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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    40201 1q6c:A (1.86) BS01 GLC 3.2.1.2 GO:0000272 ... P10538 14638688
    40202 1q6c:A (1.86) BS02 GLC 3.2.1.2 GO:0000272 ... P10538 14638688
    40203 1q6c:A (1.86) BS03 GLC 3.2.1.2 GO:0000272 ... P10538 14638688
    40204 1q6c:A (1.86) BS04 GLC 3.2.1.2 GO:0000272 ... P10538 14638688
    40205 1q6d:A (2.0) BS01 GLC 3.2.1.2 GO:0000272 ... P10538 14638688
    40206 1q6d:A (2.0) BS02 GLC 3.2.1.2 GO:0000272 ... P10538 14638688
    40207 1q6d:A (2.0) BS03 BGC 3.2.1.2 GO:0000272 ... P10538 14638688
    40208 1q6d:A (2.0) BS04 GLC 3.2.1.2 GO:0000272 ... P10538 14638688
    40209 1q6e:A (1.95) BS01 GLC 3.2.1.2 GO:0000272 ... P10538 14638688
    40210 1q6e:A (1.95) BS02 GLC 3.2.1.2 GO:0000272 ... P10538 14638688
    40211 1q6e:A (1.95) BS03 GLC 3.2.1.2 GO:0000272 ... P10538 14638688
    40212 1q6f:A (2.1) BS01 BGC 3.2.1.2 GO:0000272 ... P10538 14638688
    40213 1q6f:A (2.1) BS02 BGC 3.2.1.2 GO:0000272 ... P10538 14638688
    40214 1q6f:A (2.1) BS03 BGC 3.2.1.2 GO:0000272 ... P10538 14638688
    40215 1q6f:A (2.1) BS04 GLC 3.2.1.2 GO:0000272 ... P10538 14638688
    40216 1q6g:A (2.0) BS01 GLC 3.2.1.2 GO:0000272 ... P10538 14638688
    40217 1q6g:A (2.0) BS02 GLC 3.2.1.2 GO:0000272 ... P10538 14638688
    40218 1q6g:A (2.0) BS03 GLC 3.2.1.2 GO:0000272 ... P10538 14638688
    40219 1q6i:A (2.25) BS01 FK5 5.2.1.8 GO:0003755 ... P45523 14672666
    40220 1q6i:B (2.25) BS01 FK5 5.2.1.8 GO:0003755 ... P45523 14672666
    40221 1q6j:A (2.2) BS01 335 3.1.3.48 GO:0004725 ... P18031 14516196 MOAD: ic50=0.016uM
    PDBbind: -logKd/Ki=7.80, IC50=0.016uM
    BindingDB: IC50=16nM
    40222 1q6k:A (2.1) BS01 TCO 3.4.22.38 GO:0006508 ... P43235 14684342 MOAD: ic50=26nM
    PDBbind: -logKd/Ki=7.59, IC50=26nM
    BindingDB: IC50=26nM
    40223 1q6l:A (1.8) BS01 MG 4.1.1.85 GO:0000287 ... P39304 14567674
    40224 1q6l:A (1.8) BS02 TX4 4.1.1.85 GO:0000287 ... P39304 14567674
    40225 1q6l:B (1.8) BS01 MG 4.1.1.85 GO:0000287 ... P39304 14567674
    40226 1q6l:B (1.8) BS02 TX4 4.1.1.85 GO:0000287 ... P39304 14567674
    40227 1q6m:A (2.2) BS01 P27 3.1.3.48 GO:0004725 ... P18031 14516196 MOAD: ic50=0.013uM
    PDBbind: -logKd/Ki=7.89, IC50=0.013uM
    BindingDB: IC50=120nM
    40228 1q6n:A (2.1) BS01 P90 3.1.3.48 GO:0004725 ... P18031 14516196 MOAD: ic50=0.023uM
    PDBbind: -logKd/Ki=7.64, IC50=0.023uM
    40229 1q6n:A (2.1) BS02 P90 3.1.3.48 GO:0004725 ... P18031 14516196 MOAD: ic50=0.023uM
    PDBbind: -logKd/Ki=7.64, IC50=0.023uM
    40230 1q6n:B (2.1) BS01 P90 3.1.3.48 GO:0004725 ... P18031 14516196 MOAD: ic50=0.023uM
    40231 1q6n:B (2.1) BS02 P90 3.1.3.48 GO:0004725 ... P18031 14516196 MOAD: ic50=0.023uM
    40232 1q6o:A (1.202) BS01 MG 4.1.1.85 GO:0000287 ... P39304 14567674
    40233 1q6o:A (1.202) BS02 LG6 4.1.1.85 GO:0000287 ... P39304 14567674
    40234 1q6o:B (1.202) BS01 MG 4.1.1.85 GO:0000287 ... P39304 14567674
    40235 1q6o:B (1.202) BS02 LG6 4.1.1.85 GO:0000287 ... P39304 14567674
    40236 1q6p:A (2.3) BS01 213 3.1.3.48 GO:0004725 ... P18031 14516196 MOAD: ic50=3nM
    PDBbind: -logKd/Ki=8.52, IC50=3nM
    BindingDB: IC50=3nM
    40237 1q6p:A (2.3) BS02 213 3.1.3.48 GO:0004725 ... P18031 14516196 MOAD: ic50=3nM
    PDBbind: -logKd/Ki=8.52, IC50=3nM
    BindingDB: IC50=3nM
    40238 1q6p:B (2.3) BS01 213 3.1.3.48 GO:0004725 ... P18031 14516196 MOAD: ic50=3nM
    BindingDB: IC50=3nM
    40239 1q6p:B (2.3) BS02 213 3.1.3.48 GO:0004725 ... P18031 14516196 MOAD: ic50=3nM
    BindingDB: IC50=3nM
    40240 1q6q:A (1.695) BS01 MG 4.1.1.85 GO:0000287 ... P39304 14567674
    40241 1q6q:A (1.695) BS02 LXP 4.1.1.85 GO:0000287 ... P39304 14567674
    40242 1q6q:B (1.695) BS01 MG 4.1.1.85 GO:0000287 ... P39304 14567674
    40243 1q6q:B (1.695) BS02 LXP 4.1.1.85 GO:0000287 ... P39304 14567674
    40244 1q6r:A (1.76) BS01 MG 4.1.1.85 GO:0000287 ... P39304 14567674
    40245 1q6r:A (1.76) BS02 LX1 4.1.1.85 GO:0000287 ... P39304 14567674
    40246 1q6r:B (1.76) BS01 MG 4.1.1.85 GO:0000287 ... P39304 14567674
    40247 1q6r:B (1.76) BS02 LX1 4.1.1.85 GO:0000287 ... P39304 14567674
    40248 1q6s:A (2.2) BS01 214 3.1.3.48 GO:0004725 ... P18031 14516196 MOAD: ic50=12nM
    PDBbind: -logKd/Ki=7.92, IC50=12nM
    BindingDB: IC50=220nM
    40249 1q6s:A (2.2) BS02 214 3.1.3.48 GO:0004725 ... P18031 14516196 MOAD: ic50=12nM
    PDBbind: -logKd/Ki=7.92, IC50=12nM
    BindingDB: IC50=220nM
    40250 1q6s:B (2.2) BS01 214 3.1.3.48 GO:0004725 ... P18031 14516196 MOAD: ic50=12nM
    BindingDB: IC50=220nM
    40251 1q6s:B (2.2) BS02 214 3.1.3.48 GO:0004725 ... P18031 14516196 MOAD: ic50=12nM
    BindingDB: IC50=220nM
    40252 1q6t:A (2.3) BS01 600 3.1.3.48 GO:0004725 ... P18031 14516196 MOAD: ic50=5nM
    PDBbind: -logKd/Ki=8.30, IC50=5nM
    BindingDB: IC50=5340nM
    40253 1q6t:A (2.3) BS02 600 3.1.3.48 GO:0004725 ... P18031 14516196 MOAD: ic50=5nM
    PDBbind: -logKd/Ki=8.30, IC50=5nM
    BindingDB: IC50=5340nM
    40254 1q6t:B (2.3) BS01 600 3.1.3.48 GO:0004725 ... P18031 14516196 MOAD: ic50=5nM
    BindingDB: IC50=5340nM
    40255 1q6t:B (2.3) BS02 600 3.1.3.48 GO:0004725 ... P18031 14516196 MOAD: ic50=5nM
    BindingDB: IC50=5340nM
    40256 1q6y:A (1.99) BS01 COA 2.8.3.16 GO:0003824 ... P69902 14993676
    40257 1q6z:A (1.0) BS01 MG 4.1.1.7 GO:0000287 ... P20906 N/A
    40258 1q6z:A (1.0) BS02 CA 4.1.1.7 GO:0000287 ... P20906 N/A
    40259 1q6z:A (1.0) BS03 TZD 4.1.1.7 GO:0000287 ... P20906 N/A
    40260 1q74:A (1.7) BS01 ZN 3.5.1.103 GO:0005886 ... P9WJN3 12958317
    40261 1q74:B (1.7) BS01 ZN 3.5.1.103 GO:0005886 ... P9WJN3 12958317
    40262 1q74:C (1.7) BS01 ZN 3.5.1.103 GO:0005886 ... P9WJN3 12958317
    40263 1q74:D (1.7) BS01 ZN 3.5.1.103 GO:0005886 ... P9WJN3 12958317
    40264 1q78:A (2.8) BS01 3AT 2.7.7.19 GO:0003723 ... P25500 15328606
    40265 1q79:A (2.15) BS01 MN 2.7.7.19 GO:0003723 ... P25500 15328606
    40266 1q79:A (2.15) BS02 MN 2.7.7.19 GO:0003723 ... P25500 15328606
    40267 1q79:A (2.15) BS03 3AT 2.7.7.19 GO:0003723 ... P25500 15328606
    40268 1q7a:A (1.6) BS01 SO4 3.1.1.4 GO:0004623 ... P59071 15544328
    40269 1q7a:A (1.6) BS02 OPB 3.1.1.4 GO:0004623 ... P59071 15544328 MOAD: Kd=0.000000064M
    PDBbind: -logKd/Ki=7.19, Kd=64nM
    40270 1q7b:A (2.05) BS01 CA 1.1.1.100 GO:0004316 ... P0AEK2 15016358
    40271 1q7b:A (2.05) BS02 NAP 1.1.1.100 GO:0004316 ... P0AEK2 15016358 MOAD: Kd=3.5uM
    40272 1q7b:B (2.05) BS01 CA 1.1.1.100 GO:0004316 ... P0AEK2 15016358
    40273 1q7b:B (2.05) BS02 CA 1.1.1.100 GO:0004316 ... P0AEK2 15016358
    40274 1q7b:B (2.05) BS03 NAP 1.1.1.100 GO:0004316 ... P0AEK2 15016358 MOAD: Kd=3.5uM
    40275 1q7b:C (2.05) BS01 CA 1.1.1.100 GO:0004316 ... P0AEK2 15016358
    40276 1q7b:C (2.05) BS02 NAP 1.1.1.100 GO:0004316 ... P0AEK2 15016358 MOAD: Kd=3.5uM
    40277 1q7b:D (2.05) BS01 CA 1.1.1.100 GO:0004316 ... P0AEK2 15016358
    40278 1q7b:D (2.05) BS02 NAP 1.1.1.100 GO:0004316 ... P0AEK2 15016358 MOAD: Kd=3.5uM
    40279 1q7c:A (2.5) BS01 NDP 1.1.1.100 GO:0004316 ... P0AEK2 15016358
    40280 1q7c:B (2.5) BS01 NDP 1.1.1.100 GO:0004316 ... P0AEK2 15016358
    40281 1q7e:A (1.6) BS01 MET 2.8.3.16 GO:0003824 ... P69902 14993676
    40282 1q7e:A (1.6) BS02 MET 2.8.3.16 GO:0003824 ... P69902 14993676
    40283 1q7g:A (2.6) BS01 NHO 1.1.1.3 GO:0004412 ... P31116 14583265
    40284 1q7l:A (1.4) BS01 ZN 3.5.1.14 GO:0004046 ... Q03154 12933810
    40285 1q7l:A (1.4) BS02 ZN 3.5.1.14 GO:0004046 ... Q03154 12933810
    40286 1q7l:A (1.4) BS03 GLY 3.5.1.14 GO:0004046 ... Q03154 12933810
    40287 1q7l:C (1.4) BS01 ZN 3.5.1.14 GO:0004046 ... Q03154 12933810
    40288 1q7l:C (1.4) BS02 ZN 3.5.1.14 GO:0004046 ... Q03154 12933810
    40289 1q7l:C (1.4) BS03 GLY 3.5.1.14 GO:0004046 ... Q03154 12933810
    40290 1q7t:A (1.9) BS01 BOG 3.5.1.103 GO:0005886 ... P9WJN3 14698305
    40291 1q7t:A (1.9) BS02 BOG 3.5.1.103 GO:0005886 ... P9WJN3 14698305
    40292 1q7t:B (1.9) BS01 BOG 3.5.1.103 GO:0005886 ... P9WJN3 14698305
    40293 1q7t:B (1.9) BS02 BOG 3.5.1.103 GO:0005886 ... P9WJN3 14698305
    40294 1q7y:1 (3.2) BS01 rna ? GO:0003735 ... P60619 12185246
    40295 1q7y:2 (3.2) BS01 rna ? GO:0003723 ... P32410 12185246
    40296 1q7y:3 (3.2) BS01 rna ? GO:0003735 ... P22452 12185246
    40297 1q7y:4 (3.2) BS01 rna ? GO:0000049 ... P32411 12185246
    40298 1q7y:4 (3.2) BS02 MG ? GO:0000049 ... P32411 12185246
    40299 1q7y:C (3.2) BS01 rna ? GO:0002181 ... P20276 12185246
    40300 1q7y:C (3.2) BS02 MG ? GO:0002181 ... P20276 12185246
    40301 1q7y:D (3.2) BS01 rna ? GO:0003723 ... P20279 12185246
    40302 1q7y:E (3.2) BS01 rna ? GO:0003723 ... P12735 12185246
    40303 1q7y:F (3.2) BS01 rna ? GO:0000049 ... P14124 12185246
    40304 1q7y:F (3.2) BS02 rna ? GO:0000049 ... P14124 12185246
    40305 1q7y:G (3.2) BS01 rna ? GO:0002181 ... P14135 12185246
    40306 1q7y:H (3.2) BS01 rna ? GO:0001682 ... P12743 12185246
    40307 1q7y:J (3.2) BS01 rna ? GO:0000027 ... P60617 12185246
    40308 1q7y:K (3.2) BS01 rna ? GO:0003729 ... P29198 12185246
    40309 1q7y:L (3.2) BS01 rna ? GO:0003735 ... P22450 12185246
    40310 1q7y:M (3.2) BS01 rna ? GO:0003735 ... P12737 12185246
    40311 1q7y:N (3.2) BS01 rna ? GO:0002181 ... P60618 12185246
    40312 1q7y:O (3.2) BS01 rna ? GO:0000027 ... P14123 12185246
    40313 1q7y:O (3.2) BS02 rna ? GO:0000027 ... P14123 12185246
    40314 1q7y:P (3.2) BS01 rna ? GO:0003723 ... P12733 12185246
    40315 1q7y:Q (3.2) BS01 rna ? GO:0003723 ... P14119 12185246
    40316 1q7y:R (3.2) BS01 rna ? GO:0003735 ... P12734 12185246
    40317 1q7y:R (3.2) BS02 rna ? GO:0003735 ... P12734 12185246
    40318 1q7y:S (3.2) BS01 rna ? GO:0002181 ... P10970 12185246
    40319 1q7y:T (3.2) BS01 rna ? GO:0000027 ... P12732 12185246
    40320 1q7y:U (3.2) BS01 rna ? GO:0002181 ... P10972 12185246
    40321 1q7y:U (3.2) BS02 MG ? GO:0002181 ... P10972 12185246
    40322 1q7y:V (3.2) BS01 rna ? GO:0003735 ... P14116 12185246
    40323 1q7y:W (3.2) BS01 rna ? GO:0003735 ... P10971 12185246
    40324 1q7y:X (3.2) BS01 rna ? GO:0000463 ... P14121 12185246
    40325 1q7y:X (3.2) BS02 rna ? GO:0000463 ... P14121 12185246
    40326 1q7y:Y (3.2) BS01 rna ? GO:0002181 ... P18138 12185246
    40327 1q7y:Z (3.2) BS01 rna ? GO:0000166 ... P12736 12185246
    40328 1q7y:Z (3.2) BS02 MG ? GO:0000166 ... P12736 12185246
    40329 1q81:1 (2.95) BS01 rna ? GO:0003735 ... P60619 12185246
    40330 1q81:2 (2.95) BS01 rna ? GO:0003723 ... P32410 12185246
    40331 1q81:3 (2.95) BS01 rna ? GO:0003735 ... P22452 12185246
    40332 1q81:4 (2.95) BS01 rna ? GO:0000049 ... P32411 12185246
    40333 1q81:4 (2.95) BS02 MG ? GO:0000049 ... P32411 12185246
    40334 1q81:C (2.95) BS01 rna ? GO:0002181 ... P20276 12185246
    40335 1q81:C (2.95) BS02 MG ? GO:0002181 ... P20276 12185246
    40336 1q81:D (2.95) BS01 rna ? GO:0003723 ... P20279 12185246
    40337 1q81:E (2.95) BS01 rna ? GO:0003723 ... P12735 12185246
    40338 1q81:F (2.95) BS01 rna ? GO:0000049 ... P14124 12185246
    40339 1q81:F (2.95) BS02 rna ? GO:0000049 ... P14124 12185246
    40340 1q81:G (2.95) BS01 rna ? GO:0002181 ... P14135 12185246
    40341 1q81:H (2.95) BS01 rna ? GO:0001682 ... P12743 12185246
    40342 1q81:J (2.95) BS01 rna ? GO:0000027 ... P60617 12185246
    40343 1q81:K (2.95) BS01 rna ? GO:0003729 ... P29198 12185246
    40344 1q81:L (2.95) BS01 rna ? GO:0003735 ... P22450 12185246
    40345 1q81:M (2.95) BS01 rna ? GO:0003735 ... P12737 12185246
    40346 1q81:N (2.95) BS01 rna ? GO:0002181 ... P60618 12185246
    40347 1q81:O (2.95) BS01 rna ? GO:0000027 ... P14123 12185246
    40348 1q81:O (2.95) BS02 rna ? GO:0000027 ... P14123 12185246
    40349 1q81:P (2.95) BS01 rna ? GO:0003723 ... P12733 12185246
    40350 1q81:Q (2.95) BS01 rna ? GO:0003723 ... P14119 12185246
    40351 1q81:R (2.95) BS01 rna ? GO:0003735 ... P12734 12185246
    40352 1q81:R (2.95) BS02 rna ? GO:0003735 ... P12734 12185246
    40353 1q81:S (2.95) BS01 rna ? GO:0002181 ... P10970 12185246
    40354 1q81:T (2.95) BS01 rna ? GO:0000027 ... P12732 12185246
    40355 1q81:U (2.95) BS01 rna ? GO:0002181 ... P10972 12185246
    40356 1q81:U (2.95) BS02 MG ? GO:0002181 ... P10972 12185246
    40357 1q81:V (2.95) BS01 rna ? GO:0003735 ... P14116 12185246
    40358 1q81:W (2.95) BS01 rna ? GO:0003735 ... P10971 12185246
    40359 1q81:X (2.95) BS01 rna ? GO:0000463 ... P14121 12185246
    40360 1q81:X (2.95) BS02 rna ? GO:0000463 ... P14121 12185246
    40361 1q81:Y (2.95) BS01 rna ? GO:0002181 ... P18138 12185246
    40362 1q81:Z (2.95) BS01 rna ? GO:0000166 ... P12736 12185246
    40363 1q81:Z (2.95) BS02 MG ? GO:0000166 ... P12736 12185246
    40364 1q82:1 (2.98) BS01 rna ? GO:0003735 ... P60619 12185246
    40365 1q82:2 (2.98) BS01 rna ? GO:0003723 ... P32410 12185246
    40366 1q82:3 (2.98) BS01 rna ? GO:0003735 ... P22452 12185246
    40367 1q82:4 (2.98) BS01 rna ? GO:0000049 ... P32411 12185246
    40368 1q82:4 (2.98) BS02 MG ? GO:0000049 ... P32411 12185246
    40369 1q82:C (2.98) BS01 rna ? GO:0002181 ... P20276 12185246
    40370 1q82:C (2.98) BS02 MG ? GO:0002181 ... P20276 12185246
    40371 1q82:D (2.98) BS01 rna ? GO:0003723 ... P20279 12185246
    40372 1q82:E (2.98) BS01 rna ? GO:0003723 ... P12735 12185246
    40373 1q82:F (2.98) BS01 rna ? GO:0000049 ... P14124 12185246
    40374 1q82:F (2.98) BS02 rna ? GO:0000049 ... P14124 12185246
    40375 1q82:G (2.98) BS01 rna ? GO:0002181 ... P14135 12185246
    40376 1q82:H (2.98) BS01 rna ? GO:0001682 ... P12743 12185246
    40377 1q82:J (2.98) BS01 rna ? GO:0000027 ... P60617 12185246
    40378 1q82:K (2.98) BS01 rna ? GO:0003729 ... P29198 12185246
    40379 1q82:L (2.98) BS01 rna ? GO:0003735 ... P22450 12185246
    40380 1q82:M (2.98) BS01 rna ? GO:0003735 ... P12737 12185246
    40381 1q82:N (2.98) BS01 rna ? GO:0002181 ... P60618 12185246
    40382 1q82:O (2.98) BS01 rna ? GO:0000027 ... P14123 12185246
    40383 1q82:O (2.98) BS02 rna ? GO:0000027 ... P14123 12185246
    40384 1q82:P (2.98) BS01 rna ? GO:0003723 ... P12733 12185246
    40385 1q82:Q (2.98) BS01 rna ? GO:0003723 ... P14119 12185246
    40386 1q82:R (2.98) BS01 rna ? GO:0003735 ... P12734 12185246
    40387 1q82:R (2.98) BS02 rna ? GO:0003735 ... P12734 12185246
    40388 1q82:S (2.98) BS01 rna ? GO:0002181 ... P10970 12185246
    40389 1q82:T (2.98) BS01 rna ? GO:0000027 ... P12732 12185246
    40390 1q82:U (2.98) BS01 rna ? GO:0002181 ... P10972 12185246
    40391 1q82:U (2.98) BS02 MG ? GO:0002181 ... P10972 12185246
    40392 1q82:V (2.98) BS01 rna ? GO:0003735 ... P14116 12185246
    40393 1q82:W (2.98) BS01 rna ? GO:0003735 ... P10971 12185246
    40394 1q82:X (2.98) BS01 rna ? GO:0000463 ... P14121 12185246
    40395 1q82:X (2.98) BS02 rna ? GO:0000463 ... P14121 12185246
    40396 1q82:Y (2.98) BS01 rna ? GO:0002181 ... P18138 12185246
    40397 1q82:Z (2.98) BS01 rna ? GO:0000166 ... P12736 12185246
    40398 1q82:Z (2.98) BS02 MG ? GO:0000166 ... P12736 12185246
    40399 1q83:A (2.65) BS01 TZ5 3.1.1.7 GO:0004104 ... P21836 14757816 PDBbind: -logKd/Ki=12.39, Ki=410fM
    BindingDB: Ki=0.410nM, Kd=0.00041nM
    40400 1q83:B (2.65) BS01 TZ5 3.1.1.7 GO:0004104 ... P21836 14757816 BindingDB: Ki=0.410nM, Kd=0.00041nM

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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