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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    13401 1fx7:D (2.0) BS02 CO ? GO:0003677 ... P9WMH1 11053439
    13402 1fx7:D (2.0) BS03 CO ? GO:0003677 ... P9WMH1 11053439
    13403 1fx8:A (2.2) BS01 GOL ? GO:0005372 ... P0AER0 11039922
    13404 1fx8:A (2.2) BS02 GOL ? GO:0005372 ... P0AER0 11039922
    13405 1fx9:A (2.0) BS01 CA 3.1.1.4 GO:0002446 ... P00592 11170377
    13406 1fx9:A (2.0) BS02 SO4 3.1.1.4 GO:0002446 ... P00592 11170377
    13407 1fx9:A (2.0) BS03 MJI 3.1.1.4 GO:0002446 ... P00592 11170377
    13408 1fx9:B (2.0) BS01 MJI 3.1.1.4 GO:0002446 ... P00592 11170377
    13409 1fx9:B (2.0) BS02 CA 3.1.1.4 GO:0002446 ... P00592 11170377
    13410 1fx9:B (2.0) BS03 SO4 3.1.1.4 GO:0002446 ... P00592 11170377
    13411 1fx9:B (2.0) BS04 SO4 3.1.1.4 GO:0002446 ... P00592 11170377
    13412 1fxa:A (2.5) BS01 FES ? GO:0009055 ... P0A3C7 1902376
    13413 1fxa:B (2.5) BS01 FES ? GO:0009055 ... P0A3C7 1902376
    13414 1fxd:A (1.7) BS01 F3S ? GO:0005506 ... P00209 2056535
    13415 1fxf:A (1.85) BS01 CA 3.1.1.4 GO:0002446 ... P00592 11170377
    13416 1fxf:A (1.85) BS02 PO4 3.1.1.4 GO:0002446 ... P00592 11170377
    13417 1fxf:A (1.85) BS03 PO4 3.1.1.4 GO:0002446 ... P00592 11170377
    13418 1fxf:A (1.85) BS04 MJI 3.1.1.4 GO:0002446 ... P00592 11170377
    13419 1fxf:A (1.85) BS05 PO4 3.1.1.4 GO:0002446 ... P00592 11170377
    13420 1fxf:B (1.85) BS01 MJI 3.1.1.4 GO:0002446 ... P00592 11170377
    13421 1fxf:B (1.85) BS02 CA 3.1.1.4 GO:0002446 ... P00592 11170377
    13422 1fxf:B (1.85) BS03 PO4 3.1.1.4 GO:0002446 ... P00592 11170377
    13423 1fxf:B (1.85) BS04 PO4 3.1.1.4 GO:0002446 ... P00592 11170377
    13424 1fxf:B (1.85) BS05 PO4 3.1.1.4 GO:0002446 ... P00592 11170377
    13425 1fxh:A (1.97) BS01 PAC 3.5.1.11 GO:0016787 ... P06875 11239085
    13426 1fxh:B (1.97) BS01 CA 3.5.1.11 GO:0016787 ... P06875 11239085
    13427 1fxh:B (1.97) BS02 PAC 3.5.1.11 GO:0016787 ... P06875 11239085
    13428 1fxi:A (2.2) BS01 FES ? GO:0009055 ... P00250 2123937
    13429 1fxi:B (2.2) BS01 FES ? GO:0009055 ... P00250 2123937
    13430 1fxi:C (2.2) BS01 FES ? GO:0009055 ... P00250 2123937
    13431 1fxi:D (2.2) BS01 FES ? GO:0009055 ... P00250 2123937
    13432 1fxl:A (1.8) BS01 rna ? GO:0003676 ... P26378 11175903
    13433 1fxo:A (1.66) BS01 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13434 1fxo:A (1.66) BS02 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13435 1fxo:A (1.66) BS03 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13436 1fxo:B (1.66) BS01 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13437 1fxo:B (1.66) BS02 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13438 1fxo:B (1.66) BS03 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13439 1fxo:C (1.66) BS01 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13440 1fxo:C (1.66) BS02 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13441 1fxo:C (1.66) BS03 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13442 1fxo:D (1.66) BS01 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13443 1fxo:D (1.66) BS02 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13444 1fxo:D (1.66) BS03 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13445 1fxo:E (1.66) BS01 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13446 1fxo:E (1.66) BS02 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13447 1fxo:E (1.66) BS03 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13448 1fxo:F (1.66) BS01 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13449 1fxo:F (1.66) BS02 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13450 1fxo:F (1.66) BS03 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13451 1fxo:G (1.66) BS01 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13452 1fxo:G (1.66) BS02 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13453 1fxo:G (1.66) BS03 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13454 1fxo:H (1.66) BS01 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13455 1fxo:H (1.66) BS02 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13456 1fxo:H (1.66) BS03 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13457 1fxp:A (1.8) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 11115499
    13458 1fxp:B (1.8) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 11115499
    13459 1fxq:A (1.8) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 11115499
    13460 1fxq:A (1.8) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 11115499
    13461 1fxq:B (1.8) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 11115499
    13462 1fxq:B (1.8) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 11115499
    13463 1fxr:A (2.3) BS01 SF4 ? GO:0005506 ... P00210 7803404
    13464 1fxr:B (2.3) BS01 SO4 ? GO:0005506 ... P00210 7803404
    13465 1fxr:B (2.3) BS02 SF4 ? GO:0005506 ... P00210 7803404
    13466 1fxs:A (2.3) BS01 NAP 1.1.1.271 GO:0005737 ... P32055 9862812
    13467 1fxu:A (2.2) BS01 PO4 2.4.2.1 GO:0003824 ... P55859 11134924
    13468 1fxu:A (2.2) BS02 GU7 2.4.2.1 GO:0003824 ... P55859 11134924
    13469 1fxv:A (2.25) BS01 PNN 3.5.1.11 GO:0016787 ... P06875 11239085
    13470 1fxv:B (2.25) BS01 PNN 3.5.1.11 GO:0016787 ... P06875 11239085
    13471 1fxv:B (2.25) BS02 CA 3.5.1.11 GO:0016787 ... P06875 11239085
    13472 1fxw:A (2.1) BS01 CA 3.1.1.47 GO:0003847 ... Q29460 11522926
    13473 1fxy:A (2.15) BS01 0G6 3.4.21.4 GO:0004252 ... P07477 9707558
    13474 1fy4:A (0.81) BS01 peptide 3.4.21.4 GO:0004252 ... P35049 11134922
    13475 1fy5:A (0.81) BS01 peptide 3.4.21.4 GO:0004252 ... P35049 11134922
    13476 1fy6:A (1.89) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 11115499
    13477 1fy6:A (1.89) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 11115499
    13478 1fy6:B (1.89) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 11115499
    13479 1fy7:A (2.0) BS01 COA 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q08649 11106757
    13480 1fy8:E (1.7) BS01 CA 3.4.21.4 GO:0004252 ... P00763 11420435
    13481 1fyd:A (2.25) BS01 AMP 6.3.1.5 GO:0003952 ... P08164 11375500
    13482 1fyd:A (2.25) BS02 POP 6.3.1.5 GO:0003952 ... P08164 11375500
    13483 1fyf:A (1.65) BS01 ZN 6.1.1.3 GO:0000166 ... P0A8M3 11136973
    13484 1fyf:A (1.65) BS02 SSA 6.1.1.3 GO:0000166 ... P0A8M3 11136973
    13485 1fyf:B (1.65) BS01 ZN 6.1.1.3 GO:0000166 ... P0A8M3 11136973
    13486 1fyf:B (1.65) BS02 SSA 6.1.1.3 GO:0000166 ... P0A8M3 11136973
    13487 1fyk:A (2.5) BS01 dna ? GO:0003700 ... P22121 11599025
    13488 1fyn:A (2.3) BS01 peptide 2.7.10.2 N/A P06241 7664083
    13489 1fyr:A (2.4) BS01 peptide ? N/A P62993 11063574
    13490 1fyr:B (2.4) BS01 peptide ? N/A P62993 11063574
    13491 1fyr:C (2.4) BS01 peptide ? N/A P62993 11063574
    13492 1fyr:D (2.4) BS01 peptide ? N/A P62993 11063574
    13493 1fys:A (2.0) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 11513591
    13494 1fyt:A (2.6) BS01 peptide ? GO:0006955 ... P01903 11060013
    13495 1fyt:B (2.6) BS01 peptide ? GO:0006955 ... P01911 11060013
    13496 1fyt:D (2.6) BS01 peptide ? N/A P01848 11060013
    13497 1fyt:E (2.6) BS01 peptide ? N/A P01850 11060013
    13498 1fyu:A (2.6) BS01 GAL ? GO:0030246 ... P16404 11274466
    13499 1fyu:A (2.6) BS02 MN ? GO:0030246 ... P16404 11274466
    13500 1fyu:A (2.6) BS03 CA ? GO:0030246 ... P16404 11274466
    13501 1fyu:B (2.6) BS01 GAL ? GO:0030246 ... P16404 11274466
    13502 1fyu:B (2.6) BS02 MN ? GO:0030246 ... P16404 11274466
    13503 1fyu:B (2.6) BS03 CA ? GO:0030246 ... P16404 11274466
    13504 1fyz:A (2.15) BS01 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    13505 1fyz:A (2.15) BS02 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    13506 1fyz:B (2.15) BS01 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    13507 1fyz:B (2.15) BS02 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    13508 1fz0:A (2.07) BS01 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    13509 1fz0:A (2.07) BS02 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    13510 1fz0:B (2.07) BS01 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    13511 1fz0:B (2.07) BS02 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    13512 1fz0:C (2.07) BS01 CA 1.14.13.25 GO:0004497 ... P18798 11456616
    13513 1fz1:A (1.96) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    13514 1fz1:A (1.96) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    13515 1fz1:B (1.96) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    13516 1fz1:B (1.96) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    13517 1fz1:C (1.96) BS01 CA 1.14.13.25 GO:0004497 ... P18798 11456616
    13518 1fz2:A (2.15) BS01 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    13519 1fz2:A (2.15) BS02 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    13520 1fz2:B (2.15) BS01 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    13521 1fz2:B (2.15) BS02 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    13522 1fz2:C (2.15) BS01 CA 1.14.13.25 GO:0004497 ... P18798 11456616
    13523 1fz3:A (2.03) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    13524 1fz3:A (2.03) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    13525 1fz3:B (2.03) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    13526 1fz3:B (2.03) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    13527 1fz4:A (2.38) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    13528 1fz4:A (2.38) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    13529 1fz4:B (2.38) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    13530 1fz4:B (2.38) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11456616
    13531 1fz5:A (2.4) BS01 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    13532 1fz5:B (2.4) BS01 FE2 1.14.13.25 GO:0004497 ... P22869 11456616
    13533 1fz6:A (2.05) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11456795
    13534 1fz6:A (2.05) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11456795
    13535 1fz6:B (2.05) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11456795
    13536 1fz6:B (2.05) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11456795
    13537 1fz6:B (2.05) BS03 CA 1.14.13.25 GO:0004497 ... P22869 11456795
    13538 1fz7:A (1.96) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11456795
    13539 1fz7:A (1.96) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11456795
    13540 1fz7:B (1.96) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11456795
    13541 1fz7:B (1.96) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11456795
    13542 1fz8:A (2.1) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    13543 1fz8:A (2.1) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    13544 1fz8:A (2.1) BS03 2BM 1.14.13.25 GO:0004497 ... P22869 11297413
    13545 1fz8:A (2.1) BS04 2BM 1.14.13.25 GO:0004497 ... P22869 11297413
    13546 1fz8:B (2.1) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    13547 1fz8:B (2.1) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    13548 1fz8:B (2.1) BS03 2BM 1.14.13.25 GO:0004497 ... P22869 11297413
    13549 1fz8:B (2.1) BS04 2BM 1.14.13.25 GO:0004497 ... P22869 11297413
    13550 1fz8:B (2.1) BS05 2BM 1.14.13.25 GO:0004497 ... P22869 11297413
    13551 1fz8:C (2.1) BS01 CA 1.14.13.25 GO:0004497 ... P18798 11297413
    13552 1fz8:C (2.1) BS02 2BM 1.14.13.25 GO:0004497 ... P18798 11297413
    13553 1fz8:C (2.1) BS03 2BM 1.14.13.25 GO:0004497 ... P18798 11297413
    13554 1fz8:C (2.1) BS04 2BM 1.14.13.25 GO:0004497 ... P18798 11297413
    13555 1fz8:D (2.1) BS01 2BM 1.14.13.25 GO:0004497 ... P18798 11297413
    13556 1fz8:D (2.1) BS02 2BM 1.14.13.25 GO:0004497 ... P18798 11297413
    13557 1fz8:D (2.1) BS03 2BM 1.14.13.25 GO:0004497 ... P18798 11297413
    13558 1fz9:A (2.3) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    13559 1fz9:A (2.3) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    13560 1fz9:A (2.3) BS03 ETI 1.14.13.25 GO:0004497 ... P22869 11297413
    13561 1fz9:A (2.3) BS04 ETI 1.14.13.25 GO:0004497 ... P22869 11297413
    13562 1fz9:B (2.3) BS01 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    13563 1fz9:B (2.3) BS02 FE 1.14.13.25 GO:0004497 ... P22869 11297413
    13564 1fz9:B (2.3) BS03 ETI 1.14.13.25 GO:0004497 ... P22869 11297413
    13565 1fz9:C (2.3) BS01 ETI 1.14.13.25 GO:0004497 ... P18798 11297413
    13566 1fz9:D (2.3) BS01 ETI 1.14.13.25 GO:0004497 ... P18798 11297413
    13567 1fz9:D (2.3) BS02 ETI 1.14.13.25 GO:0004497 ... P18798 11297413
    13568 1fza:C (2.9) BS01 CA ? GO:0005102 ... P02679 9333233
    13569 1fza:F (2.9) BS01 CA ? GO:0005102 ... P02679 9333233
    13570 1fzb:C (2.9) BS01 peptide ? GO:0005102 ... P02679 9333233
    13571 1fzb:C (2.9) BS02 CA ? GO:0005102 ... P02679 9333233
    13572 1fzb:F (2.9) BS01 peptide ? GO:0005102 ... P02679 9333233
    13573 1fzb:F (2.9) BS02 CA ? GO:0005102 ... P02679 9333233
    13574 1fzc:B (2.3) BS01 peptide ? GO:0005102 ... P02675 9628725
    13575 1fzc:B (2.3) BS02 CA ? GO:0005102 ... P02675 9628725
    13576 1fzc:C (2.3) BS01 peptide ? GO:0005102 ... P02679 9628725
    13577 1fzc:C (2.3) BS02 CA ? GO:0005102 ... P02679 9628725
    13578 1fzc:E (2.3) BS01 peptide ? GO:0005102 ... P02675 9628725
    13579 1fzc:E (2.3) BS02 CA ? GO:0005102 ... P02675 9628725
    13580 1fzc:F (2.3) BS01 peptide ? GO:0005102 ... P02679 9628725
    13581 1fzc:F (2.3) BS02 CA ? GO:0005102 ... P02679 9628725
    13582 1fzd:A (2.1) BS01 CA ? GO:0007596 ... P02671 9689040
    13583 1fzd:B (2.1) BS01 CA ? GO:0007596 ... P02671 9689040
    13584 1fzd:C (2.1) BS01 CA ? GO:0007596 ... P02671 9689040
    13585 1fzd:D (2.1) BS01 CA ? GO:0007596 ... P02671 9689040
    13586 1fzd:E (2.1) BS01 CA ? GO:0007596 ... P02671 9689040
    13587 1fzd:F (2.1) BS01 CA ? GO:0007596 ... P02671 9689040
    13588 1fzd:G (2.1) BS01 CA ? GO:0007596 ... P02671 9689040
    13589 1fzd:H (2.1) BS01 CA ? GO:0007596 ... P02671 9689040
    13590 1fze:B (3.0) BS01 CA ? GO:0005102 ... P02675 10074346
    13591 1fze:B (3.0) BS02 CA ? GO:0005102 ... P02675 10074346
    13592 1fze:C (3.0) BS01 CA ? GO:0005102 ... P02679 10074346
    13593 1fze:E (3.0) BS01 CA ? GO:0005102 ... P02675 10074346
    13594 1fze:E (3.0) BS02 CA ? GO:0005102 ... P02675 10074346
    13595 1fze:F (3.0) BS01 CA ? GO:0005102 ... P02679 10074346
    13596 1fzf:B (2.7) BS01 peptide ? GO:0005102 ... P02675 10074346
    13597 1fzf:B (2.7) BS02 CA ? GO:0005102 ... P02675 10074346
    13598 1fzf:C (2.7) BS01 peptide ? GO:0005102 ... P02679 10074346
    13599 1fzf:C (2.7) BS02 CA ? GO:0005102 ... P02679 10074346
    13600 1fzf:C (2.7) BS03 CA ? GO:0005102 ... P02679 10074346

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218