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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    45601 1s5l:D (3.5) BS05 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    45602 1s5l:D (3.5) BS06 BCT 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    45603 1s5l:D (3.5) BS07 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    45604 1s5l:D (3.5) BS08 PHO 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    45605 1s5l:D (3.5) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    45606 1s5l:E (3.5) BS01 HEC ? GO:0005506 ... Q8DIP0 14764885
    45607 1s5l:F (3.5) BS01 HEC ? GO:0005506 ... Q8DIN9 14764885
    45608 1s5l:H (3.5) BS01 CLA ? GO:0009523 ... Q8DJ43 14764885
    45609 1s5l:H (3.5) BS02 CLA ? GO:0009523 ... Q8DJ43 14764885
    45610 1s5l:H (3.5) BS03 CLA ? GO:0009523 ... Q8DJ43 14764885
    45611 1s5l:H (3.5) BS04 CLA ? GO:0009523 ... Q8DJ43 14764885
    45612 1s5l:K (3.5) BS01 CLA ? GO:0009523 ... Q9F1K9 14764885
    45613 1s5l:K (3.5) BS02 CLA ? GO:0009523 ... Q9F1K9 14764885
    45614 1s5l:M (3.5) BS01 CLA ? GO:0005737 ... Q8DHA7 14764885
    45615 1s5l:V (3.5) BS01 HEC ? GO:0005506 ... P0A386 14764885
    45616 1s5l:a (3.5) BS01 FE 1.10.3.9 GO:0005506 ... P0A444 14764885
    45617 1s5l:a (3.5) BS02 OEC 1.10.3.9 GO:0005506 ... P0A444 14764885
    45618 1s5l:a (3.5) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    45619 1s5l:a (3.5) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    45620 1s5l:a (3.5) BS05 PHO 1.10.3.9 GO:0005506 ... P0A444 14764885
    45621 1s5l:a (3.5) BS06 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    45622 1s5l:a (3.5) BS07 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    45623 1s5l:a (3.5) BS08 BCT 1.10.3.9 GO:0005506 ... P0A444 14764885
    45624 1s5l:a (3.5) BS09 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    45625 1s5l:a (3.5) BS10 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    45626 1s5l:a (3.5) BS11 PHO 1.10.3.9 GO:0005506 ... P0A444 14764885
    45627 1s5l:b (3.5) BS01 CLA ? GO:0009521 ... Q8DIQ1 14764885
    45628 1s5l:b (3.5) BS02 CLA ? GO:0009521 ... Q8DIQ1 14764885
    45629 1s5l:b (3.5) BS03 CLA ? GO:0009521 ... Q8DIQ1 14764885
    45630 1s5l:b (3.5) BS04 CLA ? GO:0009521 ... Q8DIQ1 14764885
    45631 1s5l:b (3.5) BS05 CLA ? GO:0009521 ... Q8DIQ1 14764885
    45632 1s5l:b (3.5) BS06 CLA ? GO:0009521 ... Q8DIQ1 14764885
    45633 1s5l:b (3.5) BS07 CLA ? GO:0009521 ... Q8DIQ1 14764885
    45634 1s5l:b (3.5) BS08 CLA ? GO:0009521 ... Q8DIQ1 14764885
    45635 1s5l:b (3.5) BS09 CLA ? GO:0009521 ... Q8DIQ1 14764885
    45636 1s5l:b (3.5) BS10 CLA ? GO:0009521 ... Q8DIQ1 14764885
    45637 1s5l:b (3.5) BS11 CLA ? GO:0009521 ... Q8DIQ1 14764885
    45638 1s5l:b (3.5) BS12 CLA ? GO:0009521 ... Q8DIQ1 14764885
    45639 1s5l:b (3.5) BS13 CLA ? GO:0009521 ... Q8DIQ1 14764885
    45640 1s5l:b (3.5) BS14 CLA ? GO:0009521 ... Q8DIQ1 14764885
    45641 1s5l:b (3.5) BS15 CLA ? GO:0009521 ... Q8DIQ1 14764885
    45642 1s5l:b (3.5) BS16 CLA ? GO:0009521 ... Q8DIQ1 14764885
    45643 1s5l:c (3.5) BS01 CLA ? GO:0005737 ... Q8DIF8 14764885
    45644 1s5l:c (3.5) BS02 CLA ? GO:0005737 ... Q8DIF8 14764885
    45645 1s5l:c (3.5) BS03 CLA ? GO:0005737 ... Q8DIF8 14764885
    45646 1s5l:c (3.5) BS04 CLA ? GO:0005737 ... Q8DIF8 14764885
    45647 1s5l:c (3.5) BS05 CLA ? GO:0005737 ... Q8DIF8 14764885
    45648 1s5l:c (3.5) BS06 CLA ? GO:0005737 ... Q8DIF8 14764885
    45649 1s5l:c (3.5) BS07 CLA ? GO:0005737 ... Q8DIF8 14764885
    45650 1s5l:c (3.5) BS08 CLA ? GO:0005737 ... Q8DIF8 14764885
    45651 1s5l:c (3.5) BS09 CLA ? GO:0005737 ... Q8DIF8 14764885
    45652 1s5l:c (3.5) BS10 CLA ? GO:0005737 ... Q8DIF8 14764885
    45653 1s5l:c (3.5) BS11 CLA ? GO:0005737 ... Q8DIF8 14764885
    45654 1s5l:c (3.5) BS12 CLA ? GO:0005737 ... Q8DIF8 14764885
    45655 1s5l:c (3.5) BS13 CLA ? GO:0005737 ... Q8DIF8 14764885
    45656 1s5l:c (3.5) BS14 CLA ? GO:0005737 ... Q8DIF8 14764885
    45657 1s5l:d (3.5) BS01 FE 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    45658 1s5l:d (3.5) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    45659 1s5l:d (3.5) BS03 PHO 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    45660 1s5l:d (3.5) BS04 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    45661 1s5l:d (3.5) BS05 BCT 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    45662 1s5l:d (3.5) BS06 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    45663 1s5l:d (3.5) BS07 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    45664 1s5l:d (3.5) BS08 PHO 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    45665 1s5l:d (3.5) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    45666 1s5l:e (3.5) BS01 HEC ? GO:0005506 ... Q8DIP0 14764885
    45667 1s5l:f (3.5) BS01 HEC ? GO:0005506 ... Q8DIN9 14764885
    45668 1s5l:h (3.5) BS01 CLA ? GO:0009523 ... Q8DJ43 14764885
    45669 1s5l:h (3.5) BS02 CLA ? GO:0009523 ... Q8DJ43 14764885
    45670 1s5l:h (3.5) BS03 CLA ? GO:0009523 ... Q8DJ43 14764885
    45671 1s5l:h (3.5) BS04 CLA ? GO:0009523 ... Q8DJ43 14764885
    45672 1s5l:i (3.5) BS01 CLA ? GO:0005737 ... Q8DJZ6 14764885
    45673 1s5l:k (3.5) BS01 CLA ? GO:0009523 ... Q9F1K9 14764885
    45674 1s5l:k (3.5) BS02 CLA ? GO:0009523 ... Q9F1K9 14764885
    45675 1s5l:m (3.5) BS01 CLA ? GO:0005737 ... Q8DHA7 14764885
    45676 1s5l:v (3.5) BS01 HEC ? GO:0005506 ... P0A386 14764885
    45677 1s5m:A (0.98) BS01 GLC 5.3.1.5 GO:0000287 ... P15587 15157080
    45678 1s5m:A (0.98) BS02 MN 5.3.1.5 GO:0000287 ... P15587 15157080
    45679 1s5m:A (0.98) BS03 MN 5.3.1.5 GO:0000287 ... P15587 15157080
    45680 1s5n:A (0.95) BS01 XYL 5.3.1.5 GO:0000287 ... P15587 15157080
    45681 1s5n:A (0.95) BS02 MN 5.3.1.5 GO:0000287 ... P15587 15157080
    45682 1s5n:A (0.95) BS03 MN 5.3.1.5 GO:0000287 ... P15587 15157080
    45683 1s5o:A (1.8) BS01 152 2.3.1.137
    2.3.1.7
    GO:0003997 ... P43155 15099582
    45684 1s5p:A (1.96) BS01 peptide 2.3.1.286 GO:0036054 ... P75960 15019790
    45685 1s5p:A (1.96) BS02 ZN 2.3.1.286 GO:0036054 ... P75960 15019790
    45686 1s5q:B (-1.00) BS01 peptide ? GO:0003714 ... Q60520 15235594
    45687 1s5r:B (-1.00) BS01 peptide ? GO:0003714 ... Q60520 15235594
    45688 1s5s:A (1.4) BS01 CA 3.4.21.4 GO:0004252 ... P00761 15005618
    45689 1s5s:A (1.4) BS02 PG3 3.4.21.4 GO:0004252 ... P00761 15005618
    45690 1s5x:A (2.4) BS01 HEM ? GO:0004601 ... P80043 15096204
    45691 1s5x:B (2.4) BS01 HEM ? GO:0004601 ... P80044 15096204
    45692 1s5y:A (2.5) BS01 HEM ? GO:0004601 ... P80043 15096204
    45693 1s5y:B (2.5) BS01 HEM ? GO:0004601 ... P80044 15096204
    45694 1s5y:C (2.5) BS01 HEM ? GO:0004601 ... P80043 15096204
    45695 1s5y:D (2.5) BS01 HEM ? GO:0004601 ... P80044 15096204
    45696 1s5z:A (2.0) BS01 SON 2.7.4.6 GO:0004550 ... P22887 16787337 PDBbind: -logKd/Ki=3.21, Kd=0.62mM
    45697 1s60:A (3.0) BS01 COA 2.3.1.82 GO:0006084 ... Q9R381 15123251
    45698 1s61:A (2.1) BS01 HEM ? GO:0005344 ... P9WN25 15016811
    45699 1s61:B (2.1) BS01 HEM ? GO:0005344 ... P9WN25 15016811
    45700 1s63:A (1.9) BS01 GLC 2.5.1.58
    2.5.1.59
    GO:0004659 ... P49354 15248757
    45701 1s63:A (1.9) BS02 FPP 2.5.1.58
    2.5.1.59
    GO:0004659 ... P49354 15248757 BindingDB: Kd=2.0nM
    45702 1s63:B (1.9) BS01 GLC 2.5.1.58 GO:0003824 ... P49356 15248757
    45703 1s63:B (1.9) BS02 FRU 2.5.1.58 GO:0003824 ... P49356 15248757
    45704 1s63:B (1.9) BS03 ZN 2.5.1.58 GO:0003824 ... P49356 15248757
    45705 1s63:B (1.9) BS04 FPP 2.5.1.58 GO:0003824 ... P49356 15248757
    45706 1s63:B (1.9) BS05 778 2.5.1.58 GO:0003824 ... P49356 15248757 MOAD: Ki=0.9nM
    PDBbind: -logKd/Ki=9.05, Ki=0.9nM
    BindingDB: IC50=2nM
    45707 1s64:B (2.55) BS01 ZN 2.5.1.59 GO:0003824 ... P53610 15248757
    45708 1s64:B (2.55) BS02 778 2.5.1.59 GO:0003824 ... P53610 15248757 PDBbind: -logKd/Ki=8.40, Ki=4nM
    45709 1s64:D (2.55) BS01 ZN 2.5.1.59 GO:0003824 ... P53610 15248757
    45710 1s64:D (2.55) BS02 778 2.5.1.59 GO:0003824 ... P53610 15248757
    45711 1s64:F (2.55) BS01 ZN 2.5.1.59 GO:0003824 ... P53610 15248757
    45712 1s64:F (2.55) BS02 778 2.5.1.59 GO:0003824 ... P53610 15248757
    45713 1s64:H (2.55) BS01 ZN 2.5.1.59 GO:0003824 ... P53610 15248757
    45714 1s64:H (2.55) BS02 778 2.5.1.59 GO:0003824 ... P53610 15248757
    45715 1s64:J (2.55) BS01 ZN 2.5.1.59 GO:0003824 ... P53610 15248757
    45716 1s64:J (2.55) BS02 778 2.5.1.59 GO:0003824 ... P53610 15248757
    45717 1s64:L (2.55) BS01 ZN 2.5.1.59 GO:0003824 ... P53610 15248757
    45718 1s64:L (2.55) BS02 778 2.5.1.59 GO:0003824 ... P53610 15248757
    45719 1s68:A (1.9) BS01 AMP 6.5.1.3 GO:0003972 ... P32277 14962393
    45720 1s69:A (1.68) BS01 CYN ? GO:0005344 ... P73925 15289104
    45721 1s69:A (1.68) BS02 HEM ? GO:0005344 ... P73925 15289104
    45722 1s6a:A (1.69) BS01 AZI ? GO:0005344 ... P73925 15289104
    45723 1s6a:A (1.69) BS02 HEM ? GO:0005344 ... P73925 15289104
    45724 1s6b:A (1.6) BS01 CA 3.1.1.4 GO:0004623 ... P60043 15828003
    45725 1s6b:B (1.6) BS01 CA 3.1.1.4 GO:0004623 ... P60044 15828003
    45726 1s6b:B (1.6) BS02 CA 3.1.1.4 GO:0004623 ... P60044 15828003
    45727 1s6c:A (2.0) BS01 peptide ? GO:0005509 ... Q8R426 14980206
    45728 1s6c:A (2.0) BS02 CA ? GO:0005509 ... Q8R426 14980206
    45729 1s6c:A (2.0) BS03 CA ? GO:0005509 ... Q8R426 14980206
    45730 1s6f:A (1.8) BS01 CA 3.4.21.4 GO:0004252 ... P00761 15005618
    45731 1s6f:A (1.8) BS02 SBP 3.4.21.4 GO:0004252 ... P00761 15005618
    45732 1s6f:A (1.8) BS03 EDO 3.4.21.4 GO:0004252 ... P00761 15005618
    45733 1s6f:A (1.8) BS04 EDO 3.4.21.4 GO:0004252 ... P00761 15005618
    45734 1s6f:A (1.8) BS05 EDO 3.4.21.4 GO:0004252 ... P00761 15005618
    45735 1s6h:A (1.45) BS01 CA 3.4.21.4 GO:0004252 ... P00761 15005618
    45736 1s6h:A (1.45) BS02 4BZ 3.4.21.4 GO:0004252 ... P00761 15005618
    45737 1s6i:A (-1.00) BS01 CA 2.7.11.1 GO:0005509 ... P28583 15155727
    45738 1s6i:A (-1.00) BS02 CA 2.7.11.1 GO:0005509 ... P28583 15155727
    45739 1s6i:A (-1.00) BS03 CA 2.7.11.1 GO:0005509 ... P28583 15155727
    45740 1s6i:A (-1.00) BS04 CA 2.7.11.1 GO:0005509 ... P28583 15155727
    45741 1s6j:A (-1.00) BS01 CA 2.7.11.1 GO:0005509 ... P28583 15568805
    45742 1s6j:A (-1.00) BS02 CA 2.7.11.1 GO:0005509 ... P28583 15568805
    45743 1s6p:A (2.9) BS01 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 15115397
    45744 1s6p:A (2.9) BS02 IET 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 15115397
    45745 1s6q:A (3.0) BS01 TPB 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 15115397
    45746 1s6r:A (2.24) BS01 IAP 3.5.2.6 GO:0008800 ... Q93CA2 14521155
    45747 1s6u:A (-1.00) BS01 CU1 7.2.2.8 GO:0046872 ... Q04656 15035611
    45748 1s6v:A (1.88) BS01 HEC 1.11.1.5 GO:0004601 ... P00431 15071191
    45749 1s6v:B (1.88) BS01 HEC ? GO:0005515 ... P00044 15071191
    45750 1s6v:C (1.88) BS01 HEC 1.11.1.5 GO:0004601 ... P00431 15071191
    45751 1s6v:D (1.88) BS01 HEC ? GO:0005515 ... P00044 15071191
    45752 1s70:A (2.7) BS01 MN 3.1.3.16
    3.1.3.53
    GO:0004721 ... P62207 15164081
    45753 1s70:A (2.7) BS02 MN 3.1.3.16
    3.1.3.53
    GO:0004721 ... P62207 15164081
    45754 1s72:1 (2.4) BS01 rna ? GO:0003723 ... P32410 15184028
    45755 1s72:2 (2.4) BS01 rna ? GO:0003735 ... P22452 15184028
    45756 1s72:3 (2.4) BS01 rna ? GO:0000049 ... P32411 15184028
    45757 1s72:3 (2.4) BS02 MG ? GO:0000049 ... P32411 15184028
    45758 1s72:A (2.4) BS01 rna ? GO:0002181 ... P20276 15184028
    45759 1s72:A (2.4) BS02 MG ? GO:0002181 ... P20276 15184028
    45760 1s72:B (2.4) BS01 rna ? GO:0003723 ... P20279 15184028
    45761 1s72:C (2.4) BS01 rna ? GO:0003723 ... P12735 15184028
    45762 1s72:D (2.4) BS01 rna ? GO:0000049 ... P14124 15184028
    45763 1s72:D (2.4) BS02 rna ? GO:0000049 ... P14124 15184028
    45764 1s72:E (2.4) BS01 rna ? GO:0002181 ... P14135 15184028
    45765 1s72:F (2.4) BS01 rna ? GO:0001682 ... P12743 15184028
    45766 1s72:H (2.4) BS01 rna ? GO:0000027 ... P60617 15184028
    45767 1s72:I (2.4) BS01 rna ? GO:0003735 ... P14122 15184028
    45768 1s72:J (2.4) BS01 rna ? GO:0003729 ... P29198 15184028
    45769 1s72:K (2.4) BS01 rna ? GO:0003735 ... P22450 15184028
    45770 1s72:L (2.4) BS01 rna ? GO:0003735 ... P12737 15184028
    45771 1s72:M (2.4) BS01 rna ? GO:0002181 ... P60618 15184028
    45772 1s72:N (2.4) BS01 rna ? GO:0000027 ... P14123 15184028
    45773 1s72:N (2.4) BS02 rna ? GO:0000027 ... P14123 15184028
    45774 1s72:O (2.4) BS01 rna ? GO:0003723 ... P12733 15184028
    45775 1s72:P (2.4) BS01 rna ? GO:0003723 ... P14119 15184028
    45776 1s72:Q (2.4) BS01 rna ? GO:0003735 ... P12734 15184028
    45777 1s72:Q (2.4) BS02 rna ? GO:0003735 ... P12734 15184028
    45778 1s72:R (2.4) BS01 rna ? GO:0002181 ... P10970 15184028
    45779 1s72:S (2.4) BS01 rna ? GO:0000027 ... P12732 15184028
    45780 1s72:T (2.4) BS01 rna ? GO:0002181 ... P10972 15184028
    45781 1s72:T (2.4) BS02 MG ? GO:0002181 ... P10972 15184028
    45782 1s72:U (2.4) BS01 rna ? GO:0003735 ... P14116 15184028
    45783 1s72:V (2.4) BS01 rna ? GO:0003735 ... P10971 15184028
    45784 1s72:W (2.4) BS01 rna ? GO:0000463 ... P14121 15184028
    45785 1s72:W (2.4) BS02 rna ? GO:0000463 ... P14121 15184028
    45786 1s72:X (2.4) BS01 rna ? GO:0002181 ... P18138 15184028
    45787 1s72:Y (2.4) BS01 rna ? GO:0000166 ... P12736 15184028
    45788 1s72:Y (2.4) BS02 MG ? GO:0000166 ... P12736 15184028
    45789 1s72:Z (2.4) BS01 rna ? GO:0003735 ... P60619 15184028
    45790 1s73:A (1.53) BS01 FMI 1.11.1.5 GO:0004601 ... P00431 N/A
    45791 1s76:D (2.88) BS01 dna 2.7.7.6 GO:0000428 ... P00573 15016374
    45792 1s76:D (2.88) BS02 dna 2.7.7.6 GO:0000428 ... P00573 15016374
    45793 1s76:D (2.88) BS03 rna 2.7.7.6 GO:0000428 ... P00573 15016374
    45794 1s76:D (2.88) BS04 APC 2.7.7.6 GO:0000428 ... P00573 15016374
    45795 1s76:D (2.88) BS05 MG 2.7.7.6 GO:0000428 ... P00573 15016374
    45796 1s76:D (2.88) BS06 MG 2.7.7.6 GO:0000428 ... P00573 15016374
    45797 1s77:D (2.69) BS01 dna 2.7.7.6 GO:0000428 ... P00573 15016374
    45798 1s77:D (2.69) BS02 dna 2.7.7.6 GO:0000428 ... P00573 15016374
    45799 1s77:D (2.69) BS03 rna 2.7.7.6 GO:0000428 ... P00573 15016374
    45800 1s77:D (2.69) BS04 MG 2.7.7.6 GO:0000428 ... P00573 15016374

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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