 37607940
    795494 8si9:B (2.98) BS02 ABU ? GO:0004888 ... P14867 37607940
    795495 8si9:C (2.98) BS01 ABU ? GO:0004888 ... P47870 37607940
    795496 8si9:C (2.98) BS02 Y4B ? GO:0004888 ... P47870 37607940
    795497 8si9:D (2.98) BS01 ABU ? GO:0004888 ... P14867 37607940
    795498 8si9:D (2.98) BS02 Y4B ? GO:0004888 ... P14867 37607940
    795499 8si9:E (2.98) BS01 MAN ? GO:0004888 ... P18507 37607940
    795500 8sia:A (2.91) BS01 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795501 8sia:A (2.91) BS02 6RA 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795502 8sia:A (2.91) BS03 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795503 8sia:A (2.91) BS04 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795504 8sia:B (2.91) BS01 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795505 8sia:B (2.91) BS02 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795506 8sia:B (2.91) BS03 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795507 8sia:B (2.91) BS04 6RA 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795508 8sia:B (2.91) BS05 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795509 8sia:C (2.91) BS01 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795510 8sia:C (2.91) BS02 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795511 8sia:C (2.91) BS03 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795512 8sia:C (2.91) BS04 6RA 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795513 8sia:C (2.91) BS05 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795514 8sia:D (2.91) BS01 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795515 8sia:D (2.91) BS02 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795516 8sia:D (2.91) BS03 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795517 8sia:D (2.91) BS04 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795518 8sia:D (2.91) BS05 6RA 2.7.11.1 GO:0005216 ... Q923J1 37156763
    795519 8sid:A (2.71) BS01 ABU ? GO:0004888 ... P47870 37607940
    795520 8sid:B (2.71) BS01 ABU ? GO:0004888 ... P14867 37607940
    795521 8sid:C (2.71) BS01 ABU ? GO:0004888 ... P47870 37607940
    795522 8sid:C (2.71) BS02 Q3G ? GO:0004888 ... P47870 37607940
    795523 8sid:D (2.71) BS01 ABU ? GO:0004888 ... P14867 37607940
    795524 8sid:E (2.71) BS01 MAN ? GO:0004888 ... P18507 37607940
    795525 8sie:C (2.7) BS01 CLR ? GO:0005886 ... I3L8V6 38184688
    795526 8sie:C (2.7) BS02 CLR ? GO:0005886 ... I3L8V6 38184688
    795527 8sie:C (2.7) BS03 CLR ? GO:0005886 ... I3L8V6 38184688
    795528 8sie:C (2.7) BS04 CLR ? GO:0005886 ... I3L8V6 38184688
    795529 8sie:C (2.7) BS05 LBN ? GO:0005886 ... I3L8V6 38184688
    795530 8sie:C (2.7) BS06 CLR ? GO:0005886 ... I3L8V6 38184688
    795531 8sie:C (2.7) BS07 BCT ? GO:0005886 ... I3L8V6 38184688
    795532 8sie:C (2.7) BS08 BCT ? GO:0005886 ... I3L8V6 38184688
    795533 8sie:C (2.7) BS09 AV0 ? GO:0005886 ... I3L8V6 38184688
    795534 8sie:D (2.7) BS01 CLR ? GO:0005886 ... I3L8V6 38184688
    795535 8sie:D (2.7) BS02 CLR ? GO:0005886 ... I3L8V6 38184688
    795536 8sie:D (2.7) BS03 CLR ? GO:0005886 ... I3L8V6 38184688
    795537 8sie:D (2.7) BS04 CLR ? GO:0005886 ... I3L8V6 38184688
    795538 8sie:D (2.7) BS05 CLR ? GO:0005886 ... I3L8V6 38184688
    795539 8sie:D (2.7) BS06 LBN ? GO:0005886 ... I3L8V6 38184688
    795540 8sie:D (2.7) BS07 BCT ? GO:0005886 ... I3L8V6 38184688
    795541 8sie:D (2.7) BS08 BCT ? GO:0005886 ... I3L8V6 38184688
    795542 8sie:D (2.7) BS09 AV0 ? GO:0005886 ... I3L8V6 38184688
    795543 8sif:A (1.7) BS01 ZX4 N/A GO:0000287 ... P26281 N/A
    795544 8sig:A (1.78) BS01 GWU 2.1.1.319 GO:0016274 ... Q86X55 N/A
    795545 8sih:A (2.35) BS01 I1K 2.1.1.319 GO:0016274 ... Q86X55 N/A
    795546 8sih:A (2.35) BS02 CA 2.1.1.319 GO:0016274 ... Q86X55 N/A
    795547 8sij:A (2.6) BS01 PLP N/A GO:0006520 ... N/A 37633277
    795548 8sij:B (2.6) BS01 K9E N/A GO:0006520 ... N/A 37633277
    795549 8sik:B (2.9) BS01 CA ? GO:0000086 ... P0DP23 37192161
    795550 8sik:F (2.9) BS01 CA ? GO:0000086 ... P0DP23 37192161
    795551 8sik:H (2.9) BS01 CA ? GO:0000086 ... P0DP23 37192161
    795552 8sim:B (6.2) BS01 CA ? GO:0000086 ... P0DP23 37192161
    795553 8sim:B (6.2) BS02 CA ? GO:0000086 ... P0DP23 37192161
    795554 8sim:D (6.2) BS01 CA ? GO:0000086 ... P0DP23 37192161
    795555 8sim:D (6.2) BS02 CA ? GO:0000086 ... P0DP23 37192161
    795556 8sim:F (6.2) BS01 CA ? GO:0000086 ... P0DP23 37192161
    795557 8sim:F (6.2) BS02 CA ? GO:0000086 ... P0DP23 37192161
    795558 8sim:H (6.2) BS01 CA ? GO:0000086 ... P0DP23 37192161
    795559 8sim:H (6.2) BS02 CA ? GO:0000086 ... P0DP23 37192161
    795560 8sio:A (2.2) BS01 GXF 2.1.1.319 GO:0016274 ... O60678 N/A
    795561 8sio:B (2.2) BS01 GXF 2.1.1.319 GO:0016274 ... O60678 N/A
    795562 8siv:A (1.759) BS01 ZXH 2.7.11.1 GO:0000077 ... O14757 37861679
    795563 8siw:A (1.877) BS01 ZXL 2.7.11.1 GO:0000077 ... O14757 37861679
    795564 8siw:B (1.877) BS01 ZXL 2.7.11.1 GO:0000077 ... O14757 37861679
    795565 8six:A (1.55) BS01 ZXP 2.7.11.1 GO:0000077 ... O14757 37861679
    795566 8siy:A (2.9) BS01 peptide ? GO:0000775 ... A0A140UHX1 37551430
    795567 8siy:C (2.9) BS01 dna ? GO:0000786 ... P84233 37551430
    795568 8siy:C (2.9) BS02 dna ? GO:0000786 ... P84233 37551430
    795569 8siy:D (2.9) BS01 dna ? GO:0000786 ... P62799 37551430
    795570 8siy:D (2.9) BS02 dna ? GO:0000786 ... P62799 37551430
    795571 8siy:E (2.9) BS01 dna ? GO:0000786 ... P06897 37551430
    795572 8siy:E (2.9) BS02 dna ? GO:0000786 ... P06897 37551430
    795573 8siy:F (2.9) BS01 dna ? GO:0000786 ... P02281 37551430
    795574 8siy:F (2.9) BS02 dna ? GO:0000786 ... P02281 37551430
    795575 8siy:G (2.9) BS01 dna ? GO:0000786 ... P84233 37551430
    795576 8siy:G (2.9) BS02 dna ? GO:0000786 ... P84233 37551430
    795577 8siy:H (2.9) BS01 dna ? GO:0000786 ... P62799 37551430
    795578 8siy:H (2.9) BS02 dna ? GO:0000786 ... P62799 37551430
    795579 8siy:I (2.9) BS01 dna ? GO:0000786 ... P06897 37551430
    795580 8siy:I (2.9) BS02 dna ? GO:0000786 ... P06897 37551430
    795581 8siy:J (2.9) BS01 dna ? GO:0000786 ... P02281 37551430
    795582 8siy:J (2.9) BS02 dna ? GO:0000786 ... P02281 37551430
    795583 8sj7:A (2.09) BS01 rna ? GO:0003723 ... Q09312 37953271
    795584 8sjb:A (1.74) BS01 CA N/A GO:0002523 ... P05109 N/A
    795585 8sjb:A (1.74) BS02 CA N/A GO:0002523 ... P05109 N/A
    795586 8sjb:A (1.74) BS03 ZN N/A GO:0002523 ... P05109 N/A
    795587 8sjb:B (1.74) BS01 CA N/A GO:0002523 ... P05109 N/A
    795588 8sjb:B (1.74) BS02 CA N/A GO:0002523 ... P05109 N/A
    795589 8sjc:A (1.87) BS01 CA N/A GO:0002523 ... P05109 N/A
    795590 8sjc:A (1.87) BS02 CA N/A GO:0002523 ... P05109 N/A
    795591 8sjc:A (1.87) BS03 ZN N/A GO:0002523 ... P05109 N/A
    795592 8sjc:B (1.87) BS01 MG N/A GO:0002523 ... P05109 N/A
    795593 8sjc:B (1.87) BS02 CA N/A GO:0002523 ... P05109 N/A
    795594 8sjc:B (1.87) BS03 ZN N/A GO:0002523 ... P05109 N/A
    795595 8sjc:C (1.87) BS01 MG N/A GO:0002523 ... P06702 N/A
    795596 8sjc:C (1.87) BS02 CA N/A GO:0002523 ... P06702 N/A
    795597 8sjc:C (1.87) BS03 ZN N/A GO:0002523 ... P06702 N/A
    795598 8sjc:D (1.87) BS01 CA N/A GO:0002523 ... P06702 N/A
    795599 8sjc:D (1.87) BS02 CA N/A GO:0002523 ... P06702 N/A
    795600 8sjc:D (1.87) BS03 ZN N/A GO:0002523 ... P06702 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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