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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    23401 1jtd:B (2.3) BS02 CA ? GO:0005737 ... O87916 11573088
    23402 1jte:A (2.0) BS01 SAH 2.1.1.57 GO:0003723 ... P07617 12056899
    23403 1jtf:A (2.6) BS01 SAH 2.1.1.57 GO:0003723 ... P07617 12056899
    23404 1jtf:A (2.6) BS02 M7G 2.1.1.57 GO:0003723 ... P07617 12056899
    23405 1jtg:B (1.73) BS01 CA ? GO:0005515 ... P35804 11573088
    23406 1jtg:D (1.73) BS01 CA ? GO:0005515 ... P35804 11573088
    23407 1jtk:A (2.04) BS01 ZN 3.5.4.5 GO:0003824 ... P19079 11851403
    23408 1jtk:A (2.04) BS02 THU 3.5.4.5 GO:0003824 ... P19079 11851403
    23409 1jtk:B (2.04) BS01 ZN 3.5.4.5 GO:0003824 ... P19079 11851403
    23410 1jtk:B (2.04) BS02 THU 3.5.4.5 GO:0003824 ... P19079 11851403
    23411 1jtq:A (2.5) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 11697906
    23412 1jtq:A (2.5) BS02 LY3 2.1.1.45 GO:0000287 ... P0A884 11697906 PDBbind: -logKd/Ki=8.07, Ki=8.5nM
    23413 1jtq:A (2.5) BS03 UMP 2.1.1.45 GO:0000287 ... P0A884 11697906
    23414 1jtq:B (2.5) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 11697906
    23415 1jtq:B (2.5) BS02 UMP 2.1.1.45 GO:0000287 ... P0A884 11697906
    23416 1jtq:B (2.5) BS03 LY3 2.1.1.45 GO:0000287 ... P0A884 11697906 PDBbind: -logKd/Ki=8.07, Ki=8.5nM
    23417 1jtu:A (2.2) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 11697906
    23418 1jtu:A (2.2) BS02 LYB 2.1.1.45 GO:0000287 ... P0A884 11697906
    23419 1jtu:A (2.2) BS03 UMP 2.1.1.45 GO:0000287 ... P0A884 11697906
    23420 1jtu:B (2.2) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 11697906
    23421 1jtu:B (2.2) BS02 UMP 2.1.1.45 GO:0000287 ... P0A884 11697906
    23422 1jtu:B (2.2) BS03 LYB 2.1.1.45 GO:0000287 ... P0A884 11697906
    23423 1jtv:A (1.54) BS01 TES 1.1.1.51
    1.1.1.62
    GO:0003824 ... P14061 12490543
    23424 1jtx:A (2.85) BS01 CVI ? GO:0003677 ... P0A0N4 11739955
    23425 1jty:A (2.97) BS01 ET ? GO:0003677 ... P0A0N4 11739955
    23426 1ju2:A (1.47) BS01 FAD 4.1.2.10 GO:0016614 ... Q945K2 11566130
    23427 1ju2:B (1.47) BS01 FAD 4.1.2.10 GO:0016614 ... Q945K2 11566130
    23428 1ju3:A (1.58) BS01 PBC 3.1.1.84 GO:0005737 ... Q9L9D7 11742345
    23429 1ju6:A (2.89) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 11697906
    23430 1ju6:A (2.89) BS02 LYA 2.1.1.45 GO:0000900 ... P04818 11697906 BindingDB: IC50=9500nM, Ki=1.3nM
    23431 1ju6:A (2.89) BS03 UMP 2.1.1.45 GO:0000900 ... P04818 11697906
    23432 1ju6:B (2.89) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 11697906
    23433 1ju6:B (2.89) BS02 UMP 2.1.1.45 GO:0000900 ... P04818 11697906
    23434 1ju6:B (2.89) BS03 LYA 2.1.1.45 GO:0000900 ... P04818 11697906 BindingDB: IC50=9500nM, Ki=1.3nM
    23435 1ju6:C (2.89) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 11697906
    23436 1ju6:C (2.89) BS02 LYA 2.1.1.45 GO:0000900 ... P04818 11697906 BindingDB: IC50=9500nM, Ki=1.3nM
    23437 1ju6:C (2.89) BS03 UMP 2.1.1.45 GO:0000900 ... P04818 11697906
    23438 1ju6:D (2.89) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 11697906
    23439 1ju6:D (2.89) BS02 UMP 2.1.1.45 GO:0000900 ... P04818 11697906
    23440 1ju6:D (2.89) BS03 LYA 2.1.1.45 GO:0000900 ... P04818 11697906 BindingDB: IC50=9500nM, Ki=1.3nM
    23441 1ju9:A (2.0) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 11601993
    23442 1ju9:A (2.0) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 11601993
    23443 1ju9:A (2.0) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 11601993 MOAD: Ki=1640uM
    23444 1ju9:B (2.0) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 11601993
    23445 1ju9:B (2.0) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 11601993
    23446 1ju9:B (2.0) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 11601993 MOAD: Ki=1640uM
    23447 1jub:A (1.4) BS01 MG 1.3.98.1 GO:0004152 ... A2RJT9 12732650
    23448 1jub:A (1.4) BS02 FMN 1.3.98.1 GO:0004152 ... A2RJT9 12732650
    23449 1jub:B (1.4) BS01 MG 1.3.98.1 GO:0004152 ... A2RJT9 12732650
    23450 1jub:B (1.4) BS02 FMN 1.3.98.1 GO:0004152 ... A2RJT9 12732650
    23451 1jue:A (1.8) BS01 MG 1.3.98.1 GO:0004152 ... A2RJT9 12732650
    23452 1jue:A (1.8) BS02 FMN 1.3.98.1 GO:0004152 ... A2RJT9 12732650
    23453 1jue:B (1.8) BS01 MG 1.3.98.1 GO:0004152 ... A2RJT9 12732650
    23454 1jue:B (1.8) BS02 FMN 1.3.98.1 GO:0004152 ... A2RJT9 12732650
    23455 1jug:A (1.9) BS01 CA 3.2.1.17 GO:0003796 ... P37156 15299900
    23456 1juh:A (1.6) BS01 CU 1.13.11.24 GO:0008127 ... Q7SIC2 11839311
    23457 1juh:B (1.6) BS01 CU 1.13.11.24 GO:0008127 ... Q7SIC2 11839311
    23458 1juh:C (1.6) BS01 CU 1.13.11.24 GO:0008127 ... Q7SIC2 11839311
    23459 1juh:D (1.6) BS01 CU 1.13.11.24 GO:0008127 ... Q7SIC2 11839311
    23460 1jui:A (2.75) BS01 peptide ? GO:0005537 ... P55915 11371463
    23461 1jui:A (2.75) BS02 MN ? GO:0005537 ... P55915 11371463
    23462 1jui:A (2.75) BS03 CA ? GO:0005537 ... P55915 11371463
    23463 1jui:B (2.75) BS01 peptide ? GO:0005537 ... P55915 11371463
    23464 1jui:B (2.75) BS02 MN ? GO:0005537 ... P55915 11371463
    23465 1jui:B (2.75) BS03 CA ? GO:0005537 ... P55915 11371463
    23466 1jui:C (2.75) BS01 peptide ? GO:0005537 ... P55915 11371463
    23467 1jui:C (2.75) BS02 MN ? GO:0005537 ... P55915 11371463
    23468 1jui:C (2.75) BS03 CA ? GO:0005537 ... P55915 11371463
    23469 1jui:D (2.75) BS01 peptide ? GO:0005537 ... P55915 11371463
    23470 1jui:D (2.75) BS02 MN ? GO:0005537 ... P55915 11371463
    23471 1jui:D (2.75) BS03 CA ? GO:0005537 ... P55915 11371463
    23472 1juj:A (3.0) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 11697906
    23473 1juj:A (3.0) BS02 LYA 2.1.1.45 GO:0000900 ... P04818 11697906 PDBbind: -logKd/Ki=6.96, Ki=109nM
    BindingDB: IC50=9500nM, Ki=1.3nM
    23474 1juj:A (3.0) BS03 UMP 2.1.1.45 GO:0000900 ... P04818 11697906
    23475 1juj:B (3.0) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 11697906
    23476 1juj:B (3.0) BS02 UMP 2.1.1.45 GO:0000900 ... P04818 11697906
    23477 1juj:B (3.0) BS03 LYA 2.1.1.45 GO:0000900 ... P04818 11697906 PDBbind: -logKd/Ki=6.96, Ki=109nM
    BindingDB: IC50=9500nM, Ki=1.3nM
    23478 1juj:C (3.0) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 11697906
    23479 1juj:C (3.0) BS02 LYA 2.1.1.45 GO:0000900 ... P04818 11697906 BindingDB: IC50=9500nM, Ki=1.3nM
    23480 1juj:C (3.0) BS03 UMP 2.1.1.45 GO:0000900 ... P04818 11697906
    23481 1juj:D (3.0) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 11697906
    23482 1juj:D (3.0) BS02 UMP 2.1.1.45 GO:0000900 ... P04818 11697906
    23483 1juj:D (3.0) BS03 LYA 2.1.1.45 GO:0000900 ... P04818 11697906 BindingDB: IC50=9500nM, Ki=1.3nM
    23484 1juk:A (2.5) BS01 SO4 4.1.1.48 GO:0000162 ... Q06121 8893859
    23485 1jum:A (2.98) BS01 BER ? GO:0003677 ... P0A0N4 11739955
    23486 1jup:A (2.95) BS01 MGR ? GO:0003677 ... P0A0N4 11739955
    23487 1juq:A (2.2) BS01 peptide ? GO:0005802 ... Q9NZ52 11859375
    23488 1juq:B (2.2) BS01 peptide ? GO:0005802 ... Q9NZ52 11859375
    23489 1juq:C (2.2) BS01 peptide ? GO:0005802 ... Q9NZ52 11859375
    23490 1juq:D (2.2) BS01 peptide ? GO:0005802 ... Q9NZ52 11859375
    23491 1jus:A (2.84) BS01 RHQ ? GO:0003677 ... P0A0N4 11739955
    23492 1jut:A (2.7) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 11697906
    23493 1jut:A (2.7) BS02 LYD 2.1.1.45 GO:0000287 ... P0A884 11697906 PDBbind: -logKd/Ki=7.32, Ki=47.7nM
    23494 1jut:A (2.7) BS03 UMP 2.1.1.45 GO:0000287 ... P0A884 11697906
    23495 1jut:B (2.7) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 11697906
    23496 1jut:B (2.7) BS02 UMP 2.1.1.45 GO:0000287 ... P0A884 11697906
    23497 1jut:B (2.7) BS03 LYD 2.1.1.45 GO:0000287 ... P0A884 11697906 PDBbind: -logKd/Ki=7.32, Ki=47.7nM
    23498 1juv:A (1.7) BS01 NDP 1.5.1.3 GO:0004146 ... P04382 N/A
    23499 1juy:A (2.5) BS01 MG 6.3.4.4 GO:0000166 ... P0A7D4 8961938
    23500 1juy:A (2.5) BS02 GDP 6.3.4.4 GO:0000166 ... P0A7D4 8961938
    23501 1juy:A (2.5) BS03 H5P 6.3.4.4 GO:0000166 ... P0A7D4 8961938 PDBbind: -logKd/Ki=7.66, Ki=22nM
    23502 1juy:A (2.5) BS04 HDA 6.3.4.4 GO:0000166 ... P0A7D4 8961938
    23503 1jv0:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 12009884
    23504 1jv0:A (2.0) BS02 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 12009884
    23505 1jv0:B (2.0) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 12009884
    23506 1jv0:B (2.0) BS02 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 12009884
    23507 1jv1:A (1.9) BS01 UD1 2.7.4.-
    2.7.7.23
    2.7.7.83
    GO:0003977 ... Q16222 11707391
    23508 1jv1:B (1.9) BS01 UD1 2.7.4.-
    2.7.7.23
    2.7.7.83
    GO:0003977 ... Q16222 11707391
    23509 1jv2:A (3.1) BS01 CA ? GO:0001525 ... P06756 11546839
    23510 1jv2:A (3.1) BS02 CA ? GO:0001525 ... P06756 11546839
    23511 1jv2:A (3.1) BS03 CA ? GO:0001525 ... P06756 11546839
    23512 1jv2:A (3.1) BS04 CA ? GO:0001525 ... P06756 11546839
    23513 1jv2:A (3.1) BS05 CA ? GO:0001525 ... P06756 11546839
    23514 1jv2:B (3.1) BS01 CA ? GO:0001618 ... P05106 11546839
    23515 1jv3:A (2.2) BS01 UD2 2.7.4.-
    2.7.7.23
    2.7.7.83
    GO:0003977 ... Q16222 11707391
    23516 1jv3:B (2.2) BS01 UD2 2.7.4.-
    2.7.7.23
    2.7.7.83
    GO:0003977 ... Q16222 11707391
    23517 1jv4:A (1.75) BS01 TZL ? GO:0003674 ... P11589 11717500
    23518 1jv6:A (2.0) BS01 RET ? GO:0005886 ... P02945 11676543
    23519 1jv7:A (2.25) BS01 RET ? GO:0005216 ... P02945 11676543
    23520 1jvb:A (1.85) BS01 ZN 1.1.1.1 GO:0004022 ... P39462 12051852
    23521 1jvb:A (1.85) BS02 ZN 1.1.1.1 GO:0004022 ... P39462 12051852
    23522 1jvd:A (2.4) BS01 UD1 2.7.4.-
    2.7.7.23
    2.7.7.83
    GO:0003977 ... Q16222 11707391
    23523 1jvd:B (2.4) BS01 UD1 2.7.4.-
    2.7.7.23
    2.7.7.83
    GO:0003977 ... Q16222 11707391
    23524 1jvg:A (2.3) BS01 UD2 2.7.4.-
    2.7.7.23
    2.7.7.83
    GO:0003977 ... Q16222 11707391
    23525 1jvg:B (2.3) BS01 UD2 2.7.4.-
    2.7.7.23
    2.7.7.83
    GO:0003977 ... Q16222 11707391
    23526 1jvi:A (2.2) BS01 ZN 4.4.1.21 GO:0005506 ... O34667 11601850
    23527 1jvi:A (2.2) BS02 RHC 4.4.1.21 GO:0005506 ... O34667 11601850
    23528 1jvj:A (1.73) BS01 IM2 3.5.2.6 GO:0005515 ... P62593 11870868
    23529 1jvl:A (2.0) BS01 CU ? GO:0005507 ... P00282 11740504
    23530 1jvl:B (2.0) BS01 CU ? GO:0005507 ... P00282 11740504
    23531 1jvn:B (2.1) BS01 POP 3.5.1.2
    4.3.2.10
    GO:0000105 ... P33734 11591353
    23532 1jvo:A (2.75) BS01 CU ? GO:0005507 ... P00282 11740504
    23533 1jvo:B (2.75) BS01 CU ? GO:0005507 ... P00282 11740504
    23534 1jvo:C (2.75) BS01 CU ? GO:0005507 ... P00282 11740504
    23535 1jvo:D (2.75) BS01 CU ? GO:0005507 ... P00282 11740504
    23536 1jvo:E (2.75) BS01 CU ? GO:0005507 ... P00282 11740504
    23537 1jvo:F (2.75) BS01 CU ? GO:0005507 ... P00282 11740504
    23538 1jvo:G (2.75) BS01 CU ? GO:0005507 ... P00282 11740504
    23539 1jvo:H (2.75) BS01 CU ? GO:0005507 ... P00282 11740504
    23540 1jvo:I (2.75) BS01 CU ? GO:0005507 ... P00282 11740504
    23541 1jvo:J (2.75) BS01 CU ? GO:0005507 ... P00282 11740504
    23542 1jvo:K (2.75) BS01 CU ? GO:0005507 ... P00282 11740504
    23543 1jvo:L (2.75) BS01 CU ? GO:0005507 ... P00282 11740504
    23544 1jvp:P (1.53) BS01 89E 2.7.11.22 GO:0000082 ... P24941 11755359
    23545 1jvq:I (2.6) BS01 peptide ? GO:0002020 ... P01008 15342247
    23546 1jvq:I (2.6) BS02 peptide ? GO:0002020 ... P01008 15342247
    23547 1jvs:A (2.2) BS01 SO4 1.1.1.267 GO:0008299 ... P45568 11872159
    23548 1jvs:A (2.2) BS02 NDP 1.1.1.267 GO:0008299 ... P45568 11872159
    23549 1jvs:B (2.2) BS01 SO4 1.1.1.267 GO:0008299 ... P45568 11872159
    23550 1jvs:B (2.2) BS02 NDP 1.1.1.267 GO:0008299 ... P45568 11872159
    23551 1jvu:A (1.78) BS01 C2P 4.6.1.18 GO:0003676 ... P61823 11746706 PDBbind: -logKd/Ki=5.15, Ki=7uM
    BindingDB: Ki=7000nM
    23552 1jvx:A (2.5) BS01 GLC ? GO:0008643 ... P0AEX9 12538909
    23553 1jvx:A (2.5) BS02 GLC ? GO:0008643 ... P0AEX9 12538909
    23554 1jvy:A (1.9) BS01 GLC ? GO:0008643 ... P0AEX9 12538909
    23555 1jvy:A (1.9) BS02 GLC ? GO:0008643 ... P0AEX9 12538909
    23556 1jvz:A (2.6) BS01 CEN 3.5.1.93 GO:0016787 ... Q9L5D6 11755403
    23557 1jvz:B (2.6) BS01 CEN 3.5.1.93 GO:0016787 ... Q9L5D6 11755403
    23558 1jw0:B (2.5) BS01 GUA 3.5.1.93 GO:0016787 ... Q9L5D6 11755403
    23559 1jw1:A (4.0) BS01 FE 3.4.21.- GO:0001503 ... Q29477 N/A
    23560 1jw1:A (4.0) BS02 FE 3.4.21.- GO:0001503 ... Q29477 N/A
    23561 1jw5:A (2.0) BS01 GLC ? GO:0005515 ... P0AEX9 11790091
    23562 1jw5:A (2.0) BS02 GLC ? GO:0005515 ... P0AEX9 11790091
    23563 1jw6:A (1.93) BS01 peptide ? GO:0030246 ... P02866 11732694
    23564 1jw6:A (1.93) BS02 MN ? GO:0030246 ... P02866 11732694
    23565 1jw6:A (1.93) BS03 CA ? GO:0030246 ... P02866 11732694
    23566 1jw8:A (1.3) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 17680690
    23567 1jw9:B (1.7) BS01 ZN 2.7.7.80 GO:0004792 ... P12282 11713534
    23568 1jwa:B (2.9) BS01 ATP 2.7.7.80 GO:0004792 ... P12282 11713534
    23569 1jwb:B (2.1) BS01 ZN 2.7.7.80 GO:0004792 ... P12282 11713534
    23570 1jwb:B (2.1) BS02 AMP 2.7.7.80 GO:0004792 ... P12282 11713534
    23571 1jwg:A (2.0) BS01 peptide ? GO:0005802 ... Q9UJY5 11859376
    23572 1jwg:B (2.0) BS01 peptide ? GO:0005802 ... Q9UJY5 11859376
    23573 1jwh:A (3.1) BS01 ANP 2.7.11.1 GO:0004672 ... P68400 11574463
    23574 1jwh:C (3.1) BS01 ZN ? GO:0000785 ... P67870 11574463
    23575 1jwh:D (3.1) BS01 ZN ? GO:0000785 ... P67870 11574463
    23576 1jwj:A (2.6) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 11669619
    23577 1jwj:A (2.6) BS02 H4B 1.14.13.39 GO:0004517 ... P29477 11669619
    23578 1jwj:B (2.6) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 11669619
    23579 1jwj:B (2.6) BS02 H4B 1.14.13.39 GO:0004517 ... P29477 11669619
    23580 1jwk:A (2.3) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 11669619
    23581 1jwk:A (2.3) BS02 HBI 1.14.13.39 GO:0004517 ... P29477 11669619
    23582 1jwk:B (2.3) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 11669619
    23583 1jwk:B (2.3) BS02 HBI 1.14.13.39 GO:0004517 ... P29477 11669619
    23584 1jwl:A (4.0) BS01 dna ? GO:0000976 ... P03023 11580238
    23585 1jwl:A (4.0) BS02 NPF ? GO:0000976 ... P03023 11580238
    23586 1jwl:B (4.0) BS01 dna ? GO:0000976 ... P03023 11580238
    23587 1jwl:B (4.0) BS02 dna ? GO:0000976 ... P03023 11580238
    23588 1jwl:B (4.0) BS03 NPF ? GO:0000976 ... P03023 11580238
    23589 1jwl:C (4.0) BS01 NPF ? GO:0000976 ... P03023 11580238
    23590 1jwm:A (2.7) BS01 peptide ? GO:0006955 ... P01903 12962633
    23591 1jwm:B (2.7) BS01 peptide ? GO:0006955 ... P01911 12962633
    23592 1jwn:A (2.1) BS01 HEM ? GO:0001666 ... P02213 11732898
    23593 1jwn:A (2.1) BS02 HEM ? GO:0001666 ... P02213 11732898
    23594 1jwn:B (2.1) BS01 HEM ? GO:0001666 ... P02213 11732898
    23595 1jwn:B (2.1) BS02 HEM ? GO:0001666 ... P02213 11732898
    23596 1jwn:C (2.1) BS01 HEM ? GO:0001666 ... P02213 11732898
    23597 1jwn:C (2.1) BS02 HEM ? GO:0001666 ... P02213 11732898
    23598 1jwn:D (2.1) BS01 HEM ? GO:0001666 ... P02213 11732898
    23599 1jwn:D (2.1) BS02 HEM ? GO:0001666 ... P02213 11732898
    23600 1jwq:A (1.8) BS01 ZN 3.5.1.28 GO:0008745 ... Q9LCR3 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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