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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    30201 1mfu:A (2.0) BS10 HMC 3.2.1.1 GO:0003824 ... P0DUB6 12527308
    30202 1mfu:A (2.0) BS11 GLC 3.2.1.1 GO:0003824 ... P0DUB6 12527308
    30203 1mfu:A (2.0) BS12 CA 3.2.1.1 GO:0003824 ... P0DUB6 12527308
    30204 1mfv:A (2.0) BS01 GLC 3.2.1.1 GO:0003824 ... P0DUB6 12527308
    30205 1mfv:A (2.0) BS02 AGL 3.2.1.1 GO:0003824 ... P0DUB6 12527308
    30206 1mfv:A (2.0) BS03 GLC 3.2.1.1 GO:0003824 ... P0DUB6 12527308
    30207 1mfv:A (2.0) BS04 AGL 3.2.1.1 GO:0003824 ... P0DUB6 12527308
    30208 1mfv:A (2.0) BS05 GLC 3.2.1.1 GO:0003824 ... P0DUB6 12527308
    30209 1mfv:A (2.0) BS06 AGL 3.2.1.1 GO:0003824 ... P0DUB6 12527308
    30210 1mfv:A (2.0) BS07 HMC 3.2.1.1 GO:0003824 ... P0DUB6 12527308
    30211 1mfv:A (2.0) BS08 CA 3.2.1.1 GO:0003824 ... P0DUB6 12527308
    30212 1mfz:A (2.8) BS01 GDX 1.1.1.132 GO:0006970 ... P11759 12705829
    30213 1mfz:A (2.8) BS02 GDX 1.1.1.132 GO:0006970 ... P11759 12705829
    30214 1mfz:B (2.8) BS01 GDX 1.1.1.132 GO:0006970 ... P11759 12705829
    30215 1mfz:B (2.8) BS02 GDX 1.1.1.132 GO:0006970 ... P11759 12705829
    30216 1mfz:C (2.8) BS01 GDX 1.1.1.132 GO:0006970 ... P11759 12705829
    30217 1mfz:C (2.8) BS02 GDX 1.1.1.132 GO:0006970 ... P11759 12705829
    30218 1mfz:D (2.8) BS01 GDX 1.1.1.132 GO:0006970 ... P11759 12705829
    30219 1mfz:D (2.8) BS02 GDX 1.1.1.132 GO:0006970 ... P11759 12705829
    30220 1mg0:A (1.8) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 12501206
    30221 1mg0:A (1.8) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 12501206
    30222 1mg0:A (1.8) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 12501206
    30223 1mg0:A (1.8) BS04 DFB 1.1.1.1 GO:0004022 ... P00327 12501206
    30224 1mg0:B (1.8) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 12501206
    30225 1mg0:B (1.8) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 12501206
    30226 1mg0:B (1.8) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 12501206
    30227 1mg0:B (1.8) BS04 DFB 1.1.1.1 GO:0004022 ... P00327 12501206
    30228 1mg0:C (1.8) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 12501206
    30229 1mg0:C (1.8) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 12501206
    30230 1mg0:C (1.8) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 12501206
    30231 1mg0:C (1.8) BS04 DFB 1.1.1.1 GO:0004022 ... P00327 12501206
    30232 1mg0:D (1.8) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 12501206
    30233 1mg0:D (1.8) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 12501206
    30234 1mg0:D (1.8) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 12501206
    30235 1mg0:D (1.8) BS04 DFB 1.1.1.1 GO:0004022 ... P00327 12501206
    30236 1mg1:A (2.5) BS01 GLC ? GO:0005515 ... P0AEX9 10200260
    30237 1mg1:A (2.5) BS02 GLC ? GO:0005515 ... P0AEX9 10200260
    30238 1mg2:C (2.25) BS01 CU ? GO:0005507 ... P22364 12437349
    30239 1mg2:D (2.25) BS01 HEC ? GO:0005506 ... P29899 12437349
    30240 1mg2:G (2.25) BS01 CU ? GO:0005507 ... P22364 12437349
    30241 1mg2:H (2.25) BS01 HEC ? GO:0005506 ... P29899 12437349
    30242 1mg2:K (2.25) BS01 CU ? GO:0005507 ... P22364 12437349
    30243 1mg2:L (2.25) BS01 HEC ? GO:0005506 ... P29899 12437349
    30244 1mg2:O (2.25) BS01 CU ? GO:0005507 ... P22364 12437349
    30245 1mg2:P (2.25) BS01 HEC ? GO:0005506 ... P29899 12437349
    30246 1mg3:C (2.4) BS01 CU ? GO:0005507 ... P22364 12437349
    30247 1mg3:D (2.4) BS01 HEC ? GO:0005506 ... P29899 12437349
    30248 1mg3:G (2.4) BS01 CU ? GO:0005507 ... P22364 12437349
    30249 1mg3:H (2.4) BS01 HEC ? GO:0005506 ... P29899 12437349
    30250 1mg3:K (2.4) BS01 CU ? GO:0005507 ... P22364 12437349
    30251 1mg3:L (2.4) BS01 HEC ? GO:0005506 ... P29899 12437349
    30252 1mg3:O (2.4) BS01 CU ? GO:0005507 ... P22364 12437349
    30253 1mg3:P (2.4) BS01 HEC ? GO:0005506 ... P29899 12437349
    30254 1mg5:A (1.63) BS01 ACT 1.1.1.1 GO:0004022 ... P00334 15581900
    30255 1mg5:A (1.63) BS02 NAI 1.1.1.1 GO:0004022 ... P00334 15581900
    30256 1mg5:B (1.63) BS01 ACT 1.1.1.1 GO:0004022 ... P00334 15581900
    30257 1mg5:B (1.63) BS02 NAI 1.1.1.1 GO:0004022 ... P00334 15581900
    30258 1mgn:A (1.9) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 8307983
    30259 1mgo:A (1.2) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 12501206
    30260 1mgo:A (1.2) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 12501206
    30261 1mgo:A (1.2) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 12501206
    30262 1mgo:B (1.2) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 12501206
    30263 1mgo:B (1.2) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 12501206
    30264 1mgo:B (1.2) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 12501206
    30265 1mgo:B (1.2) BS04 PFB 1.1.1.1 GO:0004022 ... P00327 12501206 MOAD: Ki=51uM
    30266 1mgo:B (1.2) BS05 PFB 1.1.1.1 GO:0004022 ... P00327 12501206 MOAD: Ki=51uM
    30267 1mgv:A (2.1) BS01 PLP 2.6.1.62 GO:0003824 ... P12995 12379100
    30268 1mgv:B (2.1) BS01 PLP 2.6.1.62 GO:0003824 ... P12995 12379100
    30269 1mgy:A (2.0) BS01 BR ? GO:0005216 ... P02945 12829500
    30270 1mgy:A (2.0) BS02 BR ? GO:0005216 ... P02945 12829500
    30271 1mgy:A (2.0) BS03 RET ? GO:0005216 ... P02945 12829500
    30272 1mh1:A (1.38) BS01 MG 3.6.5.2 GO:0001764 ... P63000 9033596
    30273 1mh1:A (1.38) BS02 GNP 3.6.5.2 GO:0001764 ... P63000 9033596
    30274 1mh2:A (2.7) BS01 ZN 3.1.1.4 GO:0004623 ... P60043 N/A
    30275 1mh5:A (2.1) BS01 HAL ? GO:0005576 ... P01837 12948492 PDBbind: -logKd/Ki=9.21, Kd=0.61nM
    30276 1mh5:L (2.1) BS01 HAL ? GO:0005576 ... P01837 12948492
    30277 1mh9:A (1.8) BS01 PO4 3.1.3.- GO:0008253 ... Q9NPB1 12352955
    30278 1mh9:A (1.8) BS02 MG 3.1.3.- GO:0008253 ... Q9NPB1 12352955
    30279 1mhd:A (2.8) BS01 dna ? GO:0005667 ... P84022 9741623 PDBbind: Kd=114nM
    30280 1mhd:A (2.8) BS02 dna ? GO:0005667 ... P84022 9741623 PDBbind: Kd=114nM
    30281 1mhd:B (2.8) BS01 dna ? GO:0005667 ... P84022 9741623 PDBbind: Kd=114nM
    30282 1mhd:B (2.8) BS02 dna ? GO:0005667 ... P84022 9741623 PDBbind: Kd=114nM
    30283 1mhi:B (-1.00) BS01 peptide ? GO:0005179 ... P01308 1433291
    30284 1mhl:A (2.25) BS01 HEM 1.11.2.2 GO:0004601 ... P05164 7840679
    30285 1mhl:B (2.25) BS01 HEM 1.11.2.2 GO:0004601 ... P05164 7840679
    30286 1mhl:C (2.25) BS01 FUC 1.11.2.2 GO:0004601 ... P05164 7840679
    30287 1mhl:C (2.25) BS02 MAN 1.11.2.2 GO:0004601 ... P05164 7840679
    30288 1mhl:C (2.25) BS03 CA 1.11.2.2 GO:0004601 ... P05164 7840679
    30289 1mhl:C (2.25) BS04 HEM 1.11.2.2 GO:0004601 ... P05164 7840679
    30290 1mhl:D (2.25) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 7840679
    30291 1mhl:D (2.25) BS02 FUC 1.11.2.2 GO:0004601 ... P05164 7840679
    30292 1mhl:D (2.25) BS03 CA 1.11.2.2 GO:0004601 ... P05164 7840679
    30293 1mhl:D (2.25) BS04 HEM 1.11.2.2 GO:0004601 ... P05164 7840679
    30294 1mho:A (2.0) BS01 CA ? GO:0005509 ... P02638 9519413
    30295 1mho:A (2.0) BS02 CA ? GO:0005509 ... P02638 9519413
    30296 1mht:A (2.6) BS01 dna 2.1.1.37 GO:0003677 ... P05102 8293469
    30297 1mht:A (2.6) BS02 dna 2.1.1.37 GO:0003677 ... P05102 8293469
    30298 1mht:A (2.6) BS03 SAH 2.1.1.37 GO:0003677 ... P05102 8293469
    30299 1mhw:A (1.9) BS01 peptide 3.4.22.15 GO:0006508 ... P07711 12431059
    30300 1mhw:A (1.9) BS02 peptide 3.4.22.15 GO:0006508 ... P07711 12431059
    30301 1mhw:A (1.9) BS03 peptide 3.4.22.15 GO:0006508 ... P07711 12431059
    30302 1mhw:B (1.9) BS01 peptide 3.4.22.15 GO:0006508 ... P07711 12431059
    30303 1mhw:B (1.9) BS02 peptide 3.4.22.15 GO:0006508 ... P07711 12431059
    30304 1mhw:B (1.9) BS03 peptide 3.4.22.15 GO:0006508 ... P07711 12431059
    30305 1mhw:C (1.9) BS01 peptide 3.4.22.15 GO:0006508 ... P07711 12431059
    30306 1mhw:D (1.9) BS01 peptide 3.4.22.15 GO:0006508 ... P07711 12431059
    30307 1mhy:D (2.0) BS01 FE 1.14.13.25 GO:0016491 ... P27353 9070438
    30308 1mhy:D (2.0) BS02 FE 1.14.13.25 GO:0016491 ... P27353 9070438
    30309 1mhz:D (2.7) BS01 FE 1.14.13.25 GO:0016491 ... P27353 9070438
    30310 1mhz:D (2.7) BS02 FE 1.14.13.25 GO:0016491 ... P27353 9070438
    30311 1mi3:A (1.8) BS01 NAD 1.1.1.307 GO:0004032 ... O74237 12733986
    30312 1mi3:B (1.8) BS01 NAD 1.1.1.307 GO:0004032 ... O74237 12733986
    30313 1mi3:C (1.8) BS01 NAD 1.1.1.307 GO:0004032 ... O74237 12733986
    30314 1mi3:D (1.8) BS01 NAD 1.1.1.307 GO:0004032 ... O74237 12733986
    30315 1mi4:A (1.7) BS01 S3P 2.5.1.19 GO:0003824 ... P0A6D3 12430021 BindingDB: Kd=7000nM
    30316 1mid:A (1.71) BS01 LAP ? GO:0006869 ... P07597 N/A
    30317 1mid:A (1.71) BS02 LAP ? GO:0006869 ... P07597 N/A
    30318 1mid:A (1.71) BS03 LAP ? GO:0006869 ... P07597 N/A
    30319 1mih:A (2.7) BS01 MN ? GO:0000156 ... P0AE67 12591865
    30320 1mih:A (2.7) BS02 BEF ? GO:0000156 ... P0AE67 12591865
    30321 1mih:B (2.7) BS01 MN ? GO:0000156 ... P0AE67 12591865
    30322 1mih:B (2.7) BS02 BEF ? GO:0000156 ... P0AE67 12591865
    30323 1mik:A (1.76) BS01 peptide 5.2.1.8 GO:0000413 ... P62937 7650689
    30324 1mio:A (3.0) BS01 CFM 1.18.6.1 GO:0005524 ... P00467 8393705
    30325 1mio:A (3.0) BS02 CLP 1.18.6.1 GO:0005524 ... P00467 8393705
    30326 1mio:B (3.0) BS01 CA 1.18.6.1 GO:0005524 ... P11347 8393705
    30327 1mio:B (3.0) BS02 CLP 1.18.6.1 GO:0005524 ... P11347 8393705
    30328 1mio:B (3.0) BS03 CA 1.18.6.1 GO:0005524 ... P11347 8393705
    30329 1mio:C (3.0) BS01 CFM 1.18.6.1 GO:0005524 ... P00467 8393705
    30330 1mio:C (3.0) BS02 CLP 1.18.6.1 GO:0005524 ... P00467 8393705
    30331 1mio:D (3.0) BS01 CA 1.18.6.1 GO:0005524 ... P11347 8393705
    30332 1mio:D (3.0) BS02 CA 1.18.6.1 GO:0005524 ... P11347 8393705
    30333 1mio:D (3.0) BS03 CLP 1.18.6.1 GO:0005524 ... P11347 8393705
    30334 1miw:A (3.0) BS01 ATP 2.7.7.72 GO:0000049 ... Q7SIB1 12526808
    30335 1miw:B (3.0) BS01 ATP 2.7.7.72 GO:0000049 ... Q7SIB1 12526808
    30336 1miy:A (3.52) BS01 MG 2.7.7.72 GO:0000049 ... Q7SIB1 12526808
    30337 1miy:A (3.52) BS02 CTP 2.7.7.72 GO:0000049 ... Q7SIB1 12526808
    30338 1miy:B (3.52) BS01 CTP 2.7.7.72 GO:0000049 ... Q7SIB1 12526808
    30339 1mj1:A (13.0) BS01 rna ? GO:0003746 ... Q01698 12379845
    30340 1mj1:O (13.0) BS01 rna ? GO:0000049 ... Q5SHN3 12379845
    30341 1mj2:A (2.4) BS01 dna ? GO:0003677 ... P0A8U6 10986458
    30342 1mj2:A (2.4) BS02 dna ? GO:0003677 ... P0A8U6 10986458
    30343 1mj2:A (2.4) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    30344 1mj2:A (2.4) BS04 SAM ? GO:0003677 ... P0A8U6 10986458
    30345 1mj2:B (2.4) BS01 dna ? GO:0003677 ... P0A8U6 10986458
    30346 1mj2:B (2.4) BS02 dna ? GO:0003677 ... P0A8U6 10986458
    30347 1mj2:B (2.4) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    30348 1mj2:B (2.4) BS04 SAM ? GO:0003677 ... P0A8U6 10986458
    30349 1mj2:B (2.4) BS05 CA ? GO:0003677 ... P0A8U6 10986458
    30350 1mj2:C (2.4) BS01 dna ? GO:0003677 ... P0A8U6 10986458
    30351 1mj2:C (2.4) BS02 dna ? GO:0003677 ... P0A8U6 10986458
    30352 1mj2:C (2.4) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    30353 1mj2:C (2.4) BS04 SAM ? GO:0003677 ... P0A8U6 10986458
    30354 1mj2:D (2.4) BS01 dna ? GO:0003677 ... P0A8U6 10986458
    30355 1mj2:D (2.4) BS02 dna ? GO:0003677 ... P0A8U6 10986458
    30356 1mj2:D (2.4) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    30357 1mj2:D (2.4) BS04 SAM ? GO:0003677 ... P0A8U6 10986458
    30358 1mj3:A (2.1) BS01 HXC 4.2.1.17
    5.3.3.8
    GO:0003824 ... P14604 12445775
    30359 1mj3:B (2.1) BS01 HXC 4.2.1.17
    5.3.3.8
    GO:0003824 ... P14604 12445775
    30360 1mj3:B (2.1) BS02 HXC 4.2.1.17
    5.3.3.8
    GO:0003824 ... P14604 12445775
    30361 1mj3:C (2.1) BS01 HXC 4.2.1.17
    5.3.3.8
    GO:0003824 ... P14604 12445775
    30362 1mj3:C (2.1) BS02 HXC 4.2.1.17
    5.3.3.8
    GO:0003824 ... P14604 12445775
    30363 1mj3:E (2.1) BS01 HXC 4.2.1.17
    5.3.3.8
    GO:0003824 ... P14604 12445775
    30364 1mj3:F (2.1) BS01 HXC 4.2.1.17
    5.3.3.8
    GO:0003824 ... P14604 12445775
    30365 1mj3:F (2.1) BS02 HXC 4.2.1.17
    5.3.3.8
    GO:0003824 ... P14604 12445775
    30366 1mj4:A (1.2) BS01 HEM 1.8.3.1 GO:0020037 ... P51687 12832761
    30367 1mj9:A (2.5) BS01 COA 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q08649 12368900
    30368 1mja:A (2.26) BS01 COA 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q08649 12368900
    30369 1mjb:A (2.5) BS01 ACO 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q08649 12368900
    30370 1mje:A (3.5) BS01 dna ? GO:0000724 ... P97929 12228710
    30371 1mjg:A (2.2) BS01 SF4 1.2.7.4 GO:0003824 ... P27989 12386327
    30372 1mjg:A (2.2) BS02 SF4 1.2.7.4 GO:0003824 ... P27989 12386327
    30373 1mjg:A (2.2) BS03 XCC 1.2.7.4 GO:0003824 ... P27989 12386327
    30374 1mjg:B (2.2) BS01 SF4 1.2.7.4 GO:0003824 ... P27989 12386327
    30375 1mjg:B (2.2) BS02 SF4 1.2.7.4 GO:0003824 ... P27989 12386327
    30376 1mjg:B (2.2) BS03 XCC 1.2.7.4 GO:0003824 ... P27989 12386327
    30377 1mjg:C (2.2) BS01 SF4 1.2.7.4 GO:0003824 ... P27989 12386327
    30378 1mjg:C (2.2) BS02 SF4 1.2.7.4 GO:0003824 ... P27989 12386327
    30379 1mjg:C (2.2) BS03 XCC 1.2.7.4 GO:0003824 ... P27989 12386327
    30380 1mjg:D (2.2) BS01 SF4 1.2.7.4 GO:0003824 ... P27989 12386327
    30381 1mjg:D (2.2) BS02 SF4 1.2.7.4 GO:0003824 ... P27989 12386327
    30382 1mjg:D (2.2) BS03 XCC 1.2.7.4 GO:0003824 ... P27989 12386327
    30383 1mjg:M (2.2) BS01 CU1 2.3.1.169 GO:0003824 ... P27988 12386327
    30384 1mjg:M (2.2) BS02 SF4 2.3.1.169 GO:0003824 ... P27988 12386327
    30385 1mjg:N (2.2) BS01 CU1 2.3.1.169 GO:0003824 ... P27988 12386327
    30386 1mjg:N (2.2) BS02 SF4 2.3.1.169 GO:0003824 ... P27988 12386327
    30387 1mjg:O (2.2) BS01 CU1 2.3.1.169 GO:0003824 ... P27988 12386327
    30388 1mjg:O (2.2) BS02 SF4 2.3.1.169 GO:0003824 ... P27988 12386327
    30389 1mjg:P (2.2) BS01 CU1 2.3.1.169 GO:0003824 ... P27988 12386327
    30390 1mjg:P (2.2) BS02 SF4 2.3.1.169 GO:0003824 ... P27988 12386327
    30391 1mjh:A (1.7) BS01 ATP ? GO:0005524 ... Q57997 9860944
    30392 1mjh:B (1.7) BS01 ATP ? GO:0005524 ... Q57997 9860944
    30393 1mji:A (2.5) BS01 rna ? GO:0000049 ... P41201 12515387
    30394 1mji:A (2.5) BS02 rna ? GO:0000049 ... P41201 12515387
    30395 1mji:A (2.5) BS03 MG ? GO:0000049 ... P41201 12515387
    30396 1mji:B (2.5) BS01 rna ? GO:0000049 ... P41201 12515387
    30397 1mji:B (2.5) BS02 rna ? GO:0000049 ... P41201 12515387
    30398 1mji:B (2.5) BS03 MG ? GO:0000049 ... P41201 12515387
    30399 1mjl:A (2.1) BS01 SAM ? GO:0003677 ... P0A8U6 N/A
    30400 1mjl:A (2.1) BS02 SAM ? GO:0003677 ... P0A8U6 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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