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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    793801 8scb:V (2.5) BS02 MG ? GO:0000122 ... G1T6D1 38172604
    793802 8scb:W (2.5) BS01 rna ? GO:0000027 ... G1SE28 38172604
    793803 8scb:WW (2.5) BS01 rna ? GO:0003735 ... G1TG89 38172604
    793804 8scb:X (2.5) BS01 rna ? GO:0000027 ... G1SE76 38172604
    793805 8scb:X (2.5) BS02 rna ? GO:0000027 ... G1SE76 38172604
    793806 8scb:XX (2.5) BS01 rna ? GO:0003735 ... G1SZ47 38172604
    793807 8scb:Y (2.5) BS01 rna ? GO:0002181 ... G1SQH0 38172604
    793808 8scb:Y (2.5) BS02 rna ? GO:0002181 ... G1SQH0 38172604
    793809 8scb:YY (2.5) BS01 rna ? GO:0003735 ... G1T3D8 38172604
    793810 8scb:Z (2.5) BS01 rna ? GO:0003735 ... G1TXF6 38172604
    793811 8scb:ZZ (2.5) BS01 rna ? GO:0003735 ... G1TDB3 38172604
    793812 8scb:a (2.5) BS01 rna ? GO:0003735 ... G1SNY0 38172604
    793813 8scb:aa (2.5) BS01 rna ? GO:0003729 ... G1TFE8 38172604
    793814 8scb:aa (2.5) BS02 ZN ? GO:0003729 ... G1TFE8 38172604
    793815 8scb:b (2.5) BS01 rna ? GO:0002181 ... G1SGR6 38172604
    793816 8scb:bb (2.5) BS01 rna ? GO:0000028 ... G1TZ76 38172604
    793817 8scb:c (2.5) BS01 rna ? GO:0002181 ... G1TDL2 38172604
    793818 8scb:cc (2.5) BS01 rna ? GO:0000028 ... G1TIB4 38172604
    793819 8scb:d (2.5) BS01 rna ? GO:0002181 ... G1SHG0 38172604
    793820 8scb:dd (2.5) BS01 rna ? GO:0003735 ... G1U7M4 38172604
    793821 8scb:dd (2.5) BS02 ZN ? GO:0003735 ... G1U7M4 38172604
    793822 8scb:e (2.5) BS01 rna ? GO:0003735 ... G1TUN8 38172604
    793823 8scb:e (2.5) BS02 MG ? GO:0003735 ... G1TUN8 38172604
    793824 8scb:ee (2.5) BS01 rna ? GO:0003735 ... G1T8A2 38172604
    793825 8scb:f (2.5) BS01 rna ? GO:0000049 ... G1SF08 38172604
    793826 8scb:f (2.5) BS02 MG ? GO:0000049 ... G1SF08 38172604
    793827 8scb:ff (2.5) BS01 rna ? GO:0003723 ... G1SK22 38172604
    793828 8scb:ff (2.5) BS02 ZN ? GO:0003723 ... G1SK22 38172604
    793829 8scb:g (2.5) BS01 rna ? GO:0003735 ... G1TXG5 38172604
    793830 8scb:g (2.5) BS02 ZN ? GO:0003735 ... G1TXG5 38172604
    793831 8scb:g (2.5) BS03 MG ? GO:0003735 ... G1TXG5 38172604
    793832 8scb:gg (2.5) BS01 rna ? GO:0001891 ... G1SJB4 38172604
    793833 8scb:h (2.5) BS01 rna ? GO:0000463 ... G1SIT5 38172604
    793834 8scb:h (2.5) BS02 rna ? GO:0000463 ... G1SIT5 38172604
    793835 8scb:i (2.5) BS01 rna ? GO:0002181 ... G1TTQ5 38172604
    793836 8scb:ii (2.5) BS01 rna ? GO:0000184 ... P62495 38172604
    793837 8scb:ii (2.5) BS02 rna ? GO:0000184 ... P62495 38172604
    793838 8scb:ii (2.5) BS03 rna ? GO:0000184 ... P62495 38172604
    793839 8scb:ii (2.5) BS04 rna ? GO:0000184 ... P62495 38172604
    793840 8scb:ii (2.5) BS05 ZVM ? GO:0000184 ... P62495 38172604
    793841 8scb:j (2.5) BS01 rna ? GO:0003723 ... U3KPD5 38172604
    793842 8scb:j (2.5) BS02 rna ? GO:0003723 ... U3KPD5 38172604
    793843 8scb:j (2.5) BS03 ZN ? GO:0003723 ... U3KPD5 38172604
    793844 8scb:jj (2.5) BS01 rna ? GO:0000054 ... G1SG72 38172604
    793845 8scb:jj (2.5) BS02 rna ? GO:0000054 ... G1SG72 38172604
    793846 8scb:jj (2.5) BS03 SF4 ? GO:0000054 ... G1SG72 38172604
    793847 8scb:jj (2.5) BS04 SF4 ? GO:0000054 ... G1SG72 38172604
    793848 8scb:k (2.5) BS01 rna ? GO:0003735 ... G1U001 38172604
    793849 8scb:l (2.5) BS01 rna ? GO:0003735 ... G1TTN1 38172604
    793850 8scb:l (2.5) BS02 rna ? GO:0003735 ... G1TTN1 38172604
    793851 8scb:m (2.5) BS01 rna ? GO:0003735 ... A0A2K5PSA0 38172604
    793852 8scb:m (2.5) BS02 ZN ? GO:0003735 ... A0A2K5PSA0 38172604
    793853 8scb:o (2.5) BS01 rna ? GO:0003735 ... G1T040 38172604
    793854 8scb:o (2.5) BS02 rna ? GO:0003735 ... G1T040 38172604
    793855 8scb:o (2.5) BS03 ZN ? GO:0003735 ... G1T040 38172604
    793856 8scb:p (2.5) BS01 rna ? GO:0003735 ... G1SY53 38172604
    793857 8scb:p (2.5) BS02 ZN ? GO:0003735 ... G1SY53 38172604
    793858 8scb:r (2.5) BS01 rna ? GO:0003735 ... G1U7L1 38172604
    793859 8scb:s (2.5) BS01 rna ? GO:0000027 ... G1SPK4 38172604
    793860 8scb:t (2.5) BS01 rna ? GO:0003723 ... G1SMR7 38172604
    793861 8scd:A (2.06) BS01 XHP 2.5.1.15 GO:0004156 ... Q8GJ22 37419898
    793862 8scd:A (2.06) BS02 PAB 2.5.1.15 GO:0004156 ... Q8GJ22 37419898
    793863 8scd:A (2.06) BS03 POP 2.5.1.15 GO:0004156 ... Q8GJ22 37419898
    793864 8scg:A (2.0) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793865 8scg:A (2.0) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793866 8scg:A (2.0) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    793867 8scg:A (2.0) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    793868 8scg:D (2.0) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793869 8scg:D (2.0) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793870 8scg:D (2.0) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    793871 8scg:D (2.0) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    793872 8sci:A (2.67) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793873 8sci:A (2.67) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793874 8sci:A (2.67) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    793875 8sci:A (2.67) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    793876 8sci:D (2.67) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793877 8sci:D (2.67) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793878 8sci:D (2.67) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    793879 8sci:D (2.67) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    793880 8scj:A (2.68) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793881 8scj:A (2.68) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793882 8scj:A (2.68) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    793883 8scj:A (2.68) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    793884 8scj:D (2.68) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793885 8scj:D (2.68) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793886 8scj:D (2.68) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    793887 8scj:D (2.68) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    793888 8sck:A (2.3) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793889 8sck:A (2.3) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793890 8sck:A (2.3) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    793891 8sck:A (2.3) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    793892 8sck:D (2.3) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793893 8sck:D (2.3) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793894 8sck:D (2.3) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    793895 8sck:D (2.3) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    793896 8scl:A (2.44) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793897 8scl:A (2.44) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793898 8scl:A (2.44) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    793899 8scl:A (2.44) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    793900 8scl:D (2.44) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793901 8scl:D (2.44) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793902 8scl:D (2.44) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    793903 8scl:D (2.44) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    793904 8scm:A (2.3) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793905 8scm:A (2.3) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793906 8scm:A (2.3) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    793907 8scm:A (2.3) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    793908 8scm:D (2.3) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793909 8scm:D (2.3) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793910 8scm:D (2.3) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    793911 8scm:D (2.3) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    793912 8scn:A (2.3) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793913 8scn:A (2.3) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793914 8scn:A (2.3) BS03 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    793915 8scn:D (2.3) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793916 8scn:D (2.3) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793917 8scn:D (2.3) BS03 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    793918 8sco:A (1.92) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793919 8sco:A (1.92) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793920 8sco:A (1.92) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    793921 8sco:A (1.92) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    793922 8sco:D (1.92) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793923 8sco:D (1.92) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793924 8sco:D (1.92) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    793925 8sco:D (1.92) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    793926 8scp:A (2.08) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793927 8scp:A (2.08) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793928 8scp:A (2.08) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    793929 8scp:A (2.08) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    793930 8scp:D (2.08) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793931 8scp:D (2.08) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793932 8scp:D (2.08) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    793933 8scp:D (2.08) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    793934 8scq:A (2.18) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793935 8scq:A (2.18) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793936 8scq:A (2.18) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    793937 8scq:A (2.18) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    793938 8scq:D (2.18) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793939 8scq:D (2.18) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793940 8scq:D (2.18) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    793941 8scq:D (2.18) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    793942 8scr:A (2.0) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793943 8scr:A (2.0) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793944 8scr:A (2.0) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    793945 8scr:A (2.0) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    793946 8scr:D (2.0) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793947 8scr:D (2.0) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793948 8scr:D (2.0) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    793949 8scr:D (2.0) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    793950 8scs:A (2.1) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793951 8scs:A (2.1) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793952 8scs:A (2.1) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    793953 8scs:A (2.1) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    793954 8scs:D (2.1) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793955 8scs:D (2.1) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793956 8scs:D (2.1) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    793957 8scs:D (2.1) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    793958 8sct:A (2.34) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793959 8sct:A (2.34) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793960 8sct:A (2.34) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    793961 8sct:A (2.34) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    793962 8sct:D (2.34) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793963 8sct:D (2.34) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793964 8sct:D (2.34) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    793965 8sct:D (2.34) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    793966 8scu:A (2.38) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793967 8scu:A (2.38) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793968 8scu:A (2.38) BS03 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    793969 8scu:D (2.38) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793970 8scu:D (2.38) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    793971 8scu:D (2.38) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    793972 8scu:D (2.38) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    793973 8scz:A (3.4) BS01 rna 3.6.4.13 GO:0002230 ... O95786 N/A
    793974 8scz:A (3.4) BS02 ZN 3.6.4.13 GO:0002230 ... O95786 N/A
    793975 8sd0:A (3.8) BS01 rna 3.6.4.13 GO:0002230 ... O95786 N/A
    793976 8sd0:A (3.8) BS02 ZN 3.6.4.13 GO:0002230 ... O95786 N/A
    793977 8sd1:A (1.298) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 38411550
    793978 8sd6:A (1.397) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 38411550
    793979 8sd7:A (1.704) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 38411550
    793980 8sd8:A (1.789) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 38411550
    793981 8sd9:A (1.904) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 38411550
    793982 8sdb:A (3.0) BS01 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    793983 8sdb:A (3.0) BS02 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    793984 8sdb:A (3.0) BS03 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    793985 8sdb:A (3.0) BS04 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    793986 8sdb:A (3.0) BS05 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    793987 8sdb:A (3.0) BS06 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    793988 8sdb:A (3.0) BS07 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    793989 8sdb:A (3.0) BS08 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    793990 8sdb:A (3.0) BS09 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    793991 8sdb:B (3.0) BS01 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    793992 8sdb:B (3.0) BS02 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    793993 8sdb:B (3.0) BS03 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    793994 8sdb:B (3.0) BS04 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    793995 8sdb:B (3.0) BS05 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    793996 8sdb:B (3.0) BS06 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    793997 8sdb:C (3.0) BS01 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    793998 8sdb:C (3.0) BS02 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    793999 8sdb:C (3.0) BS03 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    794000 8sdb:C (3.0) BS04 GLC 2.4.1.18 GO:0003824 ... P07762 37298853
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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