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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    21201 1izl:C (3.7) BS10 CLA ? GO:0005737 ... Q8DIF8 12518057
    21202 1izl:C (3.7) BS11 CLA ? GO:0005737 ... Q8DIF8 12518057
    21203 1izl:D (3.7) BS01 PHO 1.10.3.9 GO:0005506 ... Q8CM25 12518057
    21204 1izl:D (3.7) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 12518057
    21205 1izl:D (3.7) BS03 PHO 1.10.3.9 GO:0005506 ... Q8CM25 12518057
    21206 1izl:D (3.7) BS04 PLA 1.10.3.9 GO:0005506 ... Q8CM25 12518057
    21207 1izl:E (3.7) BS01 peptide ? GO:0005506 ... Q8DIP0 12518057
    21208 1izl:J (3.7) BS01 MN 1.10.3.9 GO:0005506 ... P51765 12518057
    21209 1izl:J (3.7) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 12518057
    21210 1izl:J (3.7) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 12518057
    21211 1izl:L (3.7) BS01 CLA ? GO:0009521 ... Q8DIQ1 12518057
    21212 1izl:L (3.7) BS02 CLA ? GO:0009521 ... Q8DIQ1 12518057
    21213 1izl:L (3.7) BS03 CLA ? GO:0009521 ... Q8DIQ1 12518057
    21214 1izl:L (3.7) BS04 CLA ? GO:0009521 ... Q8DIQ1 12518057
    21215 1izl:L (3.7) BS05 CLA ? GO:0009521 ... Q8DIQ1 12518057
    21216 1izl:L (3.7) BS06 CLA ? GO:0009521 ... Q8DIQ1 12518057
    21217 1izl:L (3.7) BS07 CLA ? GO:0009521 ... Q8DIQ1 12518057
    21218 1izl:L (3.7) BS08 CLA ? GO:0009521 ... Q8DIQ1 12518057
    21219 1izl:L (3.7) BS09 CLA ? GO:0009521 ... Q8DIQ1 12518057
    21220 1izl:L (3.7) BS10 CLA ? GO:0009521 ... Q8DIQ1 12518057
    21221 1izl:M (3.7) BS01 peptide ? GO:0005737 ... Q8DIF8 12518057
    21222 1izl:M (3.7) BS02 CLA ? GO:0005737 ... Q8DIF8 12518057
    21223 1izl:M (3.7) BS03 CLA ? GO:0005737 ... Q8DIF8 12518057
    21224 1izl:M (3.7) BS04 CLA ? GO:0005737 ... Q8DIF8 12518057
    21225 1izl:M (3.7) BS05 CLA ? GO:0005737 ... Q8DIF8 12518057
    21226 1izl:M (3.7) BS06 CLA ? GO:0005737 ... Q8DIF8 12518057
    21227 1izl:M (3.7) BS07 CLA ? GO:0005737 ... Q8DIF8 12518057
    21228 1izl:M (3.7) BS08 CLA ? GO:0005737 ... Q8DIF8 12518057
    21229 1izl:M (3.7) BS09 CLA ? GO:0005737 ... Q8DIF8 12518057
    21230 1izl:M (3.7) BS10 CLA ? GO:0005737 ... Q8DIF8 12518057
    21231 1izl:N (3.7) BS01 peptide 1.10.3.9 GO:0005506 ... Q8CM25 12518057
    21232 1izl:N (3.7) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 12518057
    21233 1izl:N (3.7) BS03 CLA 1.10.3.9 GO:0005506 ... Q8CM25 12518057
    21234 1izl:N (3.7) BS04 PHO 1.10.3.9 GO:0005506 ... Q8CM25 12518057
    21235 1izl:N (3.7) BS05 PLA 1.10.3.9 GO:0005506 ... Q8CM25 12518057
    21236 1izl:V (3.7) BS01 HEM ? GO:0005506 ... P0A387 12518057
    21237 1izo:A (2.1) BS01 HEM 1.11.2.4 GO:0004497 ... O31440 12519760
    21238 1izo:B (2.1) BS01 HEM 1.11.2.4 GO:0004497 ... O31440 12519760
    21239 1izo:C (2.1) BS01 HEM 1.11.2.4 GO:0004497 ... O31440 12519760
    21240 1j01:A (2.0) BS01 XIL 3.2.1.8
    3.2.1.91
    GO:0004553 ... P07986 N/A MOAD: Ki=0.34uM
    PDBbind: -logKd/Ki=6.47, Ki=0.34uM
    21241 1j02:A (1.7) BS01 HEM 1.14.14.18 GO:0001525 ... P06762 12924938
    21242 1j02:A (1.7) BS02 NO 1.14.14.18 GO:0001525 ... P06762 12924938
    21243 1j04:A (2.6) BS01 AOA 2.6.1.44
    2.6.1.51
    GO:0004760 ... P21549 20208150
    21244 1j06:A (2.35) BS01 CO3 3.1.1.7 GO:0001919 ... P21836 12505979
    21245 1j06:B (2.35) BS01 CO3 3.1.1.7 GO:0001919 ... P21836 12505979
    21246 1j07:A (2.35) BS01 CO3 3.1.1.7 GO:0001919 ... P21836 12505979
    21247 1j07:A (2.35) BS02 DCU 3.1.1.7 GO:0001919 ... P21836 12505979 MOAD: Ki=0.021uM
    PDBbind: -logKd/Ki=7.68, Ki=0.021uM
    21248 1j07:B (2.35) BS01 CO3 3.1.1.7 GO:0001919 ... P21836 12505979
    21249 1j07:B (2.35) BS02 DCU 3.1.1.7 GO:0001919 ... P21836 12505979 MOAD: Ki=0.021uM
    21250 1j09:A (1.8) BS01 GLU 6.1.1.17 GO:0000049 ... P27000 12554668
    21251 1j09:A (1.8) BS02 ATP 6.1.1.17 GO:0000049 ... P27000 12554668
    21252 1j0a:A (2.5) BS01 PLP 3.5.99.7 GO:0003824 ... O57809 15328614
    21253 1j0a:B (2.5) BS01 PLP 3.5.99.7 GO:0003824 ... O57809 15328614
    21254 1j0a:C (2.5) BS01 PLP 3.5.99.7 GO:0003824 ... O57809 15328614
    21255 1j0b:A (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    21256 1j0b:B (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    21257 1j0b:C (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    21258 1j0b:D (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    21259 1j0b:E (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    21260 1j0b:F (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    21261 1j0b:G (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    21262 1j0b:H (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    21263 1j0b:I (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    21264 1j0b:J (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    21265 1j0b:K (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    21266 1j0b:L (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    21267 1j0b:M (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    21268 1j0b:N (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    21269 1j0b:O (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    21270 1j0b:P (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    21271 1j0b:Q (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    21272 1j0b:R (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    21273 1j0b:S (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    21274 1j0b:T (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    21275 1j0b:U (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    21276 1j0b:V (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    21277 1j0b:W (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    21278 1j0b:X (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    21279 1j0c:A (2.75) BS01 PLP 3.5.99.7 GO:0008660 ... Q7M523 12882962
    21280 1j0c:B (2.75) BS01 PLP 3.5.99.7 GO:0008660 ... Q7M523 12882962
    21281 1j0c:C (2.75) BS01 PLP 3.5.99.7 GO:0008660 ... Q7M523 12882962
    21282 1j0c:D (2.75) BS01 PLP 3.5.99.7 GO:0008660 ... Q7M523 12882962
    21283 1j0d:A (2.2) BS01 5PA 3.5.99.7 GO:0008660 ... Q7M523 12882962
    21284 1j0d:B (2.2) BS01 5PA 3.5.99.7 GO:0008660 ... Q7M523 12882962
    21285 1j0d:C (2.2) BS01 5PA 3.5.99.7 GO:0008660 ... Q7M523 12882962
    21286 1j0d:D (2.2) BS01 5PA 3.5.99.7 GO:0008660 ... Q7M523 12882962
    21287 1j0e:A (2.45) BS01 PLP 3.5.99.7 GO:0008660 ... Q7M523 12882962
    21288 1j0e:A (2.45) BS02 1AC 3.5.99.7 GO:0008660 ... Q7M523 12882962
    21289 1j0e:B (2.45) BS01 PLP 3.5.99.7 GO:0008660 ... Q7M523 12882962
    21290 1j0e:B (2.45) BS02 1AC 3.5.99.7 GO:0008660 ... Q7M523 12882962
    21291 1j0e:C (2.45) BS01 PLP 3.5.99.7 GO:0008660 ... Q7M523 12882962
    21292 1j0e:C (2.45) BS02 1AC 3.5.99.7 GO:0008660 ... Q7M523 12882962
    21293 1j0e:D (2.45) BS01 PLP 3.5.99.7 GO:0008660 ... Q7M523 12882962
    21294 1j0e:D (2.45) BS02 1AC 3.5.99.7 GO:0008660 ... Q7M523 12882962
    21295 1j0h:A (1.9) BS01 CA 3.2.1.135 GO:0004553 ... P38940 12547200
    21296 1j0h:B (1.9) BS01 CA 3.2.1.135 GO:0004553 ... P38940 12547200
    21297 1j0i:A (2.4) BS01 GLC 3.2.1.135 GO:0004553 ... P38940 12547200
    21298 1j0i:A (2.4) BS02 GLC 3.2.1.135 GO:0004553 ... P38940 12547200
    21299 1j0i:B (2.4) BS01 GLC 3.2.1.135 GO:0004553 ... P38940 12547200
    21300 1j0i:B (2.4) BS02 GLC 3.2.1.135 GO:0004553 ... P38940 12547200
    21301 1j0i:B (2.4) BS03 GLC 3.2.1.135 GO:0004553 ... P38940 12547200
    21302 1j0j:A (2.8) BS01 GLC 3.2.1.135 GO:0004553 ... P38940 12547200
    21303 1j0j:A (2.8) BS02 GLC 3.2.1.135 GO:0004553 ... P38940 12547200
    21304 1j0j:A (2.8) BS03 GLC 3.2.1.135 GO:0004553 ... P38940 12547200
    21305 1j0j:A (2.8) BS04 GLC 3.2.1.135 GO:0004553 ... P38940 12547200
    21306 1j0j:B (2.8) BS01 GLC 3.2.1.135 GO:0004553 ... P38940 12547200
    21307 1j0j:B (2.8) BS02 GLC 3.2.1.135 GO:0004553 ... P38940 12547200
    21308 1j0j:B (2.8) BS03 GLC 3.2.1.135 GO:0004553 ... P38940 12547200
    21309 1j0j:B (2.8) BS04 GLC 3.2.1.135 GO:0004553 ... P38940 12547200
    21310 1j0k:A (3.2) BS01 GLC 3.2.1.135 GO:0004553 ... P38940 12547200
    21311 1j0k:A (3.2) BS02 GLC 3.2.1.135 GO:0004553 ... P38940 12547200
    21312 1j0k:A (3.2) BS03 GLC 3.2.1.135 GO:0004553 ... P38940 12547200
    21313 1j0k:B (3.2) BS01 GLC 3.2.1.135 GO:0004553 ... P38940 12547200
    21314 1j0k:B (3.2) BS02 GLC 3.2.1.135 GO:0004553 ... P38940 12547200
    21315 1j0m:A (2.3) BS01 CA 4.2.2.12 GO:0003824 ... Q9AQS0 12475987
    21316 1j0n:A (2.4) BS01 CEG 4.2.2.12 GO:0003824 ... Q9AQS0 12475987
    21317 1j0n:A (2.4) BS02 CA 4.2.2.12 GO:0003824 ... Q9AQS0 12475987
    21318 1j0o:A (1.15) BS01 HEM ? GO:0009055 ... P00132 14581238
    21319 1j0o:A (1.15) BS02 HEM ? GO:0009055 ... P00132 14581238
    21320 1j0o:A (1.15) BS03 HEM ? GO:0009055 ... P00132 14581238
    21321 1j0o:A (1.15) BS04 HEM ? GO:0009055 ... P00132 14581238
    21322 1j0p:A (0.91) BS01 HEM ? GO:0009055 ... P00132 14581238
    21323 1j0p:A (0.91) BS02 HEM ? GO:0009055 ... P00132 14581238
    21324 1j0p:A (0.91) BS03 HEM ? GO:0009055 ... P00132 14581238
    21325 1j0p:A (0.91) BS04 HEM ? GO:0009055 ... P00132 14581238
    21326 1j0q:A (-1.00) BS01 HEM ? GO:0020037 ... P00171 12893266
    21327 1j0x:P (2.4) BS01 NAD 1.2.1.12
    2.6.99.-
    GO:0000226 ... P46406 14646080 MOAD: Kd=0.01uM
    21328 1j0x:R (2.4) BS01 NAD 1.2.1.12
    2.6.99.-
    GO:0000226 ... P46406 14646080 MOAD: Kd=0.01uM
    21329 1j0y:A (2.1) BS01 BGC 3.2.1.2 GO:0000272 ... P36924 12761294
    21330 1j0y:A (2.1) BS02 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    21331 1j0y:B (2.1) BS01 BGC 3.2.1.2 GO:0000272 ... P36924 12761294
    21332 1j0y:B (2.1) BS02 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    21333 1j0y:C (2.1) BS01 BGC 3.2.1.2 GO:0000272 ... P36924 12761294
    21334 1j0y:C (2.1) BS02 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    21335 1j0y:D (2.1) BS01 BGC 3.2.1.2 GO:0000272 ... P36924 12761294
    21336 1j0y:D (2.1) BS02 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    21337 1j0z:A (2.2) BS01 BGC 3.2.1.2 GO:0000272 ... P36924 12761294
    21338 1j0z:A (2.2) BS02 GLC 3.2.1.2 GO:0000272 ... P36924 12761294
    21339 1j0z:A (2.2) BS03 BGC 3.2.1.2 GO:0000272 ... P36924 12761294
    21340 1j0z:A (2.2) BS04 GLC 3.2.1.2 GO:0000272 ... P36924 12761294
    21341 1j0z:A (2.2) BS05 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    21342 1j0z:B (2.2) BS01 BGC 3.2.1.2 GO:0000272 ... P36924 12761294
    21343 1j0z:B (2.2) BS02 GLC 3.2.1.2 GO:0000272 ... P36924 12761294
    21344 1j0z:B (2.2) BS03 BGC 3.2.1.2 GO:0000272 ... P36924 12761294
    21345 1j0z:B (2.2) BS04 GLC 3.2.1.2 GO:0000272 ... P36924 12761294
    21346 1j0z:B (2.2) BS05 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    21347 1j0z:C (2.2) BS01 GLC 3.2.1.2 GO:0000272 ... P36924 12761294
    21348 1j0z:C (2.2) BS02 GLC 3.2.1.2 GO:0000272 ... P36924 12761294
    21349 1j0z:C (2.2) BS03 BGC 3.2.1.2 GO:0000272 ... P36924 12761294
    21350 1j0z:C (2.2) BS04 GLC 3.2.1.2 GO:0000272 ... P36924 12761294
    21351 1j0z:C (2.2) BS05 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    21352 1j0z:D (2.2) BS01 GLC 3.2.1.2 GO:0000272 ... P36924 12761294
    21353 1j0z:D (2.2) BS02 GLC 3.2.1.2 GO:0000272 ... P36924 12761294
    21354 1j0z:D (2.2) BS03 BGC 3.2.1.2 GO:0000272 ... P36924 12761294
    21355 1j0z:D (2.2) BS04 GLC 3.2.1.2 GO:0000272 ... P36924 12761294
    21356 1j0z:D (2.2) BS05 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    21357 1j10:A (2.1) BS01 GLC 3.2.1.2 GO:0000272 ... P36924 12761294
    21358 1j10:A (2.1) BS02 GLC 3.2.1.2 GO:0000272 ... P36924 12761294
    21359 1j10:A (2.1) BS03 GLC 3.2.1.2 GO:0000272 ... P36924 12761294
    21360 1j10:A (2.1) BS04 GLC 3.2.1.2 GO:0000272 ... P36924 12761294
    21361 1j10:A (2.1) BS05 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    21362 1j10:B (2.1) BS01 GLC 3.2.1.2 GO:0000272 ... P36924 12761294
    21363 1j10:B (2.1) BS02 GLC 3.2.1.2 GO:0000272 ... P36924 12761294
    21364 1j10:B (2.1) BS03 XYP 3.2.1.2 GO:0000272 ... P36924 12761294
    21365 1j10:B (2.1) BS04 GLC 3.2.1.2 GO:0000272 ... P36924 12761294
    21366 1j10:B (2.1) BS05 GLC 3.2.1.2 GO:0000272 ... P36924 12761294
    21367 1j10:B (2.1) BS06 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    21368 1j10:C (2.1) BS01 GLC 3.2.1.2 GO:0000272 ... P36924 12761294
    21369 1j10:C (2.1) BS02 GLC 3.2.1.2 GO:0000272 ... P36924 12761294
    21370 1j10:C (2.1) BS03 GLC 3.2.1.2 GO:0000272 ... P36924 12761294
    21371 1j10:C (2.1) BS04 GLC 3.2.1.2 GO:0000272 ... P36924 12761294
    21372 1j10:C (2.1) BS05 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    21373 1j10:D (2.1) BS01 GLC 3.2.1.2 GO:0000272 ... P36924 12761294
    21374 1j10:D (2.1) BS02 GLC 3.2.1.2 GO:0000272 ... P36924 12761294
    21375 1j10:D (2.1) BS03 XYP 3.2.1.2 GO:0000272 ... P36924 12761294
    21376 1j10:D (2.1) BS04 GLC 3.2.1.2 GO:0000272 ... P36924 12761294
    21377 1j10:D (2.1) BS05 GLC 3.2.1.2 GO:0000272 ... P36924 12761294
    21378 1j10:D (2.1) BS06 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    21379 1j11:A (2.0) BS01 EPG 3.2.1.2 GO:0000272 ... P36924 12761294
    21380 1j11:A (2.0) BS02 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    21381 1j11:B (2.0) BS01 EPG 3.2.1.2 GO:0000272 ... P36924 12761294
    21382 1j11:B (2.0) BS02 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    21383 1j11:C (2.0) BS01 EPG 3.2.1.2 GO:0000272 ... P36924 12761294
    21384 1j11:C (2.0) BS02 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    21385 1j11:D (2.0) BS01 EPG 3.2.1.2 GO:0000272 ... P36924 12761294
    21386 1j11:D (2.0) BS02 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    21387 1j12:A (2.1) BS01 EBG 3.2.1.2 GO:0000272 ... P36924 12761294
    21388 1j12:A (2.1) BS02 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    21389 1j12:B (2.1) BS01 EBG 3.2.1.2 GO:0000272 ... P36924 12761294
    21390 1j12:B (2.1) BS02 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    21391 1j12:C (2.1) BS01 EBG 3.2.1.2 GO:0000272 ... P36924 12761294
    21392 1j12:C (2.1) BS02 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    21393 1j12:D (2.1) BS01 EBG 3.2.1.2 GO:0000272 ... P36924 12761294
    21394 1j12:D (2.1) BS02 CA 3.2.1.2 GO:0000272 ... P36924 12761294
    21395 1j14:A (2.4) BS01 CA 3.4.21.4 GO:0004252 ... P00763 12527302
    21396 1j14:A (2.4) BS02 BEN 3.4.21.4 GO:0004252 ... P00763 12527302 MOAD: Ki=32.2uM
    PDBbind: -logKd/Ki=4.49, Ki=32.2uM
    21397 1j15:A (2.0) BS01 CA 3.4.21.4 GO:0004252 ... P00763 12527302
    21398 1j15:A (2.0) BS02 BEN 3.4.21.4 GO:0004252 ... P00763 12527302 MOAD: Ki=143uM
    PDBbind: -logKd/Ki=3.84, Ki=143uM
    21399 1j16:A (1.6) BS01 CA 3.4.21.4 GO:0004252 ... P00763 12527302
    21400 1j16:A (1.6) BS02 BEN 3.4.21.4 GO:0004252 ... P00763 12527302 MOAD: Ki=143uM
    PDBbind: -logKd/Ki=3.84, Ki=143uM

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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