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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    28401 1lrj:A (1.9) BS01 NAD 5.1.3.2 GO:0003978 ... P09147 12019271
    28402 1lrj:A (1.9) BS02 UD1 5.1.3.2 GO:0003978 ... P09147 12019271
    28403 1lrk:A (1.75) BS01 NAD 5.1.3.2 GO:0003978 ... P09147 12019271
    28404 1lrk:A (1.75) BS02 UD1 5.1.3.2 GO:0003978 ... P09147 12019271
    28405 1lrl:A (1.8) BS01 NAD 5.1.3.2 GO:0003978 ... P09147 12019271
    28406 1lrl:A (1.8) BS02 UPG 5.1.3.2 GO:0003978 ... P09147 12019271
    28407 1lrm:A (2.1) BS01 FE 1.14.16.1 GO:0004497 ... P00439 N/A
    28408 1lrm:A (2.1) BS02 HBI 1.14.16.1 GO:0004497 ... P00439 N/A
    28409 1lrn:A (2.1) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 12441100
    28410 1lrn:B (2.1) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 12441100
    28411 1lro:A (1.8) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 12441100
    28412 1lro:B (1.8) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 12441100
    28413 1lrq:A (1.8) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 12441100
    28414 1lrq:A (1.8) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 12441100
    28415 1lrq:B (1.8) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 12441100
    28416 1lrr:A (2.65) BS01 dna ? GO:0003677 ... P0AFY8 12379844 PDBbind: Kd=7uM
    28417 1lrr:A (2.65) BS02 dna ? GO:0003677 ... P0AFY8 12379844 PDBbind: Kd=7uM
    28418 1lrr:D (2.65) BS01 dna ? GO:0003677 ... P0AFY8 12379844 PDBbind: Kd=7uM
    28419 1lrr:D (2.65) BS02 dna ? GO:0003677 ... P0AFY8 12379844 PDBbind: Kd=7uM
    28420 1lrt:A (2.2) BS01 IMP 1.1.1.205 GO:0003824 ... P50097 12403633
    28421 1lrt:A (2.2) BS02 TAD 1.1.1.205 GO:0003824 ... P50097 12403633 MOAD: Ki=2.3uM
    PDBbind: -logKd/Ki=5.64, Ki=2.3uM
    28422 1lrt:B (2.2) BS01 IMP 1.1.1.205 GO:0003824 ... P50097 12403633
    28423 1lrt:B (2.2) BS02 TAD 1.1.1.205 GO:0003824 ... P50097 12403633 MOAD: Ki=2.3uM
    PDBbind: -logKd/Ki=5.64, Ki=2.3uM
    28424 1lrt:C (2.2) BS01 IMP 1.1.1.205 GO:0003824 ... P50097 12403633
    28425 1lrt:C (2.2) BS02 TAD 1.1.1.205 GO:0003824 ... P50097 12403633 MOAD: Ki=2.3uM
    28426 1lrt:D (2.2) BS01 IMP 1.1.1.205 GO:0003824 ... P50097 12403633
    28427 1lrt:D (2.2) BS02 TAD 1.1.1.205 GO:0003824 ... P50097 12403633 MOAD: Ki=2.3uM
    28428 1lru:A (2.1) BS01 ZN 3.5.1.88 GO:0005515 ... P0A6K3 12126617
    28429 1lru:A (2.1) BS02 BB2 3.5.1.88 GO:0005515 ... P0A6K3 12126617
    28430 1lru:B (2.1) BS01 ZN 3.5.1.88 GO:0005515 ... P0A6K3 12126617
    28431 1lru:B (2.1) BS02 BB2 3.5.1.88 GO:0005515 ... P0A6K3 12126617
    28432 1lru:C (2.1) BS01 ZN 3.5.1.88 GO:0005515 ... P0A6K3 12126617
    28433 1lru:C (2.1) BS02 BB2 3.5.1.88 GO:0005515 ... P0A6K3 12126617
    28434 1lrw:A (2.5) BS01 CA 1.1.2.7 GO:0005509 ... P12293 14505072
    28435 1lrw:A (2.5) BS02 PQQ 1.1.2.7 GO:0005509 ... P12293 14505072
    28436 1lrw:C (2.5) BS01 CA 1.1.2.7 GO:0005509 ... P12293 14505072
    28437 1lrw:C (2.5) BS02 PQQ 1.1.2.7 GO:0005509 ... P12293 14505072
    28438 1lry:A (2.6) BS01 ZN 3.5.1.88 GO:0006412 ... Q9I7A8 12126617
    28439 1lry:A (2.6) BS02 BB2 3.5.1.88 GO:0006412 ... Q9I7A8 12126617
    28440 1ls1:A (1.1) BS01 OXY 3.6.5.4 GO:0003924 ... O07347 12095255
    28441 1ls1:A (1.1) BS02 OXY 3.6.5.4 GO:0003924 ... O07347 12095255
    28442 1ls3:A (2.7) BS01 PLP 2.1.2.1 GO:0000900 ... P07511 12438316
    28443 1ls3:A (2.7) BS02 GLY 2.1.2.1 GO:0000900 ... P07511 12438316
    28444 1ls3:A (2.7) BS03 PLP 2.1.2.1 GO:0000900 ... P07511 12438316
    28445 1ls3:A (2.7) BS04 TGF 2.1.2.1 GO:0000900 ... P07511 12438316
    28446 1ls3:B (2.7) BS01 PLP 2.1.2.1 GO:0000900 ... P07511 12438316
    28447 1ls3:B (2.7) BS02 PLP 2.1.2.1 GO:0000900 ... P07511 12438316
    28448 1ls3:B (2.7) BS03 TGF 2.1.2.1 GO:0000900 ... P07511 12438316
    28449 1ls3:C (2.7) BS01 GLY 2.1.2.1 GO:0000900 ... P07511 12438316
    28450 1ls3:C (2.7) BS02 PLP 2.1.2.1 GO:0000900 ... P07511 12438316
    28451 1ls3:C (2.7) BS03 PLP 2.1.2.1 GO:0000900 ... P07511 12438316
    28452 1ls3:C (2.7) BS04 TGF 2.1.2.1 GO:0000900 ... P07511 12438316
    28453 1ls3:D (2.7) BS01 PLP 2.1.2.1 GO:0000900 ... P07511 12438316
    28454 1ls3:D (2.7) BS02 PLP 2.1.2.1 GO:0000900 ... P07511 12438316
    28455 1ls3:D (2.7) BS03 TGF 2.1.2.1 GO:0000900 ... P07511 12438316
    28456 1ls5:A (2.8) BS01 peptide 3.4.23.39 GO:0004190 ... Q8IM16 12614616
    28457 1ls5:B (2.8) BS01 peptide 3.4.23.39 GO:0004190 ... Q8IM16 12614616
    28458 1ls6:A (1.9) BS01 A3P 2.8.2.1 GO:0004062 ... P50225 12471039
    28459 1ls6:A (1.9) BS02 NPO 2.8.2.1 GO:0004062 ... P50225 12471039
    28460 1ls6:A (1.9) BS03 NPO 2.8.2.1 GO:0004062 ... P50225 12471039
    28461 1ls9:A (1.3) BS01 HEM ? GO:0005506 ... P83391 12475218
    28462 1lsj:A (2.5) BS01 NAD 1.1.1.35 GO:0003857 ... Q16836 N/A
    28463 1lsj:B (2.5) BS01 NAD 1.1.1.35 GO:0003857 ... Q16836 N/A
    28464 1lso:A (2.6) BS01 NAD 1.1.1.35 GO:0003857 ... Q16836 N/A
    28465 1lso:B (2.6) BS01 NAD 1.1.1.35 GO:0003857 ... Q16836 N/A
    28466 1lsp:A (2.45) BS01 BUL 3.2.1.17 GO:0003796 ... P00717 15299731
    28467 1lss:A (2.3) BS01 NAD ? GO:0005886 ... Q58505 12086676
    28468 1lss:B (2.3) BS01 NAD ? GO:0005886 ... Q58505 12086676
    28469 1lss:C (2.3) BS01 NAD ? GO:0005886 ... Q58505 12086676
    28470 1lss:D (2.3) BS01 NAD ? GO:0005886 ... Q58505 12086676
    28471 1lst:A (1.8) BS01 LYS ? GO:0006865 ... P02911 8496186 PDBbind: -logKd/Ki=7.85, Kd=14nM
    28472 1lsu:A (2.85) BS01 NAI ? GO:0006813 ... O32080 12086676
    28473 1lsu:B (2.85) BS01 NAI ? GO:0006813 ... O32080 12086676
    28474 1lsv:A (2.4) BS01 HEM 2.7.13.3 GO:0006355 ... P23222 12390021
    28475 1lsw:A (2.2) BS01 HEM 2.7.13.3 GO:0006355 ... P23222 12390021
    28476 1lsx:A (2.7) BS01 HEM 2.7.13.3 GO:0006355 ... P23222 12390021
    28477 1lsx:A (2.7) BS02 1MZ 2.7.13.3 GO:0006355 ... P23222 12390021
    28478 1lsz:A (2.0) BS01 NAG 3.2.1.17 GO:0003796 ... P00698 7966306
    28479 1lsz:A (2.0) BS02 NAG 3.2.1.17 GO:0003796 ... P00698 7966306
    28480 1lsz:A (2.0) BS03 NAG 3.2.1.17 GO:0003796 ... P00698 7966306
    28481 1lt0:A (2.4) BS01 CYN 2.7.13.3 GO:0006355 ... P23222 12390021
    28482 1lt0:A (2.4) BS02 HEM 2.7.13.3 GO:0006355 ... P23222 12390021
    28483 1lt3:D (2.0) BS01 GAL ? GO:0005576 ... P32890 9416616
    28484 1lt3:E (2.0) BS01 GAL ? GO:0005576 ... P32890 9416616
    28485 1lt3:F (2.0) BS01 GAL ? GO:0005576 ... P32890 9416616
    28486 1lt3:G (2.0) BS01 GAL ? GO:0005576 ... P32890 9416616
    28487 1lt3:H (2.0) BS01 GAL ? GO:0005576 ... P32890 9416616
    28488 1lt4:D (2.0) BS01 GAL ? GO:0005576 ... P32890 9416617
    28489 1lt4:E (2.0) BS01 GAL ? GO:0005576 ... P32890 9416617
    28490 1lt4:F (2.0) BS01 GAL ? GO:0005576 ... P32890 9416617
    28491 1lt4:G (2.0) BS01 GAL ? GO:0005576 ... P32890 9416617
    28492 1lt4:H (2.0) BS01 GAL ? GO:0005576 ... P32890 9416617
    28493 1lt5:D (1.7) BS01 YIO ? GO:0005576 ... P32890 9384564
    28494 1lt5:E (1.7) BS01 YIO ? GO:0005576 ... P32890 9384564
    28495 1lt5:F (1.7) BS01 YIO ? GO:0005576 ... P32890 9384564
    28496 1lt5:F (1.7) BS02 GAL ? GO:0005576 ... P32890 9384564
    28497 1lt5:G (1.7) BS01 YIO ? GO:0005576 ... P32890 9384564
    28498 1lt5:H (1.7) BS01 YIO ? GO:0005576 ... P32890 9384564
    28499 1lt6:D (2.2) BS01 GAA ? GO:0005576 ... P32890 9384564 PDBbind: -logKd/Ki=3.30, IC50=0.5mM
    28500 1lt6:E (2.2) BS01 GAA ? GO:0005576 ... P32890 9384564 PDBbind: -logKd/Ki=3.30, IC50=0.5mM
    28501 1lt6:F (2.2) BS01 GAA ? GO:0005576 ... P32890 9384564
    28502 1lt6:G (2.2) BS01 GAA ? GO:0005576 ... P32890 9384564
    28503 1lt6:H (2.2) BS01 GAA ? GO:0005576 ... P32890 9384564
    28504 1lt6:L (2.2) BS01 GAA ? GO:0005576 ... P32890 9384564
    28505 1lt6:M (2.2) BS01 GAA ? GO:0005576 ... P32890 9384564
    28506 1lt6:N (2.2) BS01 GAA ? GO:0005576 ... P32890 9384564
    28507 1lt6:O (2.2) BS01 GAA ? GO:0005576 ... P32890 9384564
    28508 1lt6:P (2.2) BS01 GAA ? GO:0005576 ... P32890 9384564
    28509 1lt8:A (2.05) BS01 ZN 2.1.1.5 GO:0005634 ... Q93088 12220488
    28510 1lt8:A (2.05) BS02 CBH 2.1.1.5 GO:0005634 ... Q93088 12220488 BindingDB: Kd=280nM, Ki=12nM, IC50=87nM
    28511 1lt8:B (2.05) BS01 ZN 2.1.1.5 GO:0005634 ... Q93088 12220488
    28512 1lt8:B (2.05) BS02 CBH 2.1.1.5 GO:0005634 ... Q93088 12220488 BindingDB: Kd=280nM, Ki=12nM, IC50=87nM
    28513 1lt9:B (2.8) BS01 CA ? GO:0005102 ... P02675 12356313
    28514 1lt9:B (2.8) BS02 CA ? GO:0005102 ... P02675 12356313
    28515 1lt9:C (2.8) BS01 CA ? GO:0005102 ... P02679 12356313
    28516 1lt9:E (2.8) BS01 CA ? GO:0005102 ... P02675 12356313
    28517 1lt9:E (2.8) BS02 CA ? GO:0005102 ... P02675 12356313
    28518 1lt9:F (2.8) BS01 CA ? GO:0005102 ... P02679 12356313
    28519 1lta:D (2.2) BS01 GAL ? GO:0005576 ... P32890 7997185
    28520 1lta:E (2.2) BS01 GAL ? GO:0005576 ... P32890 7997185
    28521 1lta:F (2.2) BS01 GAL ? GO:0005576 ... P32890 7997185
    28522 1lta:G (2.2) BS01 GAL ? GO:0005576 ... P32890 7997185
    28523 1lta:H (2.2) BS01 GAL ? GO:0005576 ... P32890 7997185
    28524 1ltd:A (2.6) BS01 SO3 1.1.2.3 GO:0016491 ... P00175 8003966
    28525 1ltd:A (2.6) BS02 FMN 1.1.2.3 GO:0016491 ... P00175 8003966
    28526 1ltd:A (2.6) BS03 HEM 1.1.2.3 GO:0016491 ... P00175 8003966
    28527 1ltd:B (2.6) BS01 SO3 1.1.2.3 GO:0016491 ... P00175 8003966
    28528 1ltd:B (2.6) BS02 FMN 1.1.2.3 GO:0016491 ... P00175 8003966
    28529 1lte:A (2.0) BS01 BGC ? GO:0030246 ... P16404 1948067
    28530 1lte:A (2.0) BS02 GAL ? GO:0030246 ... P16404 1948067
    28531 1lte:A (2.0) BS03 MN ? GO:0030246 ... P16404 1948067
    28532 1lte:A (2.0) BS04 CA ? GO:0030246 ... P16404 1948067
    28533 1lth:R (2.5) BS01 FBP 1.1.1.27 GO:0003824 ... E8ME30 7656036
    28534 1lth:R (2.5) BS02 NAD 1.1.1.27 GO:0003824 ... E8ME30 7656036
    28535 1lth:T (2.5) BS01 FBP 1.1.1.27 GO:0003824 ... E8ME30 7656036
    28536 1lth:T (2.5) BS02 NAD 1.1.1.27 GO:0003824 ... E8ME30 7656036
    28537 1lti:D (2.13) BS01 GAL ? GO:0005576 ... P32890 8762150
    28538 1lti:E (2.13) BS01 GAL ? GO:0005576 ... P32890 8762150
    28539 1lti:G (2.13) BS01 GAL ? GO:0005576 ... P32890 8762150
    28540 1lti:H (2.13) BS01 GAL ? GO:0005576 ... P32890 8762150
    28541 1ltj:B (2.8) BS01 peptide ? GO:0005102 ... P02675 12356313
    28542 1ltj:B (2.8) BS02 CA ? GO:0005102 ... P02675 12356313
    28543 1ltj:C (2.8) BS01 peptide ? GO:0005102 ... P02679 12356313
    28544 1ltj:C (2.8) BS02 CA ? GO:0005102 ... P02679 12356313
    28545 1ltj:E (2.8) BS01 peptide ? GO:0005102 ... P02675 12356313
    28546 1ltj:E (2.8) BS02 CA ? GO:0005102 ... P02675 12356313
    28547 1ltj:F (2.8) BS01 peptide ? GO:0005102 ... P02679 12356313
    28548 1ltj:F (2.8) BS02 CA ? GO:0005102 ... P02679 12356313
    28549 1ltk:A (3.0) BS01 AMP 2.7.2.3 GO:0004618 ... P27362 N/A
    28550 1ltk:B (3.0) BS01 AMP 2.7.2.3 GO:0004618 ... P27362 N/A
    28551 1ltk:C (3.0) BS01 AMP 2.7.2.3 GO:0004618 ... P27362 N/A
    28552 1ltl:A (3.0) BS01 ZN 3.6.4.12 GO:0003677 ... O27798 12548282
    28553 1ltl:B (3.0) BS01 ZN 3.6.4.12 GO:0003677 ... O27798 12548282
    28554 1ltl:C (3.0) BS01 ZN 3.6.4.12 GO:0003677 ... O27798 12548282
    28555 1ltl:D (3.0) BS01 ZN 3.6.4.12 GO:0003677 ... O27798 12548282
    28556 1ltl:E (3.0) BS01 ZN 3.6.4.12 GO:0003677 ... O27798 12548282
    28557 1ltl:F (3.0) BS01 ZN 3.6.4.12 GO:0003677 ... O27798 12548282
    28558 1ltq:A (2.33) BS01 ADP 2.7.1.78
    3.1.3.34    		 GO:0005524 ... P06855 12220496
    28559 1ltt:D (2.3) BS01 GAL ? GO:0005576 ... P32890 1741035
    28560 1ltt:E (2.3) BS01 GAL ? GO:0005576 ... P32890 1741035
    28561 1ltt:F (2.3) BS01 GAL ? GO:0005576 ... P32890 1741035
    28562 1ltt:G (2.3) BS01 GAL ? GO:0005576 ... P32890 1741035
    28563 1ltt:H (2.3) BS01 GAL ? GO:0005576 ... P32890 1741035
    28564 1ltv:A (2.0) BS01 FE 1.14.16.1 GO:0004497 ... P30967 12096915
    28565 1ltw:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 N/A
    28566 1ltw:A (1.7) BS02 OXY 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 N/A
    28567 1ltx:B (2.7) BS01 peptide 2.5.1.60 GO:0003824 ... Q08603 12620235
    28568 1ltx:B (2.7) BS02 ZN 2.5.1.60 GO:0003824 ... Q08603 12620235
    28569 1ltx:B (2.7) BS03 FAR 2.5.1.60 GO:0003824 ... Q08603 12620235
    28570 1ltz:A (1.4) BS01 FE 1.14.16.1 GO:0004497 ... P30967 12096915
    28571 1ltz:A (1.4) BS02 HBI 1.14.16.1 GO:0004497 ... P30967 12096915
    28572 1lu1:A (2.6) BS01 CA ? GO:0005537 ... P05045 10047489
    28573 1lu1:A (2.6) BS02 MN ? GO:0005537 ... P05045 10047489
    28574 1lu1:A (2.6) BS03 ADE ? GO:0005537 ... P05045 10047489
    28575 1lu2:A (2.8) BS01 CA ? GO:0005537 ... P05045 10047489
    28576 1lu2:A (2.8) BS02 MN ? GO:0005537 ... P05045 10047489
    28577 1lu2:B (2.8) BS01 CA ? GO:0005537 ... P05045 10047489
    28578 1lu2:B (2.8) BS02 MN ? GO:0005537 ... P05045 10047489
    28579 1lua:A (1.9) BS01 NAP 1.5.1.-
    1.5.1.5    		 GO:0004488 ... P55818 12176390
    28580 1lua:B (1.9) BS01 NAP 1.5.1.-
    1.5.1.5    		 GO:0004488 ... P55818 12176390
    28581 1lua:C (1.9) BS01 NAP 1.5.1.-
    1.5.1.5    		 GO:0004488 ... P55818 12176390
    28582 1lud:A (-1.00) BS01 NDP 1.5.1.3 GO:0004146 ... P00381 12449420
    28583 1lud:A (-1.00) BS02 TRR 1.5.1.3 GO:0004146 ... P00381 12449420
    28584 1lue:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 12939145
    28585 1lug:A (0.95) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 20445237
    28586 1lug:A (0.95) BS02 SUA 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 20445237
    28587 1lul:A (3.3) BS01 MN ? GO:0005537 ... P19588 10047489
    28588 1lul:A (3.3) BS02 CA ? GO:0005537 ... P19588 10047489
    28589 1lul:B (3.3) BS01 MN ? GO:0005537 ... P19588 10047489
    28590 1lul:B (3.3) BS02 CA ? GO:0005537 ... P19588 10047489
    28591 1lul:C (3.3) BS01 MN ? GO:0005537 ... P19588 10047489
    28592 1lul:C (3.3) BS02 CA ? GO:0005537 ... P19588 10047489
    28593 1lul:D (3.3) BS01 MN ? GO:0005537 ... P19588 10047489
    28594 1lul:D (3.3) BS02 CA ? GO:0005537 ... P19588 10047489
    28595 1lul:E (3.3) BS01 MN ? GO:0005537 ... P19588 10047489
    28596 1lul:E (3.3) BS02 CA ? GO:0005537 ... P19588 10047489
    28597 1lul:F (3.3) BS01 MN ? GO:0005537 ... P19588 10047489
    28598 1lul:F (3.3) BS02 CA ? GO:0005537 ... P19588 10047489
    28599 1luq:A (0.96) BS01 BTN ? GO:0009374 ... P22629 N/A BindingDB: Kd=1.000000nM
    28600 1luq:B (0.96) BS01 BTN ? GO:0009374 ... P22629 N/A BindingDB: Kd=1.000000nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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