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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2201 1azm:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00915 7932756
    2202 1azm:A (2.0) BS02 AZM 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00915 7932756 PDBbind: -logKd/Ki=6.10, Ki=0.8uM
    BindingDB: Ki=250nM, Kd=1400nM, IC50=5.8nM
    2203 1azn:A (2.6) BS01 CU ? GO:0005507 ... P00282 15299318
    2204 1azn:B (2.6) BS01 CU ? GO:0005507 ... P00282 15299318
    2205 1azn:C (2.6) BS01 CU ? GO:0005507 ... P00282 15299318
    2206 1azn:D (2.6) BS01 CU ? GO:0005507 ... P00282 15299318
    2207 1azp:A (1.6) BS01 dna ? GO:0003677 ... P13123 9515968
    2208 1azp:A (1.6) BS02 dna ? GO:0003677 ... P13123 9515968
    2209 1azq:A (1.94) BS01 dna ? GO:0003677 ... P13123 9515968
    2210 1azq:A (1.94) BS02 dna ? GO:0003677 ... P13123 9515968
    2211 1azr:A (2.4) BS01 CU ? GO:0005507 ... P00282 15299504
    2212 1azr:B (2.4) BS01 CU ? GO:0005507 ... P00282 15299504
    2213 1azr:C (2.4) BS01 CU ? GO:0005507 ... P00282 15299504
    2214 1azr:D (2.4) BS01 CU ? GO:0005507 ... P00282 15299504
    2215 1azs:A (2.3) BS01 FKP 4.6.1.1 GO:0009190 ... P30803 9417641
    2216 1azs:C (2.3) BS01 MG ? GO:0003924 ... P04896 9417641
    2217 1azs:C (2.3) BS02 GSP ? GO:0003924 ... P04896 9417641
    2218 1azt:A (2.3) BS01 MG ? GO:0003924 ... P04896 9395396
    2219 1azt:A (2.3) BS02 GSP ? GO:0003924 ... P04896 9395396
    2220 1azt:B (2.3) BS01 MG ? GO:0003924 ... P04896 9395396
    2221 1azt:B (2.3) BS02 GSP ? GO:0003924 ... P04896 9395396
    2222 1azu:A (2.7) BS01 CU ? GO:0005507 ... P00282 N/A
    2223 1azv:A (1.9) BS01 CU 1.15.1.1 GO:0000302 ... P00441 9541385
    2224 1azv:A (1.9) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 9541385
    2225 1azv:B (1.9) BS01 CU 1.15.1.1 GO:0000302 ... P00441 9541385
    2226 1azv:B (1.9) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 9541385
    2227 1azx:I (2.9) BS01 Z9L ? GO:0002020 ... P01008 9405673
    2228 1azx:I (2.9) BS02 GU6 ? GO:0002020 ... P01008 9405673
    2229 1azx:I (2.9) BS03 GU1 ? GO:0002020 ... P01008 9405673
    2230 1azx:I (2.9) BS04 Z9H ? GO:0002020 ... P01008 9405673
    2231 1azx:L (2.9) BS01 Z9L ? GO:0002020 ... P01008 9405673
    2232 1azx:L (2.9) BS02 Z9K ? GO:0002020 ... P01008 9405673
    2233 1azx:L (2.9) BS03 GU6 ? GO:0002020 ... P01008 9405673
    2234 1azx:L (2.9) BS04 GU1 ? GO:0002020 ... P01008 9405673
    2235 1azx:L (2.9) BS05 Z9H ? GO:0002020 ... P01008 9405673
    2236 1b01:A (2.56) BS01 dna ? GO:0003677 ... P13920 9857196
    2237 1b01:A (2.56) BS02 dna ? GO:0003677 ... P13920 9857196
    2238 1b01:B (2.56) BS01 dna ? GO:0003677 ... P13920 9857196
    2239 1b01:B (2.56) BS02 dna ? GO:0003677 ... P13920 9857196
    2240 1b02:A (2.5) BS01 UFP 2.1.1.45 GO:0004799 ... P0CI79 10091656
    2241 1b02:A (2.5) BS02 C2F 2.1.1.45 GO:0004799 ... P0CI79 10091656
    2242 1b05:A (2.0) BS01 peptide ? GO:0015031 ... P06202 10438628
    2243 1b06:A (2.2) BS01 FE 1.15.1.1 GO:0004784 ... Q08713 9878438
    2244 1b06:B (2.2) BS01 FE 1.15.1.1 GO:0004784 ... Q08713 9878438
    2245 1b06:C (2.2) BS01 FE 1.15.1.1 GO:0004784 ... Q08713 9878438
    2246 1b06:D (2.2) BS01 FE 1.15.1.1 GO:0004784 ... Q08713 9878438
    2247 1b06:E (2.2) BS01 FE 1.15.1.1 GO:0004784 ... Q08713 9878438
    2248 1b06:F (2.2) BS01 FE 1.15.1.1 GO:0004784 ... Q08713 9878438
    2249 1b09:A (2.5) BS01 CA ? GO:0001849 ... P02741 10368284
    2250 1b09:A (2.5) BS02 CA ? GO:0001849 ... P02741 10368284
    2251 1b09:A (2.5) BS03 PC ? GO:0001849 ... P02741 10368284
    2252 1b09:B (2.5) BS01 CA ? GO:0001849 ... P02741 10368284
    2253 1b09:B (2.5) BS02 CA ? GO:0001849 ... P02741 10368284
    2254 1b09:B (2.5) BS03 PC ? GO:0001849 ... P02741 10368284
    2255 1b09:C (2.5) BS01 CA ? GO:0001849 ... P02741 10368284
    2256 1b09:C (2.5) BS02 CA ? GO:0001849 ... P02741 10368284
    2257 1b09:C (2.5) BS03 PC ? GO:0001849 ... P02741 10368284
    2258 1b09:D (2.5) BS01 CA ? GO:0001849 ... P02741 10368284
    2259 1b09:D (2.5) BS02 CA ? GO:0001849 ... P02741 10368284
    2260 1b09:D (2.5) BS03 PC ? GO:0001849 ... P02741 10368284
    2261 1b09:E (2.5) BS01 CA ? GO:0001849 ... P02741 10368284
    2262 1b09:E (2.5) BS02 CA ? GO:0001849 ... P02741 10368284
    2263 1b09:E (2.5) BS03 PC ? GO:0001849 ... P02741 10368284
    2264 1b0b:A (1.43) BS01 CYN ? GO:0005576 ... P41260 10423453
    2265 1b0b:A (1.43) BS02 HEM ? GO:0005576 ... P41260 10423453
    2266 1b0d:A (1.84) BS01 TSU 3.2.1.17 GO:0003796 ... P00698 11418760
    2267 1b0e:A (1.8) BS01 CA 3.4.21.36 GO:0004252 ... P00772 9651152
    2268 1b0e:A (1.8) BS02 SEI 3.4.21.36 GO:0004252 ... P00772 9651152
    2269 1b0f:A (3.0) BS01 FUC 3.4.21.37 GO:0000122 ... P08246 9651152
    2270 1b0f:A (3.0) BS02 SEI 3.4.21.37 GO:0000122 ... P08246 9651152 PDBbind: -logKd/Ki=7.70, Ki=20nM
    BindingDB: Ki=25nM
    2271 1b0h:A (1.9) BS01 peptide ? GO:0015031 ... P06202 10422831
    2272 1b0i:A (2.4) BS01 CA 3.2.1.1 GO:0003824 ... P29957 9862804
    2273 1b0j:A (2.5) BS01 SF4 4.2.1.3 GO:0003994 ... P16276 10631981
    2274 1b0k:A (2.5) BS01 FLC 4.2.1.3 GO:0003994 ... P16276 10631981
    2275 1b0k:A (2.5) BS02 SF4 4.2.1.3 GO:0003994 ... P16276 10631981
    2276 1b0k:A (2.5) BS03 O 4.2.1.3 GO:0003994 ... P16276 10631981
    2277 1b0l:A (2.2) BS01 FE 3.4.21.- GO:0001503 ... P02788 10089347
    2278 1b0l:A (2.2) BS02 FE 3.4.21.- GO:0001503 ... P02788 10089347
    2279 1b0l:A (2.2) BS03 CO3 3.4.21.- GO:0001503 ... P02788 10089347
    2280 1b0l:A (2.2) BS04 CO3 3.4.21.- GO:0001503 ... P02788 10089347
    2281 1b0m:A (2.5) BS01 FLC 4.2.1.3 GO:0003994 ... P16276 10631981
    2282 1b0m:A (2.5) BS02 SF4 4.2.1.3 GO:0003994 ... P16276 10631981
    2283 1b0n:A (1.9) BS01 ZN ? GO:0003677 ... P06533 9799632
    2284 1b0n:A (1.9) BS02 ZN ? GO:0003677 ... P06533 9799632
    2285 1b0n:A (1.9) BS03 ZN ? GO:0003677 ... P06533 9799632
    2286 1b0n:B (1.9) BS01 ZN ? GO:0006355 ... P23308 9799632
    2287 1b0o:A (2.5) BS01 PLM ? GO:0005515 ... P02754 9867826
    2288 1b0p:A (2.31) BS01 MG 1.2.7.1 GO:0003824 ... P94692 10048931
    2289 1b0p:A (2.31) BS02 CA 1.2.7.1 GO:0003824 ... P94692 10048931
    2290 1b0p:A (2.31) BS03 SF4 1.2.7.1 GO:0003824 ... P94692 10048931
    2291 1b0p:A (2.31) BS04 SF4 1.2.7.1 GO:0003824 ... P94692 10048931
    2292 1b0p:A (2.31) BS05 SF4 1.2.7.1 GO:0003824 ... P94692 10048931
    2293 1b0p:A (2.31) BS06 TPP 1.2.7.1 GO:0003824 ... P94692 10048931
    2294 1b0p:B (2.31) BS01 MG 1.2.7.1 GO:0003824 ... P94692 10048931
    2295 1b0p:B (2.31) BS02 CA 1.2.7.1 GO:0003824 ... P94692 10048931
    2296 1b0p:B (2.31) BS03 SF4 1.2.7.1 GO:0003824 ... P94692 10048931
    2297 1b0p:B (2.31) BS04 SF4 1.2.7.1 GO:0003824 ... P94692 10048931
    2298 1b0p:B (2.31) BS05 SF4 1.2.7.1 GO:0003824 ... P94692 10048931
    2299 1b0p:B (2.31) BS06 TPP 1.2.7.1 GO:0003824 ... P94692 10048931
    2300 1b0t:A (2.1) BS01 SF4 ? GO:0003677 ... P00214 N/A
    2301 1b0t:A (2.1) BS02 F3S ? GO:0003677 ... P00214 N/A
    2302 1b0u:A (1.5) BS01 ATP 7.4.2.1 GO:0003333 ... P02915 9872322
    2303 1b0v:A (2.8) BS01 SF4 ? GO:0003677 ... P00214 10593945
    2304 1b0v:A (2.8) BS02 F3S ? GO:0003677 ... P00214 10593945
    2305 1b0v:B (2.8) BS01 SF4 ? GO:0003677 ... P00214 10593945
    2306 1b0v:B (2.8) BS02 F3S ? GO:0003677 ... P00214 10593945
    2307 1b0v:C (2.8) BS01 SF4 ? GO:0003677 ... P00214 10593945
    2308 1b0v:C (2.8) BS02 F3S ? GO:0003677 ... P00214 10593945
    2309 1b0v:D (2.8) BS01 SF4 ? GO:0003677 ... P00214 10593945
    2310 1b0v:D (2.8) BS02 F3S ? GO:0003677 ... P00214 10593945
    2311 1b0y:A (0.93) BS01 SF4 ? GO:0009055 ... P00260 10531472
    2312 1b11:A (1.9) BS01 3TL 2.7.7.-
    2.7.7.49
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.-
    3.6.1.23    		 GO:0004190 ... P16088 10651036 MOAD: Ki=41nM
    PDBbind: -logKd/Ki=7.39, Ki=41nM
    2313 1b12:A (1.95) BS01 1PN 3.4.21.89 GO:0004252 ... P00803 9823901
    2314 1b12:B (1.95) BS01 1PN 3.4.21.89 GO:0004252 ... P00803 9823901
    2315 1b12:C (1.95) BS01 1PN 3.4.21.89 GO:0004252 ... P00803 9823901
    2316 1b12:D (1.95) BS01 1PN 3.4.21.89 GO:0004252 ... P00803 9823901
    2317 1b13:A (1.5) BS01 FE ? GO:0005506 ... P00268 10216292
    2318 1b14:A (2.4) BS01 NAD 1.1.1.1 GO:0004022 ... P10807 10366509
    2319 1b14:B (2.4) BS01 NAD 1.1.1.1 GO:0004022 ... P10807 10366509
    2320 1b15:A (2.2) BS01 NAE 1.1.1.1 GO:0004022 ... P10807 10366509
    2321 1b15:B (2.2) BS01 NAE 1.1.1.1 GO:0004022 ... P10807 10366509
    2322 1b16:A (1.4) BS01 NAQ 1.1.1.1 GO:0004022 ... P10807 10366509
    2323 1b16:B (1.4) BS01 NAQ 1.1.1.1 GO:0004022 ... P10807 10366509
    2324 1b17:B (1.7) BS01 peptide ? GO:0005179 ... P01315 12657786
    2325 1b18:B (1.8) BS01 peptide ? GO:0005179 ... P01315 12657786
    2326 1b19:B (1.8) BS01 peptide ? GO:0005179 ... P01315 12657786
    2327 1b1b:A (2.6) BS01 ZN ? GO:0003677 ... P9WMH1 9887269
    2328 1b1b:A (2.6) BS02 ZN ? GO:0003677 ... P9WMH1 9887269
    2329 1b1c:A (1.93) BS01 FMN 1.6.2.4 GO:0010181 ... P16435 10048323
    2330 1b1g:A (-1.00) BS01 CA ? GO:0005499 ... P02633 9390401
    2331 1b1g:A (-1.00) BS02 CA ? GO:0005499 ... P02633 9390401
    2332 1b1h:A (1.8) BS01 peptide ? GO:0015031 ... P06202 10422831
    2333 1b1x:A (2.62) BS01 FE 3.4.21.- GO:0001503 ... O77811 10366507
    2334 1b1x:A (2.62) BS02 FE 3.4.21.- GO:0001503 ... O77811 10366507
    2335 1b1x:A (2.62) BS03 CO3 3.4.21.- GO:0001503 ... O77811 10366507
    2336 1b1x:A (2.62) BS04 CO3 3.4.21.- GO:0001503 ... O77811 10366507
    2337 1b1y:A (2.5) BS01 BGC 3.2.1.2 GO:0000272 ... P16098 9918723
    2338 1b1y:A (2.5) BS02 GLC 3.2.1.2 GO:0000272 ... P16098 9918723
    2339 1b23:P (2.6) BS01 rna ? GO:0003746 ... Q01698 10368282
    2340 1b23:P (2.6) BS02 CYS ? GO:0003746 ... Q01698 10368282
    2341 1b23:P (2.6) BS03 MG ? GO:0003746 ... Q01698 10368282
    2342 1b23:P (2.6) BS04 GNP ? GO:0003746 ... Q01698 10368282
    2343 1b25:A (1.85) BS01 SF4 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    2344 1b25:A (1.85) BS02 PTT 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    2345 1b25:B (1.85) BS01 SF4 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    2346 1b25:B (1.85) BS02 PTT 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    2347 1b25:C (1.85) BS01 SF4 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    2348 1b25:C (1.85) BS02 PTT 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    2349 1b25:D (1.85) BS01 SF4 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    2350 1b25:D (1.85) BS02 PTT 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    2351 1b2a:B (1.7) BS01 peptide ? GO:0005179 ... P01315 12657786
    2352 1b2b:B (1.8) BS01 peptide ? GO:0005179 ... P01315 12657786
    2353 1b2c:B (1.8) BS01 peptide ? GO:0005179 ... P01315 12657786
    2354 1b2d:B (1.7) BS01 peptide ? GO:0005179 ... P01315 12657786
    2355 1b2e:B (1.9) BS01 peptide ? GO:0005179 ... P01315 12657786
    2356 1b2f:B (1.9) BS01 peptide ? GO:0005179 ... P01315 12657786
    2357 1b2g:B (1.8) BS01 peptide ? GO:0005179 ... P01315 12657786
    2358 1b2h:A (1.9) BS01 peptide ? GO:0015031 ... P06202 10422831
    2359 1b2j:A (1.6) BS01 FE ? GO:0005506 ... P00268 10216292
    2360 1b2l:A (1.6) BS01 CA 1.1.1.1 GO:0004022 ... P10807 10366509
    2361 1b2l:A (1.6) BS02 NDC 1.1.1.1 GO:0004022 ... P10807 10366509
    2362 1b2l:A (1.6) BS03 CYH 1.1.1.1 GO:0004022 ... P10807 10366509
    2363 1b2m:A (2.0) BS01 rna 4.6.1.24 GO:0001411 ... P00651 10029539
    2364 1b2m:B (2.0) BS01 rna 4.6.1.24 GO:0001411 ... P00651 10029539
    2365 1b2m:B (2.0) BS02 rna 4.6.1.24 GO:0001411 ... P00651 10029539
    2366 1b2o:A (1.9) BS01 FE ? GO:0005506 ... P00268 10216292
    2367 1b2o:B (1.9) BS01 FE ? GO:0005506 ... P00268 10216292
    2368 1b2r:A (1.8) BS01 FAD 1.18.1.2 GO:0016491 ... P21890 10651039
    2369 1b2v:A (1.9) BS01 HEM ? GO:0005515 ... Q54450 10360351
    2370 1b2y:A (3.2) BS01 BGC 3.2.1.1 GO:0003824 ... P04746 10657258
    2371 1b2y:A (3.2) BS02 AC1 3.2.1.1 GO:0003824 ... P04746 10657258
    2372 1b2y:A (3.2) BS03 GLC 3.2.1.1 GO:0003824 ... P04746 10657258
    2373 1b2y:A (3.2) BS04 G6D 3.2.1.1 GO:0003824 ... P04746 10657258
    2374 1b2y:A (3.2) BS05 CA 3.2.1.1 GO:0003824 ... P04746 10657258
    2375 1b2z:C (2.03) BS01 ZN 3.1.27.- GO:0003723 ... P00648 11914482
    2376 1b30:A (2.25) BS01 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    2377 1b30:A (2.25) BS02 XYP 3.2.1.8 GO:0004553 ... P56588 10029534
    2378 1b32:A (1.75) BS01 peptide ? GO:0015031 ... P06202 10438628
    2379 1b33:A (2.3) BS01 BLA ? GO:0009579 ... P00315 9990029
    2380 1b33:B (2.3) BS01 BLA ? GO:0009579 ... P00318 9990029
    2381 1b33:F (2.3) BS01 BLA ? GO:0009579 ... P00318 9990029
    2382 1b33:N (2.3) BS01 BLA ? GO:0009579 ... P20116 9990029
    2383 1b37:A (1.9) BS01 FAD 1.5.3.14
    1.5.3.15    		 GO:0006598 ... O64411 10368296
    2384 1b37:B (1.9) BS01 FAD 1.5.3.14
    1.5.3.15    		 GO:0006598 ... O64411 10368296
    2385 1b37:C (1.9) BS01 FAD 1.5.3.14
    1.5.3.15    		 GO:0006598 ... O64411 10368296
    2386 1b38:A (2.0) BS01 MG 2.7.11.22 GO:0000082 ... P24941 10085115
    2387 1b38:A (2.0) BS02 ATP 2.7.11.22 GO:0000082 ... P24941 10085115 MOAD: Kd=0.254uM
    PDBbind: -logKd/Ki=6.60, Kd=0.254uM
    2388 1b39:A (2.1) BS01 MG 2.7.11.22 GO:0000082 ... P24941 10085115
    2389 1b39:A (2.1) BS02 ATP 2.7.11.22 GO:0000082 ... P24941 10085115 MOAD: Kd=0.12uM
    PDBbind: -logKd/Ki=6.92, Kd=0.120uM
    2390 1b3a:A (1.6) BS01 AOP ? GO:0002407 ... P13501 9889151
    2391 1b3a:B (1.6) BS01 AOP ? GO:0002407 ... P13501 9889151
    2392 1b3d:A (2.3) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10543949
    2393 1b3d:A (2.3) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10543949
    2394 1b3d:A (2.3) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    2395 1b3d:A (2.3) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    2396 1b3d:A (2.3) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    2397 1b3d:B (2.3) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10543949
    2398 1b3d:B (2.3) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10543949
    2399 1b3d:B (2.3) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    2400 1b3d:B (2.3) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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