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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    35201 1o86:A (2.0) BS02 ZN 3.4.15.1 GO:0006508 ... P12821 12540854
    35202 1o86:A (2.0) BS03 LPR 3.4.15.1 GO:0006508 ... P12821 12540854 PDBbind: -logKd/Ki=9.57, Ki=0.27nM
    BindingDB: IC50=1.2nM
    35203 1o87:A (2.1) BS01 GDP 3.6.5.4 GO:0003924 ... O07347 14696184
    35204 1o87:B (2.1) BS01 GDP 3.6.5.4 GO:0003924 ... O07347 14696184
    35205 1o88:A (2.2) BS01 CA 4.2.2.2 GO:0005576 ... P11073 12540845
    35206 1o8a:A (2.0) BS01 ZN 3.4.15.1 GO:0006508 ... P12821 12540854
    35207 1o8a:A (2.0) BS02 NXA 3.4.15.1 GO:0006508 ... P12821 12540854
    35208 1o8b:A (1.25) BS01 ABF 5.3.1.6 GO:0004751 ... P0A7Z0 12517338 MOAD: Ki=2.1mM
    35209 1o8b:B (1.25) BS01 ABF 5.3.1.6 GO:0004751 ... P0A7Z0 12517338 MOAD: Ki=2.1mM
    35210 1o8c:A (2.6) BS01 NDP 1.3.1.84 GO:0005737 ... P26646 15388933
    35211 1o8c:B (2.6) BS01 NDP 1.3.1.84 GO:0005737 ... P26646 15388933
    35212 1o8c:C (2.6) BS01 NDP 1.3.1.84 GO:0005737 ... P26646 15388933
    35213 1o8c:D (2.6) BS01 NDP 1.3.1.84 GO:0005737 ... P26646 15388933
    35214 1o8d:A (2.2) BS01 CA 4.2.2.2 GO:0005576 ... P11073 12540845
    35215 1o8e:A (2.2) BS01 CA 4.2.2.2 GO:0005576 ... P11073 12540845
    35216 1o8f:A (2.2) BS01 CA 4.2.2.2 GO:0005576 ... P11073 12540845
    35217 1o8g:A (2.2) BS01 CA 4.2.2.2 GO:0005576 ... P11073 12540845
    35218 1o8h:A (2.2) BS01 CA 4.2.2.2 GO:0005576 ... P11073 12540845
    35219 1o8j:A (2.2) BS01 CA 4.2.2.2 GO:0005576 ... P11073 12540845
    35220 1o8k:A (2.2) BS01 CA 4.2.2.2 GO:0005576 ... P11073 12540845
    35221 1o8l:A (2.2) BS01 CA 4.2.2.2 GO:0005576 ... P11073 12540845
    35222 1o8p:A (2.0) BS01 CA 3.2.1.8 GO:0030246 ... Q8GJ44 12634060
    35223 1o8s:A (1.15) BS01 BGC 3.2.1.8 GO:0030246 ... Q8GJ44 12634060
    35224 1o8s:A (1.15) BS02 BGC 3.2.1.8 GO:0030246 ... Q8GJ44 12634060
    35225 1o8s:A (1.15) BS03 CA 3.2.1.8 GO:0030246 ... Q8GJ44 12634060
    35226 1o8v:A (1.6) BS01 PLM ? GO:0005504 ... Q02970 12818189
    35227 1o90:A (3.1) BS01 PO4 2.5.1.6 GO:0000287 ... P13444 12888348
    35228 1o90:A (3.1) BS02 PO4 2.5.1.6 GO:0000287 ... P13444 12888348
    35229 1o90:A (3.1) BS03 MG 2.5.1.6 GO:0000287 ... P13444 12888348
    35230 1o90:B (3.1) BS01 PO4 2.5.1.6 GO:0000287 ... P13444 12888348
    35231 1o92:A (3.19) BS01 PO4 2.5.1.6 GO:0000287 ... P13444 12888348
    35232 1o92:A (3.19) BS02 PO4 2.5.1.6 GO:0000287 ... P13444 12888348
    35233 1o92:A (3.19) BS03 MG 2.5.1.6 GO:0000287 ... P13444 12888348
    35234 1o92:A (3.19) BS04 MG 2.5.1.6 GO:0000287 ... P13444 12888348
    35235 1o92:A (3.19) BS05 ADP 2.5.1.6 GO:0000287 ... P13444 12888348
    35236 1o92:B (3.19) BS01 ADP 2.5.1.6 GO:0000287 ... P13444 12888348
    35237 1o92:B (3.19) BS02 PO4 2.5.1.6 GO:0000287 ... P13444 12888348
    35238 1o93:A (3.49) BS01 PO4 2.5.1.6 GO:0000287 ... P13444 12888348
    35239 1o93:A (3.49) BS02 MG 2.5.1.6 GO:0000287 ... P13444 12888348
    35240 1o93:A (3.49) BS03 ATP 2.5.1.6 GO:0000287 ... P13444 12888348
    35241 1o93:B (3.49) BS01 ATP 2.5.1.6 GO:0000287 ... P13444 12888348
    35242 1o93:B (3.49) BS02 PO4 2.5.1.6 GO:0000287 ... P13444 12888348
    35243 1o94:A (2.0) BS01 FMN 1.5.8.2 GO:0009056 ... P16099 12567183
    35244 1o94:A (2.0) BS02 ADP 1.5.8.2 GO:0009056 ... P16099 12567183
    35245 1o94:A (2.0) BS03 SF4 1.5.8.2 GO:0009056 ... P16099 12567183
    35246 1o94:B (2.0) BS01 FMN 1.5.8.2 GO:0009056 ... P16099 12567183
    35247 1o94:B (2.0) BS02 ADP 1.5.8.2 GO:0009056 ... P16099 12567183
    35248 1o94:B (2.0) BS03 SF4 1.5.8.2 GO:0009056 ... P16099 12567183
    35249 1o94:C (2.0) BS01 AMP ? GO:0000166 ... P53570 12567183
    35250 1o94:E (2.0) BS01 AMP ? GO:0000166 ... P53570 12567183
    35251 1o95:A (3.7) BS01 FMN 1.5.8.2 GO:0009056 ... P16099 12567183
    35252 1o95:A (3.7) BS02 ADP 1.5.8.2 GO:0009056 ... P16099 12567183
    35253 1o95:A (3.7) BS03 SF4 1.5.8.2 GO:0009056 ... P16099 12567183
    35254 1o95:B (3.7) BS01 FMN 1.5.8.2 GO:0009056 ... P16099 12567183
    35255 1o95:B (3.7) BS02 ADP 1.5.8.2 GO:0009056 ... P16099 12567183
    35256 1o95:B (3.7) BS03 SF4 1.5.8.2 GO:0009056 ... P16099 12567183
    35257 1o95:C (3.7) BS01 AMP ? GO:0000166 ... P53570 12567183
    35258 1o95:E (3.7) BS01 AMP ? GO:0000166 ... P53570 12567183
    35259 1o96:A (3.1) BS01 AMP ? GO:0000166 ... P53570 12567183
    35260 1o96:A (3.1) BS02 FAD ? GO:0000166 ... P53570 12567183
    35261 1o96:B (3.1) BS01 FAD ? GO:0009055 ... P53571 12567183
    35262 1o96:C (3.1) BS01 AMP ? GO:0000166 ... P53570 12567183
    35263 1o96:C (3.1) BS02 FAD ? GO:0000166 ... P53570 12567183
    35264 1o96:D (3.1) BS01 FAD ? GO:0009055 ... P53571 12567183
    35265 1o96:E (3.1) BS01 AMP ? GO:0000166 ... P53570 12567183
    35266 1o96:E (3.1) BS02 FAD ? GO:0000166 ... P53570 12567183
    35267 1o96:F (3.1) BS01 FAD ? GO:0009055 ... P53571 12567183
    35268 1o96:Q (3.1) BS01 AMP ? GO:0000166 ... P53570 12567183
    35269 1o96:Z (3.1) BS01 FAD ? GO:0009055 ... P53571 12567183
    35270 1o97:C (1.6) BS01 AMP ? GO:0000166 ... P53570 12567183
    35271 1o97:C (1.6) BS02 FAD ? GO:0000166 ... P53570 12567183
    35272 1o97:D (1.6) BS01 FAD ? GO:0009055 ... P53571 12567183
    35273 1o98:A (1.4) BS01 MN 5.4.2.12 GO:0003824 ... Q9X519 12729763
    35274 1o98:A (1.4) BS02 MN 5.4.2.12 GO:0003824 ... Q9X519 12729763
    35275 1o98:A (1.4) BS03 2PG 5.4.2.12 GO:0003824 ... Q9X519 12729763
    35276 1o99:A (2.65) BS01 MN 5.4.2.12 GO:0003824 ... Q9X519 12729763
    35277 1o99:A (2.65) BS02 2PG 5.4.2.12 GO:0003824 ... Q9X519 12729763
    35278 1o9a:A (-1.00) BS01 peptide ? GO:0005576 ... P02751 12736686
    35279 1o9b:A (2.5) BS01 NAI 1.1.1.282 GO:0004764 ... P0A6D5 12637497
    35280 1o9b:B (2.5) BS01 NAI 1.1.1.282 GO:0004764 ... P0A6D5 12637497
    35281 1o9d:A (2.3) BS01 peptide ? GO:0005737 ... P93343 12606564
    35282 1o9e:A (2.6) BS01 FSC ? GO:0005737 ... P93343 12606564 PDBbind: -logKd/Ki=4.18, Kd=66uM
    35283 1o9f:A (2.7) BS01 peptide ? GO:0005737 ... P93343 12606564 Manual survey: Kd=0.7uM (12606564)
    35284 1o9f:A (2.7) BS02 FSC ? GO:0005737 ... P93343 12606564 Manual survey: Kd=0.7uM (12606564)
    35285 1o9i:A (1.33) BS01 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    35286 1o9i:A (1.33) BS02 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    35287 1o9i:A (1.33) BS03 CA 1.11.1.6 GO:0004096 ... P60355 12631270
    35288 1o9i:A (1.33) BS04 O 1.11.1.6 GO:0004096 ... P60355 12631270
    35289 1o9i:A (1.33) BS05 CA 1.11.1.6 GO:0004096 ... P60355 12631270
    35290 1o9i:B (1.33) BS01 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    35291 1o9i:B (1.33) BS02 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    35292 1o9i:B (1.33) BS03 CA 1.11.1.6 GO:0004096 ... P60355 12631270
    35293 1o9i:B (1.33) BS04 O 1.11.1.6 GO:0004096 ... P60355 12631270
    35294 1o9i:B (1.33) BS05 CA 1.11.1.6 GO:0004096 ... P60355 12631270
    35295 1o9i:C (1.33) BS01 CA 1.11.1.6 GO:0004096 ... P60355 12631270
    35296 1o9i:C (1.33) BS02 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    35297 1o9i:C (1.33) BS03 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    35298 1o9i:C (1.33) BS04 CA 1.11.1.6 GO:0004096 ... P60355 12631270
    35299 1o9i:C (1.33) BS05 O 1.11.1.6 GO:0004096 ... P60355 12631270
    35300 1o9i:D (1.33) BS01 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    35301 1o9i:D (1.33) BS02 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    35302 1o9i:D (1.33) BS03 CA 1.11.1.6 GO:0004096 ... P60355 12631270
    35303 1o9i:D (1.33) BS04 O 1.11.1.6 GO:0004096 ... P60355 12631270
    35304 1o9i:D (1.33) BS05 CA 1.11.1.6 GO:0004096 ... P60355 12631270
    35305 1o9i:E (1.33) BS01 CA 1.11.1.6 GO:0004096 ... P60355 12631270
    35306 1o9i:E (1.33) BS02 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    35307 1o9i:E (1.33) BS03 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    35308 1o9i:E (1.33) BS04 CA 1.11.1.6 GO:0004096 ... P60355 12631270
    35309 1o9i:E (1.33) BS05 O 1.11.1.6 GO:0004096 ... P60355 12631270
    35310 1o9i:F (1.33) BS01 CA 1.11.1.6 GO:0004096 ... P60355 12631270
    35311 1o9i:F (1.33) BS02 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    35312 1o9i:F (1.33) BS03 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    35313 1o9i:F (1.33) BS04 CA 1.11.1.6 GO:0004096 ... P60355 12631270
    35314 1o9i:F (1.33) BS05 O 1.11.1.6 GO:0004096 ... P60355 12631270
    35315 1o9j:A (2.4) BS01 NAD 1.2.1.3 GO:0001758 ... Q28399 12693930
    35316 1o9j:B (2.4) BS01 NAD 1.2.1.3 GO:0001758 ... Q28399 12693930
    35317 1o9j:C (2.4) BS01 NAD 1.2.1.3 GO:0001758 ... Q28399 12693930
    35318 1o9j:D (2.4) BS01 NAD 1.2.1.3 GO:0001758 ... Q28399 12693930
    35319 1o9k:A (2.6) BS01 peptide ? GO:0005634 ... P06400 12598654
    35320 1o9k:B (2.6) BS01 peptide ? GO:0005634 ... P06400 12598654
    35321 1o9k:C (2.6) BS01 peptide ? GO:0005634 ... P06400 12598654
    35322 1o9k:D (2.6) BS01 peptide ? GO:0005634 ... P06400 12598654
    35323 1o9k:E (2.6) BS01 peptide ? GO:0005634 ... P06400 12598654
    35324 1o9k:F (2.6) BS01 peptide ? GO:0005634 ... P06400 12598654
    35325 1o9k:G (2.6) BS01 peptide ? GO:0005634 ... P06400 12598654
    35326 1o9k:H (2.6) BS01 peptide ? GO:0005634 ... P06400 12598654
    35327 1o9l:A (2.4) BS01 EMT 2.8.3.5 GO:0005739 ... Q29551 N/A
    35328 1o9o:A (2.3) BS01 MLM ? GO:0003824 ... Q9ZIV5 12711609
    35329 1o9o:B (2.3) BS01 MLM ? GO:0003824 ... Q9ZIV5 12711609
    35330 1o9s:A (1.75) BS01 peptide 2.1.1.364 GO:0005694 ... Q8WTS6 12540855
    35331 1o9s:A (1.75) BS02 SAH 2.1.1.364 GO:0005694 ... Q8WTS6 12540855
    35332 1o9s:B (1.75) BS01 peptide 2.1.1.364 GO:0005694 ... Q8WTS6 12540855
    35333 1o9s:B (1.75) BS02 peptide 2.1.1.364 GO:0005694 ... Q8WTS6 12540855
    35334 1o9s:B (1.75) BS03 SAH 2.1.1.364 GO:0005694 ... Q8WTS6 12540855
    35335 1o9t:A (2.9) BS01 MET 2.5.1.6 GO:0000287 ... P13444 12888348
    35336 1o9t:A (2.9) BS02 MG 2.5.1.6 GO:0000287 ... P13444 12888348
    35337 1o9t:A (2.9) BS03 ATP 2.5.1.6 GO:0000287 ... P13444 12888348
    35338 1o9t:B (2.9) BS01 ATP 2.5.1.6 GO:0000287 ... P13444 12888348
    35339 1o9t:B (2.9) BS02 PO4 2.5.1.6 GO:0000287 ... P13444 12888348
    35340 1o9u:A (2.4) BS01 peptide 2.7.11.1
    2.7.11.26
    GO:0004672 ... P49841 12554650
    35341 1o9u:A (2.4) BS02 ADZ 2.7.11.1
    2.7.11.26
    GO:0004672 ... P49841 12554650
    35342 1o9v:A (1.75) BS01 SNG ? GO:0009289 ... Q99003 12864853
    35343 1o9w:A (1.65) BS01 NAG ? GO:0009289 ... Q99003 12864853 MOAD: Kd=1.18mM
    35344 1o9x:A (3.2) BS01 HEM ? GO:0003677 ... P02768 12846933
    35345 1oa0:A (1.25) BS01 SF4 1.7.99.1 GO:0003824 ... Q01770 12764602
    35346 1oa0:A (1.25) BS02 SF3 1.7.99.1 GO:0003824 ... Q01770 12764602
    35347 1oa0:B (1.25) BS01 SF4 1.7.99.1 GO:0003824 ... Q01770 12764602
    35348 1oa0:B (1.25) BS02 SF3 1.7.99.1 GO:0003824 ... Q01770 12764602
    35349 1oa1:A (1.55) BS01 SF4 1.7.99.1 GO:0003824 ... P31101 12764602
    35350 1oa1:A (1.55) BS02 SF3 1.7.99.1 GO:0003824 ... P31101 12764602
    35351 1oa7:A (2.0) BS01 BGC 3.2.1.4 GO:0005975 ... Q8J0K8 12767825
    35352 1oa7:A (2.0) BS02 BGC 3.2.1.4 GO:0005975 ... Q8J0K8 12767825
    35353 1oaa:A (1.25) BS01 OAA 1.1.1.153 GO:0004757 ... Q64105 9405351
    35354 1oaa:A (1.25) BS02 NAP 1.1.1.153 GO:0004757 ... Q64105 9405351
    35355 1oab:A (1.9) BS01 MN 2.5.1.54 GO:0003849 ... P32449 15019786
    35356 1oab:A (1.9) BS02 PEP 2.5.1.54 GO:0003849 ... P32449 15019786
    35357 1oab:B (1.9) BS01 MN 2.5.1.54 GO:0003849 ... P32449 15019786
    35358 1oab:B (1.9) BS02 PEP 2.5.1.54 GO:0003849 ... P32449 15019786
    35359 1oac:A (2.0) BS01 CU 1.4.3.21 GO:0005507 ... P46883 8591028
    35360 1oac:A (2.0) BS02 CA 1.4.3.21 GO:0005507 ... P46883 8591028
    35361 1oac:A (2.0) BS03 CA 1.4.3.21 GO:0005507 ... P46883 8591028
    35362 1oac:B (2.0) BS01 CU 1.4.3.21 GO:0005507 ... P46883 8591028
    35363 1oac:B (2.0) BS02 CA 1.4.3.21 GO:0005507 ... P46883 8591028
    35364 1oac:B (2.0) BS03 CA 1.4.3.21 GO:0005507 ... P46883 8591028
    35365 1oad:A (1.5) BS01 MN 5.3.1.5 GO:0000287 ... P24300 12777803
    35366 1oad:A (1.5) BS02 MG 5.3.1.5 GO:0000287 ... P24300 12777803
    35367 1oad:A (1.5) BS03 MQD 5.3.1.5 GO:0000287 ... P24300 12777803
    35368 1oad:B (1.5) BS01 MN 5.3.1.5 GO:0000287 ... P24300 12777803
    35369 1oad:B (1.5) BS02 MG 5.3.1.5 GO:0000287 ... P24300 12777803
    35370 1oad:B (1.5) BS03 MQD 5.3.1.5 GO:0000287 ... P24300 12777803
    35371 1oae:A (1.95) BS01 HEC ? GO:0003674 ... Q9RQB9 16341897
    35372 1oae:B (1.95) BS01 HEC ? GO:0003674 ... Q9RQB9 16341897
    35373 1oaf:A (1.4) BS01 HEM 1.11.1.11 GO:0004601 ... Q43758 12640445
    35374 1oaf:A (1.4) BS02 ASC 1.11.1.11 GO:0004601 ... Q43758 12640445
    35375 1oag:A (1.75) BS01 HEM 1.11.1.11 GO:0004601 ... Q43758 12640445
    35376 1oah:A (2.3) BS01 HEC 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    35377 1oah:A (2.3) BS02 HEC 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    35378 1oah:A (2.3) BS03 HEC 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    35379 1oah:A (2.3) BS04 HEC 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    35380 1oah:A (2.3) BS05 HEC 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    35381 1oah:A (2.3) BS06 CA 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    35382 1oah:A (2.3) BS07 CA 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    35383 1oah:A (2.3) BS08 ZN 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    35384 1oah:A (2.3) BS09 HEC 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    35385 1oah:B (2.3) BS01 HEC 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    35386 1oah:B (2.3) BS02 HEC 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    35387 1oah:B (2.3) BS03 HEC 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    35388 1oah:B (2.3) BS04 HEC 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    35389 1oah:B (2.3) BS05 HEC 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    35390 1oah:B (2.3) BS06 HEC 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    35391 1oah:B (2.3) BS07 CA 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    35392 1oah:B (2.3) BS08 CA 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    35393 1oai:A (1.0) BS01 peptide ? GO:0005634 ... Q9UBU9 12581645
    35394 1oaj:A (1.73) BS01 ZN 1.15.1.1 GO:0004784 ... P00446 12595249
    35395 1oaj:A (1.73) BS02 CU 1.15.1.1 GO:0004784 ... P00446 12595249
    35396 1oal:A (1.5) BS01 ZN 1.15.1.1 GO:0004784 ... P00446 12595249
    35397 1oal:A (1.5) BS02 CU 1.15.1.1 GO:0004784 ... P00446 12595249
    35398 1oan:A (2.75) BS01 FUC 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0046983 ... P12823 12759475
    35399 1oan:B (2.75) BS01 FUC 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0046983 ... P12823 12759475
    35400 1oao:A (1.9) BS01 SF4 1.2.7.4 GO:0003824 ... P27989 12627225

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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