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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    26001 1kqo:E (2.5) BS01 DND 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    26002 1kqo:F (2.5) BS01 DND 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    26003 1kqp:A (1.03) BS01 MG 6.3.1.5 GO:0003952 ... P08164 12077433
    26004 1kqp:A (1.03) BS02 ADJ 6.3.1.5 GO:0003952 ... P08164 12077433
    26005 1kqp:A (1.03) BS03 POP 6.3.1.5 GO:0003952 ... P08164 12077433
    26006 1kqp:A (1.03) BS04 ADJ 6.3.1.5 GO:0003952 ... P08164 12077433
    26007 1kqp:B (1.03) BS01 ADJ 6.3.1.5 GO:0003952 ... P08164 12077433
    26008 1kqp:B (1.03) BS02 MG 6.3.1.5 GO:0003952 ... P08164 12077433
    26009 1kqp:B (1.03) BS03 ADJ 6.3.1.5 GO:0003952 ... P08164 12077433
    26010 1kqp:B (1.03) BS04 POP 6.3.1.5 GO:0003952 ... P08164 12077433
    26011 1kqq:A (-1.00) BS01 dna ? GO:0003677 ... Q24573 11867548 PDBbind: Kd=28nM
    26012 1kqq:A (-1.00) BS02 dna ? GO:0003677 ... Q24573 11867548 PDBbind: Kd=28nM
    26013 1kqr:A (1.4) BS01 MNA ? GO:0019028 ... P12473 11867517
    26014 1kqs:1 (3.1) BS01 rna ? GO:0003735 ... P22452 11828326
    26015 1kqs:2 (3.1) BS01 rna ? GO:0000049 ... P32411 11828326
    26016 1kqs:2 (3.1) BS02 MG ? GO:0000049 ... P32411 11828326
    26017 1kqs:A (3.1) BS01 rna ? GO:0002181 ... P20276 11828326
    26018 1kqs:B (3.1) BS01 rna ? GO:0003723 ... P20279 11828326
    26019 1kqs:C (3.1) BS01 rna ? GO:0003723 ... P12735 11828326
    26020 1kqs:D (3.1) BS01 rna ? GO:0000049 ... P14124 11828326
    26021 1kqs:D (3.1) BS02 rna ? GO:0000049 ... P14124 11828326
    26022 1kqs:E (3.1) BS01 rna ? GO:0002181 ... P14135 11828326
    26023 1kqs:F (3.1) BS01 rna ? GO:0001682 ... P12743 11828326
    26024 1kqs:H (3.1) BS01 rna ? GO:0000027 ... P60617 11828326
    26025 1kqs:I (3.1) BS01 rna ? GO:0003729 ... P29198 11828326
    26026 1kqs:J (3.1) BS01 rna ? GO:0003735 ... P22450 11828326
    26027 1kqs:K (3.1) BS01 rna ? GO:0003735 ... P12737 11828326
    26028 1kqs:L (3.1) BS01 rna ? GO:0002181 ... P60618 11828326
    26029 1kqs:M (3.1) BS01 rna ? GO:0000027 ... P14123 11828326
    26030 1kqs:M (3.1) BS02 rna ? GO:0000027 ... P14123 11828326
    26031 1kqs:N (3.1) BS01 rna ? GO:0003723 ... P12733 11828326
    26032 1kqs:O (3.1) BS01 rna ? GO:0003723 ... P14119 11828326
    26033 1kqs:P (3.1) BS01 rna ? GO:0003735 ... P12734 11828326
    26034 1kqs:P (3.1) BS02 rna ? GO:0003735 ... P12734 11828326
    26035 1kqs:Q (3.1) BS01 rna ? GO:0002181 ... P10970 11828326
    26036 1kqs:R (3.1) BS01 rna ? GO:0000027 ... P12732 11828326
    26037 1kqs:S (3.1) BS01 rna ? GO:0002181 ... P10972 11828326
    26038 1kqs:S (3.1) BS02 MG ? GO:0002181 ... P10972 11828326
    26039 1kqs:T (3.1) BS01 rna ? GO:0003735 ... P14116 11828326
    26040 1kqs:U (3.1) BS01 rna ? GO:0003735 ... P10971 11828326
    26041 1kqs:V (3.1) BS01 rna ? GO:0000463 ... P14121 11828326
    26042 1kqs:V (3.1) BS02 rna ? GO:0000463 ... P14121 11828326
    26043 1kqs:W (3.1) BS01 rna ? GO:0002181 ... P18138 11828326
    26044 1kqs:X (3.1) BS01 rna ? GO:0000166 ... P12736 11828326
    26045 1kqs:X (3.1) BS02 MG ? GO:0000166 ... P12736 11828326
    26046 1kqs:Y (3.1) BS01 rna ? GO:0003735 ... P60619 11828326
    26047 1kqs:Z (3.1) BS01 rna ? GO:0003723 ... P32410 11828326
    26048 1kqu:A (2.1) BS01 CA 3.1.1.4 GO:0004623 ... P14555 12616631
    26049 1kqu:A (2.1) BS02 CA 3.1.1.4 GO:0004623 ... P14555 12616631
    26050 1kqu:A (2.1) BS03 BR4 3.1.1.4 GO:0004623 ... P14555 12616631
    26051 1kqw:A (1.38) BS01 RTL ? GO:0005504 ... Q8UVG6 12162964
    26052 1kr2:A (2.3) BS01 TAD 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    26053 1kr2:B (2.3) BS01 TAD 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    26054 1kr2:C (2.3) BS01 TAD 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    26055 1kr2:D (2.3) BS01 TAD 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    26056 1kr2:E (2.3) BS01 TAD 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    26057 1kr2:F (2.3) BS01 TAD 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    26058 1kr3:A (2.5) BS01 ZN 3.5.2.6 GO:0008270 ... P25910 12019104
    26059 1kr3:A (2.5) BS02 ZN 3.5.2.6 GO:0008270 ... P25910 12019104
    26060 1kr3:A (2.5) BS03 113 3.5.2.6 GO:0008270 ... P25910 12019104 MOAD: Ki=10uM
    26061 1kr3:B (2.5) BS01 ZN 3.5.2.6 GO:0008270 ... P25910 12019104
    26062 1kr3:B (2.5) BS02 ZN 3.5.2.6 GO:0008270 ... P25910 12019104
    26063 1kr3:B (2.5) BS03 113 3.5.2.6 GO:0008270 ... P25910 12019104 MOAD: Ki=10uM
    26064 1kr5:A (2.1) BS01 SAH 2.1.1.77 GO:0004719 ... P22061 11792715
    26065 1kr6:A (1.8) BS01 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    26066 1kr6:A (1.8) BS02 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    26067 1kr6:A (1.8) BS03 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    26068 1kr6:A (1.8) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    26069 1kr6:A (1.8) BS05 ZN 3.4.24.27 GO:0004222 ... P00800 N/A
    26070 1kr6:A (1.8) BS06 DGL 3.4.24.27 GO:0004222 ... P00800 N/A
    26071 1kr7:A (1.5) BS01 HEM ? GO:0005344 ... O76242 12015154
    26072 1kr7:A (1.5) BS02 OXY ? GO:0005344 ... O76242 12015154
    26073 1krb:C (2.5) BS01 NI 3.5.1.5 GO:0005515 ... P18314 8718850
    26074 1krb:C (2.5) BS02 NI 3.5.1.5 GO:0005515 ... P18314 8718850
    26075 1krc:C (2.5) BS01 NI 3.5.1.5 GO:0005515 ... P18314 8718850
    26076 1krc:C (2.5) BS02 NI 3.5.1.5 GO:0005515 ... P18314 8718850
    26077 1kre:A (2.2) BS01 DMJ 3.2.1.113 GO:0004571 ... P31723 11714724
    26078 1kre:B (2.2) BS01 MAN 3.2.1.113 GO:0004571 ... P31723 11714724
    26079 1kre:B (2.2) BS02 DMJ 3.2.1.113 GO:0004571 ... P31723 11714724
    26080 1krf:A (2.2) BS01 MAN 3.2.1.113 GO:0004571 ... P31723 11714724
    26081 1krf:A (2.2) BS02 KIF 3.2.1.113 GO:0004571 ... P31723 11714724
    26082 1krf:B (2.2) BS01 MAN 3.2.1.113 GO:0004571 ... P31723 11714724
    26083 1krf:B (2.2) BS02 KIF 3.2.1.113 GO:0004571 ... P31723 11714724
    26084 1krh:A (1.5) BS01 FES 1.18.1.3 GO:0008860 ... P07771 12051836
    26085 1krh:A (1.5) BS02 FAD 1.18.1.3 GO:0008860 ... P07771 12051836
    26086 1krh:B (1.5) BS01 FES 1.18.1.3 GO:0008860 ... P07771 12051836
    26087 1krh:B (1.5) BS02 FAD 1.18.1.3 GO:0008860 ... P07771 12051836
    26088 1krj:A (2.0) BS01 K 1.11.1.5 GO:0004601 ... P00431 10608846
    26089 1krj:A (2.0) BS02 HEM 1.11.1.5 GO:0004601 ... P00431 10608846
    26090 1krm:A (2.5) BS01 ZN 3.5.4.4 GO:0004000 ... P56658 12554940
    26091 1krm:A (2.5) BS02 PRH 3.5.4.4 GO:0004000 ... P56658 12554940
    26092 1kro:A (1.7) BS01 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    26093 1kro:A (1.7) BS02 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    26094 1kro:A (1.7) BS03 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    26095 1kro:A (1.7) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    26096 1kro:A (1.7) BS05 ZN 3.4.24.27 GO:0004222 ... P00800 N/A
    26097 1kro:A (1.7) BS06 DTH 3.4.24.27 GO:0004222 ... P00800 N/A
    26098 1krp:A (2.2) BS01 dna 2.7.7.7 GO:0003676 ... P00582 9514742
    26099 1krp:A (2.2) BS02 ZN 2.7.7.7 GO:0003676 ... P00582 9514742
    26100 1krp:A (2.2) BS03 ZN 2.7.7.7 GO:0003676 ... P00582 9514742
    26101 1krr:A (2.5) BS01 ACO 2.3.1.18 GO:0005737 ... P07464 11937062
    26102 1krr:A (2.5) BS02 ACO 2.3.1.18 GO:0005737 ... P07464 11937062
    26103 1krr:B (2.5) BS01 ACO 2.3.1.18 GO:0005737 ... P07464 11937062
    26104 1krr:B (2.5) BS02 ACO 2.3.1.18 GO:0005737 ... P07464 11937062
    26105 1krr:C (2.5) BS01 ACO 2.3.1.18 GO:0005737 ... P07464 11937062
    26106 1krr:C (2.5) BS02 ACO 2.3.1.18 GO:0005737 ... P07464 11937062
    26107 1kru:A (2.8) BS01 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    26108 1kru:A (2.8) BS02 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    26109 1kru:A (2.8) BS03 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    26110 1kru:A (2.8) BS04 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    26111 1kru:A (2.8) BS05 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    26112 1kru:A (2.8) BS06 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    26113 1kru:B (2.8) BS01 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    26114 1kru:B (2.8) BS02 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    26115 1kru:B (2.8) BS03 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    26116 1kru:B (2.8) BS04 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    26117 1kru:B (2.8) BS05 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    26118 1kru:C (2.8) BS01 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    26119 1kru:C (2.8) BS02 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    26120 1kru:C (2.8) BS03 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    26121 1kru:C (2.8) BS04 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    26122 1kru:C (2.8) BS05 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    26123 1krv:A (2.8) BS01 147 2.3.1.18 GO:0005737 ... P07464 11937062
    26124 1krv:A (2.8) BS02 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    26125 1krv:A (2.8) BS03 147 2.3.1.18 GO:0005737 ... P07464 11937062
    26126 1krv:A (2.8) BS04 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    26127 1krv:B (2.8) BS01 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    26128 1krv:B (2.8) BS02 147 2.3.1.18 GO:0005737 ... P07464 11937062
    26129 1krv:B (2.8) BS03 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    26130 1krv:B (2.8) BS04 147 2.3.1.18 GO:0005737 ... P07464 11937062
    26131 1krv:C (2.8) BS01 147 2.3.1.18 GO:0005737 ... P07464 11937062
    26132 1krv:C (2.8) BS02 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    26133 1krv:C (2.8) BS03 147 2.3.1.18 GO:0005737 ... P07464 11937062
    26134 1krv:C (2.8) BS04 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    26135 1krx:A (-1.00) BS01 BEF ? GO:0000160 ... P41789 12885241
    26136 1ks4:A (2.5) BS01 PD 3.2.1.4 GO:0000272 ... O74705 11914491
    26137 1ks4:A (2.5) BS02 PD 3.2.1.4 GO:0000272 ... O74705 11914491
    26138 1ks4:A (2.5) BS03 PD 3.2.1.4 GO:0000272 ... O74705 11914491
    26139 1ks7:A (1.7) BS01 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    26140 1ks7:A (1.7) BS02 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    26141 1ks7:A (1.7) BS03 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    26142 1ks7:A (1.7) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    26143 1ks7:A (1.7) BS05 ZN 3.4.24.27 GO:0004222 ... P00800 N/A
    26144 1ks7:A (1.7) BS06 DAS 3.4.24.27 GO:0004222 ... P00800 N/A
    26145 1ksc:A (1.55) BS01 CA 3.2.1.4 GO:0004553 ... O77044 11914490
    26146 1ksd:A (1.6) BS01 CA 3.2.1.4 GO:0004553 ... O77044 11914490
    26147 1ksf:X (2.6) BS01 MG ? GO:0004176 ... P0ABH9 12205096
    26148 1ksf:X (2.6) BS02 ADP ? GO:0004176 ... P0ABH9 12205096
    26149 1ksf:X (2.6) BS03 ADP ? GO:0004176 ... P0ABH9 12205096
    26150 1ksg:A (2.3) BS01 MG ? GO:0003924 ... Q9D0J4 11980706
    26151 1ksg:A (2.3) BS02 GTP ? GO:0003924 ... Q9D0J4 11980706
    26152 1ksh:A (1.8) BS01 MG ? GO:0003924 ... Q9D0J4 11980706
    26153 1ksh:A (1.8) BS02 GDP ? GO:0003924 ... Q9D0J4 11980706
    26154 1ksi:A (2.2) BS01 CU 1.4.3.21 GO:0005507 ... Q43077 8805580
    26155 1ksi:A (2.2) BS02 MN 1.4.3.21 GO:0005507 ... Q43077 8805580
    26156 1ksi:B (2.2) BS01 CU 1.4.3.21 GO:0005507 ... Q43077 8805580
    26157 1ksi:B (2.2) BS02 MN 1.4.3.21 GO:0005507 ... Q43077 8805580
    26158 1ksj:A (2.6) BS01 MG ? GO:0003924 ... Q9D0J4 11980706
    26159 1ksj:A (2.6) BS02 GDP ? GO:0003924 ... Q9D0J4 11980706
    26160 1ksj:A (2.6) BS03 GTP ? GO:0003924 ... Q9D0J4 11980706
    26161 1ksk:A (2.0) BS01 URA 5.4.99.19 GO:0000455 ... P0AA43 11953756
    26162 1ksl:A (2.1) BS01 URA 5.4.99.19 GO:0000455 ... P0AA43 11953756
    26163 1ksn:A (2.1) BS01 CA 3.4.21.6 GO:0004252 ... P00742 12039587
    26164 1ksn:A (2.1) BS02 FXV 3.4.21.6 GO:0004252 ... P00742 12039587 MOAD: Ki=0.4nM
    PDBbind: -logKd/Ki=9.40, Ki=0.4nM
    26165 1ksp:A (2.3) BS01 dna 2.7.7.7 GO:0003676 ... P00582 9514742
    26166 1ksp:A (2.3) BS02 ZN 2.7.7.7 GO:0003676 ... P00582 9514742
    26167 1ksp:A (2.3) BS03 ZN 2.7.7.7 GO:0003676 ... P00582 9514742
    26168 1kss:A (1.8) BS01 NA 1.3.2.4 GO:0008202 ... P0C278 12093271
    26169 1kss:A (1.8) BS02 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    26170 1kss:A (1.8) BS03 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    26171 1kss:A (1.8) BS04 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    26172 1kss:A (1.8) BS05 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    26173 1kss:A (1.8) BS06 FAD 1.3.2.4 GO:0008202 ... P0C278 12093271
    26174 1kss:A (1.8) BS07 FUM 1.3.2.4 GO:0008202 ... P0C278 12093271
    26175 1ksu:A (2.0) BS01 NA 1.3.2.4 GO:0008202 ... P0C278 12093271
    26176 1ksu:A (2.0) BS02 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    26177 1ksu:A (2.0) BS03 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    26178 1ksu:A (2.0) BS04 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    26179 1ksu:A (2.0) BS05 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    26180 1ksu:A (2.0) BS06 FAD 1.3.2.4 GO:0008202 ... P0C278 12093271
    26181 1ksu:A (2.0) BS07 FUM 1.3.2.4 GO:0008202 ... P0C278 12093271
    26182 1ksu:B (2.0) BS01 NA 1.3.2.4 GO:0008202 ... P0C278 12093271
    26183 1ksu:B (2.0) BS02 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    26184 1ksu:B (2.0) BS03 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    26185 1ksu:B (2.0) BS04 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    26186 1ksu:B (2.0) BS05 HEM 1.3.2.4 GO:0008202 ... P0C278 12093271
    26187 1ksu:B (2.0) BS06 FAD 1.3.2.4 GO:0008202 ... P0C278 12093271
    26188 1ksu:B (2.0) BS07 FUM 1.3.2.4 GO:0008202 ... P0C278 12093271
    26189 1ksv:A (2.65) BS01 U 5.4.99.19 GO:0000455 ... P0AA43 11953756
    26190 1ksw:A (2.8) BS01 NBS 2.7.10.2 GO:0004672 ... P12931 11841936
    26191 1ksx:A (3.2) BS01 dna 3.6.4.12 GO:0003677 ... P03116 11889054
    26192 1ksx:B (3.2) BS01 dna 3.6.4.12 GO:0003677 ... P03116 11889054
    26193 1ksx:B (3.2) BS02 dna 3.6.4.12 GO:0003677 ... P03116 11889054
    26194 1ksx:E (3.2) BS01 dna 3.6.4.12 GO:0003677 ... P03116 11889054
    26195 1ksx:E (3.2) BS02 dna 3.6.4.12 GO:0003677 ... P03116 11889054
    26196 1ksx:F (3.2) BS01 dna 3.6.4.12 GO:0003677 ... P03116 11889054
    26197 1ksx:F (3.2) BS02 dna 3.6.4.12 GO:0003677 ... P03116 11889054
    26198 1ksx:I (3.2) BS01 dna 3.6.4.12 GO:0003677 ... P03116 11889054
    26199 1ksx:I (3.2) BS02 dna 3.6.4.12 GO:0003677 ... P03116 11889054
    26200 1ksx:I (3.2) BS03 dna 3.6.4.12 GO:0003677 ... P03116 11889054
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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