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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    16401 1gwm:A (1.15) BS04 CO ? N/A Q9C171 12391332
    16402 1gwn:A (2.1) BS01 GTP ? GO:0003924 ... P61588 12009891
    16403 1gwn:A (2.1) BS02 MG ? GO:0003924 ... P61588 12009891
    16404 1gwn:C (2.1) BS01 GTP ? GO:0003924 ... P61588 12009891
    16405 1gwn:C (2.1) BS02 MG ? GO:0003924 ... P61588 12009891
    16406 1gwo:A (2.07) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 N/A
    16407 1gwo:A (2.07) BS02 CA 1.11.1.7 GO:0004601 ... P00433 N/A
    16408 1gwo:A (2.07) BS03 CA 1.11.1.7 GO:0004601 ... P00433 N/A
    16409 1gwq:A (2.45) BS01 peptide ? N/A P03372 11937504
    16410 1gwq:A (2.45) BS02 ZTW ? N/A P03372 11937504 BindingDB: EC50=1400nM, IC50=1410nM, Ki=4.1nM
    16411 1gwq:B (2.45) BS01 peptide ? N/A P03372 11937504
    16412 1gwq:B (2.45) BS02 ZTW ? N/A P03372 11937504 BindingDB: EC50=1400nM, IC50=1410nM, Ki=4.1nM
    16413 1gwr:A (2.4) BS01 peptide ? N/A P03372 11937504
    16414 1gwr:A (2.4) BS02 EST ? N/A P03372 11937504 BindingDB: IC50=1.3nM, Kd=0.2nM, EC50=0.75nM, Ki=0.21nM
    16415 1gwr:B (2.4) BS01 peptide ? N/A P03372 11937504
    16416 1gwr:B (2.4) BS02 EST ? N/A P03372 11937504 BindingDB: IC50=1.3nM, Kd=0.2nM, EC50=0.75nM, Ki=0.21nM
    16417 1gws:A (2.4) BS01 HEC ? GO:0009055 ... P24092 12467575
    16418 1gws:A (2.4) BS02 HEC ? GO:0009055 ... P24092 12467575
    16419 1gws:A (2.4) BS03 HEC ? GO:0009055 ... P24092 12467575
    16420 1gws:A (2.4) BS04 HEC ? GO:0009055 ... P24092 12467575
    16421 1gws:A (2.4) BS05 HEC ? GO:0009055 ... P24092 12467575
    16422 1gws:A (2.4) BS06 HEC ? GO:0009055 ... P24092 12467575
    16423 1gws:A (2.4) BS07 HEC ? GO:0009055 ... P24092 12467575
    16424 1gws:A (2.4) BS08 HEC ? GO:0009055 ... P24092 12467575
    16425 1gws:A (2.4) BS09 HEC ? GO:0009055 ... P24092 12467575
    16426 1gws:A (2.4) BS10 HEC ? GO:0009055 ... P24092 12467575
    16427 1gws:A (2.4) BS11 HEC ? GO:0009055 ... P24092 12467575
    16428 1gws:A (2.4) BS12 HEC ? GO:0009055 ... P24092 12467575
    16429 1gws:A (2.4) BS13 HEC ? GO:0009055 ... P24092 12467575
    16430 1gws:A (2.4) BS14 HEC ? GO:0009055 ... P24092 12467575
    16431 1gws:A (2.4) BS15 HEC ? GO:0009055 ... P24092 12467575
    16432 1gws:A (2.4) BS16 HEC ? GO:0009055 ... P24092 12467575
    16433 1gwt:A (1.7) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 N/A
    16434 1gwt:A (1.7) BS02 CA 1.11.1.7 GO:0004601 ... P00433 N/A
    16435 1gwt:A (1.7) BS03 CA 1.11.1.7 GO:0004601 ... P00433 N/A
    16436 1gwu:A (1.31) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 N/A
    16437 1gwu:A (1.31) BS02 CA 1.11.1.7 GO:0004601 ... P00433 N/A
    16438 1gwu:A (1.31) BS03 CA 1.11.1.7 GO:0004601 ... P00433 N/A
    16439 1gwv:A (2.5) BS01 BGC 2.4.1.87 GO:0005975 ... P14769 12011052
    16440 1gwv:A (2.5) BS02 GAL 2.4.1.87 GO:0005975 ... P14769 12011052
    16441 1gwv:A (2.5) BS03 UDP 2.4.1.87 GO:0005975 ... P14769 12011052 MOAD: Kd=0.053mM
    16442 1gwv:A (2.5) BS04 MN 2.4.1.87 GO:0005975 ... P14769 12011052
    16443 1gwv:B (2.5) BS01 BGC 2.4.1.87 GO:0005975 ... P14769 12011052
    16444 1gwv:B (2.5) BS02 GAL 2.4.1.87 GO:0005975 ... P14769 12011052
    16445 1gwv:B (2.5) BS03 UDP 2.4.1.87 GO:0005975 ... P14769 12011052 MOAD: Kd=0.053mM
    16446 1gwv:B (2.5) BS04 MN 2.4.1.87 GO:0005975 ... P14769 12011052
    16447 1gww:A (1.8) BS01 UDP 2.4.1.87 GO:0005975 ... P14769 12011052 PDBbind: -logKd/Ki=3.59, Kd=0.258mM
    16448 1gww:A (1.8) BS02 MN 2.4.1.87 GO:0005975 ... P14769 12011052
    16449 1gww:B (1.8) BS01 UDP 2.4.1.87 GO:0005975 ... P14769 12011052
    16450 1gww:B (1.8) BS02 MN 2.4.1.87 GO:0005975 ... P14769 12011052
    16451 1gww:B (1.8) BS03 GLC 2.4.1.87 GO:0005975 ... P14769 12011052
    16452 1gwx:A (2.5) BS01 433 ? GO:0003677 ... Q03181 10198642 BindingDB: EC50=190nM
    16453 1gwx:B (2.5) BS01 433 ? GO:0003677 ... Q03181 10198642 BindingDB: EC50=190nM
    16454 1gx0:A (1.8) BS01 UDP 2.4.1.87 GO:0005975 ... P14769 12011052 PDBbind: -logKd/Ki=4.22, Kd=0.060mM
    16455 1gx0:A (1.8) BS02 MN 2.4.1.87 GO:0005975 ... P14769 12011052
    16456 1gx0:B (1.8) BS01 UDP 2.4.1.87 GO:0005975 ... P14769 12011052
    16457 1gx0:B (1.8) BS02 MN 2.4.1.87 GO:0005975 ... P14769 12011052
    16458 1gx0:B (1.8) BS03 GAL 2.4.1.87 GO:0005975 ... P14769 12011052
    16459 1gx1:A (1.8) BS01 ZN 4.6.1.12 GO:0005515 ... P62617 11997478
    16460 1gx1:A (1.8) BS02 CDP 4.6.1.12 GO:0005515 ... P62617 11997478
    16461 1gx1:A (1.8) BS03 CDP 4.6.1.12 GO:0005515 ... P62617 11997478
    16462 1gx1:B (1.8) BS01 CDP 4.6.1.12 GO:0005515 ... P62617 11997478
    16463 1gx1:B (1.8) BS02 ZN 4.6.1.12 GO:0005515 ... P62617 11997478
    16464 1gx1:B (1.8) BS03 CDP 4.6.1.12 GO:0005515 ... P62617 11997478
    16465 1gx1:C (1.8) BS01 CDP 4.6.1.12 GO:0005515 ... P62617 11997478
    16466 1gx1:C (1.8) BS02 CDP 4.6.1.12 GO:0005515 ... P62617 11997478
    16467 1gx1:C (1.8) BS03 ZN 4.6.1.12 GO:0005515 ... P62617 11997478
    16468 1gx2:A (2.2) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 N/A
    16469 1gx2:A (2.2) BS02 BHO 1.11.1.7 GO:0004601 ... P00433 N/A
    16470 1gx2:A (2.2) BS03 CA 1.11.1.7 GO:0004601 ... P00433 N/A
    16471 1gx2:A (2.2) BS04 CA 1.11.1.7 GO:0004601 ... P00433 N/A
    16472 1gx2:B (2.2) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 N/A
    16473 1gx2:B (2.2) BS02 BHO 1.11.1.7 GO:0004601 ... P00433 N/A
    16474 1gx2:B (2.2) BS03 CA 1.11.1.7 GO:0004601 ... P00433 N/A
    16475 1gx2:B (2.2) BS04 CA 1.11.1.7 GO:0004601 ... P00433 N/A
    16476 1gx4:A (1.46) BS01 GAL 2.4.1.87 GO:0005975 ... P14769 12011052
    16477 1gx4:A (1.46) BS02 UDP 2.4.1.87 GO:0005975 ... P14769 12011052 MOAD: Kd=0.053mM
    PDBbind: -logKd/Ki=4.28, Kd=53uM
    16478 1gx4:A (1.46) BS03 MN 2.4.1.87 GO:0005975 ... P14769 12011052
    16479 1gx4:B (1.46) BS01 GAL 2.4.1.87 GO:0005975 ... P14769 12011052
    16480 1gx4:B (1.46) BS02 UDP 2.4.1.87 GO:0005975 ... P14769 12011052 MOAD: Kd=0.053mM
    16481 1gx4:B (1.46) BS03 MN 2.4.1.87 GO:0005975 ... P14769 12011052
    16482 1gx5:A (1.7) BS01 GTP 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0003723 ... P26663 11884572
    16483 1gx5:A (1.7) BS02 GTP 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0003723 ... P26663 11884572
    16484 1gx5:A (1.7) BS03 MN 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0003723 ... P26663 11884572
    16485 1gx5:A (1.7) BS04 MN 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0003723 ... P26663 11884572
    16486 1gx6:A (1.85) BS01 UTP 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0003723 ... P26663 11884572
    16487 1gx6:A (1.85) BS02 UTP 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0003723 ... P26663 11884572
    16488 1gx6:A (1.85) BS03 UTP 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0003723 ... P26663 11884572
    16489 1gx6:A (1.85) BS04 MN 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0003723 ... P26663 11884572
    16490 1gx6:A (1.85) BS05 MN 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0003723 ... P26663 11884572
    16491 1gx7:A (-1.00) BS01 SF4 1.12.7.2 N/A P07598 12885397
    16492 1gx7:A (-1.00) BS02 SF4 1.12.7.2 N/A P07598 12885397
    16493 1gx7:A (-1.00) BS03 SF4 1.12.7.2 N/A P07598 12885397
    16494 1gx7:A (-1.00) BS04 PDT 1.12.7.2 N/A P07598 12885397
    16495 1gx7:A (-1.00) BS05 HEC 1.12.7.2 N/A P07598 12885397
    16496 1gx7:E (-1.00) BS01 HEC ? GO:0009061 ... P00131 12885397
    16497 1gx7:E (-1.00) BS02 HEC ? GO:0009061 ... P00131 12885397
    16498 1gx7:E (-1.00) BS03 HEC ? GO:0009061 ... P00131 12885397
    16499 1gx7:E (-1.00) BS04 HEC ? GO:0009061 ... P00131 12885397
    16500 1gx8:A (2.4) BS01 RTL ? GO:0005515 ... P02754 12054801 PDBbind: -logKd/Ki=6.37, Kd=0.43uM
    BindingDB: Kd=36nM
    16501 1gx9:A (2.34) BS01 REA ? GO:0005515 ... P02754 12054801
    16502 1gxa:A (2.35) BS01 PLM ? GO:0005515 ... P02754 12054801
    16503 1gxb:A (2.65) BS01 MG 2.4.2.18 GO:0000162 ... P50384 12093726
    16504 1gxb:A (2.65) BS02 POP 2.4.2.18 GO:0000162 ... P50384 12093726
    16505 1gxb:B (2.65) BS01 POP 2.4.2.18 GO:0000162 ... P50384 12093726
    16506 1gxb:C (2.65) BS01 MG 2.4.2.18 GO:0000162 ... P50384 12093726
    16507 1gxb:C (2.65) BS02 POP 2.4.2.18 GO:0000162 ... P50384 12093726
    16508 1gxb:D (2.65) BS01 POP 2.4.2.18 GO:0000162 ... P50384 12093726
    16509 1gxb:D (2.65) BS02 MG 2.4.2.18 GO:0000162 ... P50384 12093726
    16510 1gxc:A (2.7) BS01 peptide 2.7.11.1 N/A O96017 12049740
    16511 1gxc:D (2.7) BS01 peptide 2.7.11.1 N/A O96017 12049740
    16512 1gxc:D (2.7) BS02 peptide 2.7.11.1 N/A O96017 12049740
    16513 1gxc:G (2.7) BS01 peptide 2.7.11.1 N/A O96017 12049740
    16514 1gxc:G (2.7) BS02 peptide 2.7.11.1 N/A O96017 12049740
    16515 1gxc:J (2.7) BS01 peptide 2.7.11.1 N/A O96017 12049740
    16516 1gxd:A (3.1) BS01 ZN 3.4.24.24 GO:0001525 ... P08253 12032297
    16517 1gxd:A (3.1) BS02 ZN 3.4.24.24 GO:0001525 ... P08253 12032297
    16518 1gxd:A (3.1) BS03 CA 3.4.24.24 GO:0001525 ... P08253 12032297
    16519 1gxd:B (3.1) BS01 ZN 3.4.24.24 GO:0001525 ... P08253 12032297
    16520 1gxd:B (3.1) BS02 ZN 3.4.24.24 GO:0001525 ... P08253 12032297
    16521 1gxd:B (3.1) BS03 CA 3.4.24.24 GO:0001525 ... P08253 12032297
    16522 1gxf:A (2.7) BS01 FAD 1.8.1.12 GO:0004362 ... P28593 15102853
    16523 1gxf:A (2.7) BS02 QUM 1.8.1.12 GO:0004362 ... P28593 15102853
    16524 1gxf:A (2.7) BS03 QUM 1.8.1.12 GO:0004362 ... P28593 15102853
    16525 1gxf:B (2.7) BS01 FAD 1.8.1.12 GO:0004362 ... P28593 15102853
    16526 1gxf:B (2.7) BS02 FAD 1.8.1.12 GO:0004362 ... P28593 15102853
    16527 1gxf:B (2.7) BS03 QUM 1.8.1.12 GO:0004362 ... P28593 15102853
    16528 1gxf:B (2.7) BS04 QUM 1.8.1.12 GO:0004362 ... P28593 15102853
    16529 1gxo:A (2.05) BS01 ADA 4.2.2.2 N/A Q9F7L3 12221284
    16530 1gxo:A (2.05) BS02 ADA 4.2.2.2 N/A Q9F7L3 12221284
    16531 1gxo:A (2.05) BS03 ADA 4.2.2.2 N/A Q9F7L3 12221284
    16532 1gxp:A (2.5) BS01 dna ? GO:0000160 ... P0AFJ5 12015152
    16533 1gxp:A (2.5) BS02 dna ? GO:0000160 ... P0AFJ5 12015152
    16534 1gxp:B (2.5) BS01 dna ? GO:0000160 ... P0AFJ5 12015152
    16535 1gxp:B (2.5) BS02 dna ? GO:0000160 ... P0AFJ5 12015152
    16536 1gxp:E (2.5) BS01 dna ? GO:0000160 ... P0AFJ5 12015152
    16537 1gxp:E (2.5) BS02 dna ? GO:0000160 ... P0AFJ5 12015152
    16538 1gxp:F (2.5) BS01 dna ? GO:0000160 ... P0AFJ5 12015152
    16539 1gxp:F (2.5) BS02 dna ? GO:0000160 ... P0AFJ5 12015152
    16540 1gxr:A (1.65) BS01 CA ? GO:0005634 ... Q04724 12057191
    16541 1gxs:A (2.3) BS01 BEZ 4.1.2.11 GO:0004185 ... P52708 12356304
    16542 1gxs:C (2.3) BS01 BEZ 4.1.2.11 GO:0004185 ... P52708 12356304
    16543 1gxu:A (1.27) BS01 2HP 6.2.-.- N/A P30131 12206761
    16544 1gxw:A (2.18) BS01 VAL 3.4.24.27 GO:0004222 ... P00800 12454500
    16545 1gxw:A (2.18) BS02 LYS 3.4.24.27 GO:0004222 ... P00800 12454500
    16546 1gxw:A (2.18) BS03 CA 3.4.24.27 GO:0004222 ... P00800 12454500
    16547 1gxw:A (2.18) BS04 CA 3.4.24.27 GO:0004222 ... P00800 12454500
    16548 1gxw:A (2.18) BS05 CA 3.4.24.27 GO:0004222 ... P00800 12454500
    16549 1gxw:A (2.18) BS06 CA 3.4.24.27 GO:0004222 ... P00800 12454500
    16550 1gxw:A (2.18) BS07 ZN 3.4.24.27 GO:0004222 ... P00800 12454500
    16551 1gxw:A (2.18) BS08 SCN 3.4.24.27 GO:0004222 ... P00800 12454500
    16552 1gxz:A (2.1) BS01 BRT 2.4.2.31
    3.2.2.5
    GO:0106274 ... P20974 12270706
    16553 1gxz:B (2.1) BS01 BRT 2.4.2.31
    3.2.2.5
    GO:0106274 ... P20974 12270706
    16554 1gy1:A (1.65) BS01 CU ? GO:0005507 ... P0C918 12079384
    16555 1gy1:B (1.65) BS01 CU ? GO:0005507 ... P0C918 12079384
    16556 1gy2:A (1.82) BS01 CU ? GO:0005507 ... P0C918 12079384
    16557 1gy2:B (1.82) BS01 CU ? GO:0005507 ... P0C918 12079384
    16558 1gy3:A (2.7) BS01 peptide 2.7.11.22 GO:0000082 ... P24941 12044161
    16559 1gy3:A (2.7) BS02 ATP 2.7.11.22 GO:0000082 ... P24941 12044161
    16560 1gy3:A (2.7) BS03 MG 2.7.11.22 GO:0000082 ... P24941 12044161
    16561 1gy3:A (2.7) BS04 NO3 2.7.11.22 GO:0000082 ... P24941 12044161
    16562 1gy3:C (2.7) BS01 peptide 2.7.11.22 GO:0000082 ... P24941 12044161
    16563 1gy3:C (2.7) BS02 ATP 2.7.11.22 GO:0000082 ... P24941 12044161
    16564 1gy3:C (2.7) BS03 MG 2.7.11.22 GO:0000082 ... P24941 12044161
    16565 1gy3:D (2.7) BS01 peptide ? GO:0016538 ... P20248 12044161
    16566 1gy8:A (2.0) BS01 NAD 5.1.3.2 GO:0000166 ... Q8T8E9 12615316
    16567 1gy8:A (2.0) BS02 UDP 5.1.3.2 GO:0000166 ... Q8T8E9 12615316
    16568 1gy8:B (2.0) BS01 NAD 5.1.3.2 GO:0000166 ... Q8T8E9 12615316
    16569 1gy8:B (2.0) BS02 UDP 5.1.3.2 GO:0000166 ... Q8T8E9 12615316
    16570 1gy8:C (2.0) BS01 NAD 5.1.3.2 GO:0000166 ... Q8T8E9 12615316
    16571 1gy8:C (2.0) BS02 UDP 5.1.3.2 GO:0000166 ... Q8T8E9 12615316
    16572 1gy8:D (2.0) BS01 NAD 5.1.3.2 GO:0000166 ... Q8T8E9 12615316
    16573 1gy8:D (2.0) BS02 UDP 5.1.3.2 GO:0000166 ... Q8T8E9 12615316
    16574 1gy9:A (2.5) BS01 FE 1.14.11.17 GO:0000908 ... P37610 11955067
    16575 1gy9:A (2.5) BS02 FE 1.14.11.17 GO:0000908 ... P37610 11955067
    16576 1gy9:A (2.5) BS03 AKG 1.14.11.17 GO:0000908 ... P37610 11955067
    16577 1gy9:B (2.5) BS01 FE 1.14.11.17 GO:0000908 ... P37610 11955067
    16578 1gy9:B (2.5) BS02 AKG 1.14.11.17 GO:0000908 ... P37610 11955067
    16579 1gyb:B (1.9) BS01 peptide ? GO:0005635 ... P33331 12065398
    16580 1gyb:B (1.9) BS02 peptide ? GO:0005635 ... P33331 12065398
    16581 1gyb:C (1.9) BS01 peptide ? GO:0005635 ... P33331 12065398
    16582 1gyb:D (1.9) BS01 peptide ? GO:0005635 ... P33331 12065398
    16583 1gyb:D (1.9) BS02 peptide ? GO:0005635 ... P33331 12065398
    16584 1gyc:A (1.9) BS01 CU 1.10.3.2 GO:0005507 ... Q12718 12163489
    16585 1gyc:A (1.9) BS02 CU 1.10.3.2 GO:0005507 ... Q12718 12163489
    16586 1gyc:A (1.9) BS03 CU 1.10.3.2 GO:0005507 ... Q12718 12163489
    16587 1gyc:A (1.9) BS04 CU 1.10.3.2 GO:0005507 ... Q12718 12163489
    16588 1gye:B (2.5) BS01 AHR 3.2.1.55 GO:0004553 ... P95470 12198486
    16589 1gye:B (2.5) BS02 AHR 3.2.1.55 GO:0004553 ... P95470 12198486
    16590 1gye:B (2.5) BS03 AHR 3.2.1.55 GO:0004553 ... P95470 12198486
    16591 1gyg:A (1.9) BS01 ZN 3.1.4.3 GO:0004629 ... P0C216 12051905
    16592 1gyg:A (1.9) BS02 ZN 3.1.4.3 GO:0004629 ... P0C216 12051905
    16593 1gyg:B (1.9) BS01 ZN 3.1.4.3 GO:0004629 ... P0C216 12051905
    16594 1gyg:B (1.9) BS02 ZN 3.1.4.3 GO:0004629 ... P0C216 12051905
    16595 1gyk:A (2.2) BS01 CA ? GO:0001849 ... P02743 12126626
    16596 1gyk:A (2.2) BS02 CA ? GO:0001849 ... P02743 12126626
    16597 1gyk:A (2.2) BS03 CDG ? GO:0001849 ... P02743 12126626
    16598 1gyk:B (2.2) BS01 CA ? GO:0001849 ... P02743 12126626
    16599 1gyk:B (2.2) BS02 CA ? GO:0001849 ... P02743 12126626
    16600 1gyk:B (2.2) BS03 CDG ? GO:0001849 ... P02743 12126626

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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