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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    27601 1len:C (1.8) BS03 CA ? GO:0030246 ... P02870 7731952
    27602 1les:A (1.9) BS01 GLC ? GO:0030246 ... P02870 7592736
    27603 1les:A (1.9) BS02 CA ? GO:0030246 ... P02870 7592736
    27604 1les:A (1.9) BS03 MN ? GO:0030246 ... P02870 7592736
    27605 1les:B (1.9) BS01 GLC ? GO:0030246 ... P02870 7592736
    27606 1les:C (1.9) BS01 GLC ? GO:0030246 ... P02870 7592736
    27607 1les:C (1.9) BS02 CA ? GO:0030246 ... P02870 7592736
    27608 1les:C (1.9) BS03 MN ? GO:0030246 ... P02870 7592736
    27609 1les:D (1.9) BS01 GLC ? GO:0030246 ... P02870 7592736
    27610 1lev:A (2.15) BS01 F6P 3.1.3.11 GO:0005737 ... P00636 12781194
    27611 1lev:A (2.15) BS02 MN 3.1.3.11 GO:0005737 ... P00636 12781194
    27612 1lev:A (2.15) BS03 MN 3.1.3.11 GO:0005737 ... P00636 12781194
    27613 1lev:A (2.15) BS04 CLI 3.1.3.11 GO:0005737 ... P00636 12781194 MOAD: ic50=2.5uM
    PDBbind: -logKd/Ki=5.60, IC50=2.5uM
    27614 1lev:F (2.15) BS01 F6P 3.1.3.11 GO:0005737 ... P00636 12781194
    27615 1lev:F (2.15) BS02 MN 3.1.3.11 GO:0005737 ... P00636 12781194
    27616 1lev:F (2.15) BS03 MN 3.1.3.11 GO:0005737 ... P00636 12781194
    27617 1lev:F (2.15) BS04 CLI 3.1.3.11 GO:0005737 ... P00636 12781194 MOAD: ic50=2.5uM
    27618 1lew:A (2.3) BS01 peptide 2.7.11.24 GO:0000077 ... P47811 12086621
    27619 1lez:A (2.3) BS01 peptide 2.7.11.24 GO:0000077 ... P47811 12086621
    27620 1lf0:A (1.7) BS01 MG 3.6.5.2 GO:0003924 ... P01112 12213964
    27621 1lf0:A (1.7) BS02 CA 3.6.5.2 GO:0003924 ... P01112 12213964
    27622 1lf0:A (1.7) BS03 CA 3.6.5.2 GO:0003924 ... P01112 12213964
    27623 1lf0:A (1.7) BS04 GNP 3.6.5.2 GO:0003924 ... P01112 12213964
    27624 1lf2:A (1.8) BS01 R37 3.4.23.39 GO:0004190 ... P46925 12454457 PDBbind: -logKd/Ki=7.52, Ki=30nM
    27625 1lf3:A (2.7) BS01 EH5 3.4.23.39 GO:0004190 ... P46925 12614616 PDBbind: -logKd/Ki=7.00, Ki=100nM
    27626 1lf5:A (1.7) BS01 GDP 3.6.5.2 GO:0003924 ... P01112 12213964
    27627 1lf8:A (2.3) BS01 peptide ? GO:0005802 ... Q9NZ52 12032548
    27628 1lf8:B (2.3) BS01 peptide ? GO:0005802 ... Q9NZ52 12032548
    27629 1lf8:C (2.3) BS01 peptide ? GO:0005802 ... Q9NZ52 12032548
    27630 1lf8:D (2.3) BS01 peptide ? GO:0005802 ... Q9NZ52 12032548
    27631 1lf9:A (2.2) BS01 GLC 3.2.1.3 GO:0003824 ... O85672 12614608
    27632 1lf9:A (2.2) BS02 AC1 3.2.1.3 GO:0003824 ... O85672 12614608
    27633 1lf9:B (2.2) BS01 GLC 3.2.1.3 GO:0003824 ... O85672 12614608
    27634 1lf9:B (2.2) BS02 AC1 3.2.1.3 GO:0003824 ... O85672 12614608
    27635 1lfd:B (2.1) BS01 MG 3.6.5.2 GO:0003924 ... P01112 9628477
    27636 1lfd:B (2.1) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 9628477
    27637 1lfd:D (2.1) BS01 MG 3.6.5.2 GO:0003924 ... P01112 9628477
    27638 1lfd:D (2.1) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 9628477
    27639 1lfg:A (2.2) BS01 FE 3.4.21.- GO:0001503 ... P02788 15299793
    27640 1lfg:A (2.2) BS02 FE 3.4.21.- GO:0001503 ... P02788 15299793
    27641 1lfg:A (2.2) BS03 CO3 3.4.21.- GO:0001503 ... P02788 15299793
    27642 1lfg:A (2.2) BS04 CO3 3.4.21.- GO:0001503 ... P02788 15299793
    27643 1lfi:A (2.1) BS01 CU 3.4.21.- GO:0001503 ... P02788 1581307
    27644 1lfi:A (2.1) BS02 CU 3.4.21.- GO:0001503 ... P02788 1581307
    27645 1lfi:A (2.1) BS03 CO3 3.4.21.- GO:0001503 ... P02788 1581307
    27646 1lfi:A (2.1) BS04 CO3 3.4.21.- GO:0001503 ... P02788 1581307
    27647 1lfk:A (1.7) BS01 HEM 1.14.-.- GO:0004497 ... Q8RN04 12207020
    27648 1lfl:A (2.7) BS01 HEM ? GO:0004601 ... P69905 12077435
    27649 1lfl:B (2.7) BS01 HEM ? GO:0004601 ... P68871 12077435
    27650 1lfl:C (2.7) BS01 HEM ? GO:0004601 ... P69905 12077435
    27651 1lfl:D (2.7) BS01 HEM ? GO:0004601 ... P68871 12077435
    27652 1lfl:P (2.7) BS01 HEM ? GO:0004601 ... P69905 12077435
    27653 1lfl:Q (2.7) BS01 HEM ? GO:0004601 ... P68871 12077435
    27654 1lfl:R (2.7) BS01 HEM ? GO:0004601 ... P69905 12077435
    27655 1lfl:S (2.7) BS01 HEM ? GO:0004601 ... P68871 12077435
    27656 1lfm:A (1.5) BS01 COH ? GO:0005739 ... P81459 12084923
    27657 1lfm:B (1.5) BS01 COH ? GO:0005739 ... P81459 12084923
    27658 1lfo:A (2.3) BS01 OLA ? GO:0003682 ... P02692 9054409 MOAD: Kd~2uM
    PDBbind: -logKd/Ki=6.70, Kd~0.2uM
    BindingDB: Ki=2900nM
    27659 1lfo:A (2.3) BS02 OLA ? GO:0003682 ... P02692 9054409 MOAD: Kd~2uM
    PDBbind: -logKd/Ki=6.70, Kd~0.2uM
    BindingDB: Ki=2900nM
    27660 1lfo:A (2.3) BS03 BEO ? GO:0003682 ... P02692 9054409
    27661 1lfq:A (2.6) BS01 HEM ? GO:0004601 ... P69905 12077435
    27662 1lfq:B (2.6) BS01 HEM ? GO:0004601 ... P68871 12077435
    27663 1lft:A (2.6) BS01 HEM ? GO:0004601 ... P69905 12077435
    27664 1lft:B (2.6) BS01 HEM ? GO:0004601 ... P68871 12077435
    27665 1lfu:P (-1.00) BS01 dna ? GO:0000981 ... P41778 12409300
    27666 1lfu:P (-1.00) BS02 dna ? GO:0000981 ... P41778 12409300
    27667 1lfv:A (2.8) BS01 HEM ? GO:0004601 ... P69905 12077435
    27668 1lfv:B (2.8) BS01 HEM ? GO:0004601 ... P68871 12077435
    27669 1lfw:A (1.8) BS01 ZN 3.4.13.- GO:0005737 ... P45494 12176387
    27670 1lfw:A (1.8) BS02 ZN 3.4.13.- GO:0005737 ... P45494 12176387
    27671 1lfw:A (1.8) BS03 AEP 3.4.13.- GO:0005737 ... P45494 12176387
    27672 1lfy:A (3.3) BS01 HEM ? GO:0004601 ... P69905 12077435
    27673 1lfy:B (3.3) BS01 HEM ? GO:0004601 ... P68871 12077435
    27674 1lfz:A (3.1) BS01 HEM ? GO:0004601 ... P69905 12077435
    27675 1lfz:B (3.1) BS01 HEM ? GO:0004601 ... P68871 12077435
    27676 1lg5:A (1.75) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 12056894
    27677 1lg5:A (1.75) BS02 BME 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 12056894
    27678 1lg6:A (2.2) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 12056894
    27679 1lg6:A (2.2) BS02 SCN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 12056894 BindingDB: Ki=1600000nM
    27680 1lg9:A (2.0) BS01 HEM 1.14.-.- GO:0004497 ... Q8RN04 12207020
    27681 1lga:A (2.03) BS01 CA 1.11.1.14 GO:0000302 ... P49012 8440725
    27682 1lga:A (2.03) BS02 CA 1.11.1.14 GO:0000302 ... P49012 8440725
    27683 1lga:A (2.03) BS03 HEM 1.11.1.14 GO:0000302 ... P49012 8440725
    27684 1lga:B (2.03) BS01 CA 1.11.1.14 GO:0000302 ... P49012 8440725
    27685 1lga:B (2.03) BS02 CA 1.11.1.14 GO:0000302 ... P49012 8440725
    27686 1lga:B (2.03) BS03 HEM 1.11.1.14 GO:0000302 ... P49012 8440725
    27687 1lgb:A (3.3) BS01 MAN ? GO:0005515 ... P04122 8069634
    27688 1lgb:A (3.3) BS02 FUC ? GO:0005515 ... P04122 8069634
    27689 1lgb:A (3.3) BS03 MN ? GO:0005515 ... P04122 8069634
    27690 1lgb:A (3.3) BS04 CA ? GO:0005515 ... P04122 8069634
    27691 1lgb:B (3.3) BS01 MAN ? GO:0005515 ... P12307 8069634
    27692 1lgc:A (2.8) BS01 peptide ? GO:0005515 ... P04122 8069634
    27693 1lgc:A (2.8) BS02 MAN ? GO:0005515 ... P04122 8069634
    27694 1lgc:A (2.8) BS03 CA ? GO:0005515 ... P04122 8069634
    27695 1lgc:A (2.8) BS04 MN ? GO:0005515 ... P04122 8069634
    27696 1lgc:B (2.8) BS01 MAN ? GO:0005515 ... P12307 8069634
    27697 1lgc:C (2.8) BS01 MAN ? GO:0005515 ... P04122 8069634
    27698 1lgc:C (2.8) BS02 FUC ? GO:0005515 ... P04122 8069634
    27699 1lgc:C (2.8) BS03 CA ? GO:0005515 ... P04122 8069634
    27700 1lgc:C (2.8) BS04 MN ? GO:0005515 ... P04122 8069634
    27701 1lgc:D (2.8) BS01 MAN ? GO:0005515 ... P12307 8069634
    27702 1lgc:E (2.8) BS01 MAN ? GO:0005515 ... P04122 8069634
    27703 1lgc:E (2.8) BS02 CA ? GO:0005515 ... P04122 8069634
    27704 1lgc:E (2.8) BS03 MN ? GO:0005515 ... P04122 8069634
    27705 1lgc:F (2.8) BS01 MAN ? GO:0005515 ... P12307 8069634
    27706 1lgd:A (1.9) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 12056894
    27707 1lgd:A (1.9) BS02 BCT 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 12056894 BindingDB: Ki=85000000nM
    27708 1lgf:A (2.2) BS01 HEM 1.14.-.- GO:0004497 ... Q8RN04 12207020
    27709 1lgh:A (2.4) BS01 BCL ? GO:0005886 ... P97253 8736556
    27710 1lgh:A (2.4) BS02 BCL ? GO:0005886 ... P97253 8736556
    27711 1lgh:A (2.4) BS03 LYC ? GO:0005886 ... P97253 8736556
    27712 1lgh:A (2.4) BS04 BCL ? GO:0005886 ... P97253 8736556
    27713 1lgh:B (2.4) BS01 BCL ? GO:0005886 ... P95673 8736556
    27714 1lgh:B (2.4) BS02 BCL ? GO:0005886 ... P95673 8736556
    27715 1lgh:B (2.4) BS03 LYC ? GO:0005886 ... P95673 8736556
    27716 1lgh:B (2.4) BS04 BCL ? GO:0005886 ... P95673 8736556
    27717 1lgh:D (2.4) BS01 LYC ? GO:0005886 ... P97253 8736556
    27718 1lgh:D (2.4) BS02 BCL ? GO:0005886 ... P97253 8736556
    27719 1lgh:D (2.4) BS03 BCL ? GO:0005886 ... P97253 8736556
    27720 1lgh:D (2.4) BS04 LYC ? GO:0005886 ... P97253 8736556
    27721 1lgh:D (2.4) BS05 BCL ? GO:0005886 ... P97253 8736556
    27722 1lgh:E (2.4) BS01 BCL ? GO:0005886 ... P95673 8736556
    27723 1lgh:E (2.4) BS02 BCL ? GO:0005886 ... P95673 8736556
    27724 1lgh:E (2.4) BS03 LYC ? GO:0005886 ... P95673 8736556
    27725 1lgh:E (2.4) BS04 BCL ? GO:0005886 ... P95673 8736556
    27726 1lgh:G (2.4) BS01 BCL ? GO:0005886 ... P97253 8736556
    27727 1lgh:G (2.4) BS02 BCL ? GO:0005886 ... P97253 8736556
    27728 1lgh:G (2.4) BS03 LYC ? GO:0005886 ... P97253 8736556
    27729 1lgh:G (2.4) BS04 BCL ? GO:0005886 ... P97253 8736556
    27730 1lgh:H (2.4) BS01 BCL ? GO:0005886 ... P95673 8736556
    27731 1lgh:H (2.4) BS02 BCL ? GO:0005886 ... P95673 8736556
    27732 1lgh:H (2.4) BS03 LYC ? GO:0005886 ... P95673 8736556
    27733 1lgh:H (2.4) BS04 BCL ? GO:0005886 ... P95673 8736556
    27734 1lgh:J (2.4) BS01 LYC ? GO:0005886 ... P97253 8736556
    27735 1lgh:J (2.4) BS02 BCL ? GO:0005886 ... P97253 8736556
    27736 1lgh:J (2.4) BS03 BCL ? GO:0005886 ... P97253 8736556
    27737 1lgh:J (2.4) BS04 LYC ? GO:0005886 ... P97253 8736556
    27738 1lgh:J (2.4) BS05 BCL ? GO:0005886 ... P97253 8736556
    27739 1lgh:K (2.4) BS01 BCL ? GO:0005886 ... P95673 8736556
    27740 1lgh:K (2.4) BS02 BCL ? GO:0005886 ... P95673 8736556
    27741 1lgh:K (2.4) BS03 LYC ? GO:0005886 ... P95673 8736556
    27742 1lgh:K (2.4) BS04 BCL ? GO:0005886 ... P95673 8736556
    27743 1lgn:A (2.8) BS01 CA ? GO:0001849 ... P02743 9217261
    27744 1lgn:A (2.8) BS02 CA ? GO:0001849 ... P02743 9217261
    27745 1lgn:A (2.8) BS03 DA ? GO:0001849 ... P02743 9217261
    27746 1lgn:B (2.8) BS01 CA ? GO:0001849 ... P02743 9217261
    27747 1lgn:B (2.8) BS02 CA ? GO:0001849 ... P02743 9217261
    27748 1lgn:B (2.8) BS03 DA ? GO:0001849 ... P02743 9217261
    27749 1lgn:C (2.8) BS01 CA ? GO:0001849 ... P02743 9217261
    27750 1lgn:C (2.8) BS02 CA ? GO:0001849 ... P02743 9217261
    27751 1lgn:C (2.8) BS03 DA ? GO:0001849 ... P02743 9217261
    27752 1lgn:D (2.8) BS01 CA ? GO:0001849 ... P02743 9217261
    27753 1lgn:D (2.8) BS02 CA ? GO:0001849 ... P02743 9217261
    27754 1lgn:D (2.8) BS03 DA ? GO:0001849 ... P02743 9217261
    27755 1lgn:E (2.8) BS01 CA ? GO:0001849 ... P02743 9217261
    27756 1lgn:E (2.8) BS02 CA ? GO:0001849 ... P02743 9217261
    27757 1lgn:E (2.8) BS03 DA ? GO:0001849 ... P02743 9217261
    27758 1lgr:A (2.79) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    27759 1lgr:A (2.79) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    27760 1lgr:A (2.79) BS03 AMP 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    27761 1lgr:B (2.79) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    27762 1lgr:B (2.79) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    27763 1lgr:B (2.79) BS03 AMP 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    27764 1lgr:C (2.79) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    27765 1lgr:C (2.79) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    27766 1lgr:C (2.79) BS03 AMP 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    27767 1lgr:D (2.79) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    27768 1lgr:D (2.79) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    27769 1lgr:D (2.79) BS03 AMP 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    27770 1lgr:E (2.79) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    27771 1lgr:E (2.79) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    27772 1lgr:E (2.79) BS03 AMP 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    27773 1lgr:F (2.79) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    27774 1lgr:F (2.79) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    27775 1lgr:F (2.79) BS03 AMP 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    27776 1lgr:G (2.79) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    27777 1lgr:G (2.79) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    27778 1lgr:G (2.79) BS03 AMP 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    27779 1lgr:H (2.79) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    27780 1lgr:H (2.79) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    27781 1lgr:H (2.79) BS03 AMP 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    27782 1lgr:I (2.79) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    27783 1lgr:I (2.79) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    27784 1lgr:I (2.79) BS03 AMP 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    27785 1lgr:J (2.79) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    27786 1lgr:J (2.79) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    27787 1lgr:J (2.79) BS03 AMP 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    27788 1lgr:K (2.79) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    27789 1lgr:K (2.79) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    27790 1lgr:K (2.79) BS03 AMP 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    27791 1lgr:L (2.79) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    27792 1lgr:L (2.79) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    27793 1lgr:L (2.79) BS03 AMP 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    27794 1lgt:A (1.7) BS01 FE2 1.13.11.39 GO:0003824 ... P47228 12415290
    27795 1lgt:A (1.7) BS02 FE2 1.13.11.39 GO:0003824 ... P47228 12415290
    27796 1lgt:A (1.7) BS03 BP3 1.13.11.39 GO:0003824 ... P47228 12415290 MOAD: Kd=0.8uM
    PDBbind: -logKd/Ki=6.10, Kd=0.8uM
    27797 1lgt:A (1.7) BS04 BP3 1.13.11.39 GO:0003824 ... P47228 12415290 MOAD: Kd=0.8uM
    PDBbind: -logKd/Ki=6.10, Kd=0.8uM
    27798 1lgw:A (1.85) BS01 1AN 3.2.1.17 GO:0003796 ... P00720 12217695 MOAD: Kd=100uM
    PDBbind: -logKd/Ki=4.00, Kd=100uM
    27799 1lgx:A (1.9) BS01 5AN 3.2.1.17 GO:0003796 ... P00720 12217695
    27800 1lh0:A (2.0) BS01 PRP 2.4.2.10 GO:0000287 ... P08870 22531064
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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