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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    10001 1efl:C (2.6) BS04 TTN 1.1.1.38 GO:0004470 ... P23368 10700286
    10002 1efl:D (2.6) BS01 MG 1.1.1.38 GO:0004470 ... P23368 10700286
    10003 1efl:D (2.6) BS02 NAD 1.1.1.38 GO:0004470 ... P23368 10700286
    10004 1efl:D (2.6) BS03 NAD 1.1.1.38 GO:0004470 ... P23368 10700286
    10005 1efl:D (2.6) BS04 TTN 1.1.1.38 GO:0004470 ... P23368 10700286
    10006 1efm:A (2.7) BS01 GDP ? GO:0003723 ... P0CE48 3898365
    10007 1efp:A (2.6) BS01 FAD ? GO:0009055 ... P38974 10026281
    10008 1efp:B (2.6) BS01 FAD ? GO:0009055 ... P38975 10026281
    10009 1efp:B (2.6) BS02 AMP ? GO:0009055 ... P38975 10026281
    10010 1efp:C (2.6) BS01 FAD ? GO:0009055 ... P38974 10026281
    10011 1efp:D (2.6) BS01 FAD ? GO:0009055 ... P38975 10026281
    10012 1efp:D (2.6) BS02 AMP ? GO:0009055 ... P38975 10026281
    10013 1efr:A (3.1) BS01 peptide 3.6.1.34 GO:0005515 ... P19483 8790345
    10014 1efr:A (3.1) BS02 ANP 3.6.1.34 GO:0005515 ... P19483 8790345
    10015 1efr:B (3.1) BS01 peptide 3.6.1.34 GO:0005515 ... P19483 8790345
    10016 1efr:B (3.1) BS02 ANP 3.6.1.34 GO:0005515 ... P19483 8790345
    10017 1efr:C (3.1) BS01 ANP 3.6.1.34 GO:0005515 ... P19483 8790345
    10018 1efr:D (3.1) BS01 ADP 7.1.2.2 GO:0005515 ... P00829 8790345
    10019 1efr:E (3.1) BS01 peptide 7.1.2.2 GO:0005515 ... P00829 8790345
    10020 1efr:F (3.1) BS01 ANP 7.1.2.2 GO:0005515 ... P00829 8790345
    10021 1efr:G (3.1) BS01 peptide 3.6.1.34 GO:0005515 ... P05631 8790345
    10022 1eft:A (2.5) BS01 MG ? GO:0003746 ... Q01698 8069622
    10023 1eft:A (2.5) BS02 GNP ? GO:0003746 ... Q01698 8069622
    10024 1efv:A (2.1) BS01 FAD ? GO:0005515 ... P13804 8962055
    10025 1efv:B (2.1) BS01 AMP ? GO:0005515 ... P38117 8962055
    10026 1efw:A (3.0) BS01 rna 6.1.1.12 GO:0000166 ... P36419 10843857
    10027 1efw:B (3.0) BS01 rna 6.1.1.12 GO:0000166 ... P36419 10843857
    10028 1efx:A (3.0) BS01 peptide ? N/A P10321 10850706
    10029 1efx:D (3.0) BS01 peptide ? N/A P43627 10850706
    10030 1efy:A (2.2) BS01 BZC 2.4.2.-
    2.4.2.30
    GO:0003950 ... P26446 11063605 MOAD: Ki=6nM
    PDBbind: -logKd/Ki=8.22, Ki=6nM
    10031 1efz:A (2.0) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 10413112
    10032 1efz:A (2.0) BS02 PRF 2.4.2.29 GO:0002099 ... P28720 10413112
    10033 1eg2:A (1.75) BS01 MTA 2.1.1.72 GO:0003676 ... P14751 11024175
    10034 1eg4:A (2.0) BS01 peptide ? N/A P11532 10932245
    10035 1eg5:A (2.0) BS01 PLP 2.8.1.7 GO:0008483 ... Q9X218 10715213
    10036 1eg5:B (2.0) BS01 PLP 2.8.1.7 GO:0008483 ... Q9X218 10715213
    10037 1eg9:A (1.6) BS01 FE 1.14.12.12 GO:0005506 ... P0A110 10669618
    10038 1eg9:A (1.6) BS02 FES 1.14.12.12 GO:0005506 ... P0A110 10669618
    10039 1eg9:A (1.6) BS03 IND 1.14.12.12 GO:0005506 ... P0A110 10669618
    10040 1egc:A (2.6) BS01 CO8 1.3.8.7 GO:0001889 ... P11310 8823176
    10041 1egc:A (2.6) BS02 FAD 1.3.8.7 GO:0001889 ... P11310 8823176
    10042 1egc:A (2.6) BS03 FAD 1.3.8.7 GO:0001889 ... P11310 8823176
    10043 1egc:B (2.6) BS01 FAD 1.3.8.7 GO:0001889 ... P11310 8823176
    10044 1egc:B (2.6) BS02 CO8 1.3.8.7 GO:0001889 ... P11310 8823176
    10045 1egc:B (2.6) BS03 FAD 1.3.8.7 GO:0001889 ... P11310 8823176
    10046 1egc:C (2.6) BS01 CO8 1.3.8.7 GO:0001889 ... P11310 8823176
    10047 1egc:C (2.6) BS02 FAD 1.3.8.7 GO:0001889 ... P11310 8823176
    10048 1egc:C (2.6) BS03 FAD 1.3.8.7 GO:0001889 ... P11310 8823176
    10049 1egc:D (2.6) BS01 FAD 1.3.8.7 GO:0001889 ... P11310 8823176
    10050 1egc:D (2.6) BS02 CO8 1.3.8.7 GO:0001889 ... P11310 8823176
    10051 1egc:D (2.6) BS03 FAD 1.3.8.7 GO:0001889 ... P11310 8823176
    10052 1egd:A (2.4) BS01 FAD 1.3.8.7 GO:0001889 ... P11310 8823176
    10053 1egd:A (2.4) BS02 FAD 1.3.8.7 GO:0001889 ... P11310 8823176
    10054 1egd:B (2.4) BS01 FAD 1.3.8.7 GO:0001889 ... P11310 8823176
    10055 1egd:B (2.4) BS02 FAD 1.3.8.7 GO:0001889 ... P11310 8823176
    10056 1egd:C (2.4) BS01 FAD 1.3.8.7 GO:0001889 ... P11310 8823176
    10057 1egd:C (2.4) BS02 FAD 1.3.8.7 GO:0001889 ... P11310 8823176
    10058 1egd:D (2.4) BS01 FAD 1.3.8.7 GO:0001889 ... P11310 8823176
    10059 1egd:D (2.4) BS02 FAD 1.3.8.7 GO:0001889 ... P11310 8823176
    10060 1ege:A (2.75) BS01 FAD 1.3.8.7 GO:0001889 ... P11310 8823176
    10061 1ege:A (2.75) BS02 FAD 1.3.8.7 GO:0001889 ... P11310 8823176
    10062 1ege:B (2.75) BS01 FAD 1.3.8.7 GO:0001889 ... P11310 8823176
    10063 1ege:B (2.75) BS02 FAD 1.3.8.7 GO:0001889 ... P11310 8823176
    10064 1ege:C (2.75) BS01 FAD 1.3.8.7 GO:0001889 ... P11310 8823176
    10065 1ege:C (2.75) BS02 FAD 1.3.8.7 GO:0001889 ... P11310 8823176
    10066 1ege:D (2.75) BS01 FAD 1.3.8.7 GO:0001889 ... P11310 8823176
    10067 1ege:D (2.75) BS02 FAD 1.3.8.7 GO:0001889 ... P11310 8823176
    10068 1egg:A (2.3) BS01 CA ? N/A P22897 10779515
    10069 1egg:B (2.3) BS01 CA ? N/A P22897 10779515
    10070 1egh:A (2.0) BS01 PGA 4.2.3.3 GO:0005737 ... P0A731 10715115 MOAD: Ki=2uM
    PDBbind: -logKd/Ki=5.70, Ki=2uM
    10071 1egh:B (2.0) BS01 PGA 4.2.3.3 GO:0005737 ... P0A731 10715115 MOAD: Ki=2uM
    10072 1egh:C (2.0) BS01 PGA 4.2.3.3 GO:0005737 ... P0A731 10715115 MOAD: Ki=2uM
    10073 1egh:D (2.0) BS01 PGA 4.2.3.3 GO:0005737 ... P0A731 10715115 MOAD: Ki=2uM
    10074 1egh:E (2.0) BS01 PGA 4.2.3.3 GO:0005737 ... P0A731 10715115 MOAD: Ki=2uM
    10075 1egh:F (2.0) BS01 PGA 4.2.3.3 GO:0005737 ... P0A731 10715115 MOAD: Ki=2uM
    PDBbind: -logKd/Ki=5.70, Ki=2uM
    10076 1egi:A (2.3) BS01 CA ? N/A P22897 10779515
    10077 1egi:B (2.3) BS01 CA ? N/A P22897 10779515
    10078 1egm:A (1.85) BS01 CNC 4.2.1.28 GO:0003824 ... Q59470 10903944
    10079 1egm:B (1.85) BS01 CNC 4.2.1.28 GO:0016829 ... Q59471 10903944
    10080 1egm:E (1.85) BS01 CNC 4.2.1.28 GO:0016829 ... Q59471 10903944
    10081 1egm:L (1.85) BS01 CNC 4.2.1.28 GO:0003824 ... Q59470 10903944
    10082 1egn:A (1.6) BS01 CO 3.2.1.91 GO:0004553 ... P62694 11336632
    10083 1egn:A (1.6) BS02 CO 3.2.1.91 GO:0004553 ... P62694 11336632
    10084 1egp:A (2.0) BS01 peptide ? GO:0004867 ... P01051 8425603
    10085 1egq:A (1.55) BS01 CA 3.4.21.64 GO:0004252 ... P06873 11438752
    10086 1egq:A (1.55) BS02 CA 3.4.21.64 GO:0004252 ... P06873 11438752
    10087 1egu:A (1.56) BS01 SO4 4.2.2.1 GO:0003824 ... Q54873 10716923
    10088 1egv:A (1.75) BS01 COY 4.2.1.28 GO:0003824 ... Q59470 10903944
    10089 1egv:B (1.75) BS01 COY 4.2.1.28 GO:0016829 ... Q59471 10903944
    10090 1egv:E (1.75) BS01 COY 4.2.1.28 GO:0016829 ... Q59471 10903944
    10091 1egv:L (1.75) BS01 COY 4.2.1.28 GO:0003824 ... Q59470 10903944
    10092 1egw:A (1.5) BS01 dna ? GO:0000977 ... Q02078 10715212
    10093 1egw:A (1.5) BS02 dna ? GO:0000977 ... Q02078 10715212
    10094 1egw:B (1.5) BS01 dna ? GO:0000977 ... Q02078 10715212
    10095 1egw:B (1.5) BS02 dna ? GO:0000977 ... Q02078 10715212
    10096 1egw:B (1.5) BS03 dna ? GO:0000977 ... Q02078 10715212
    10097 1egw:C (1.5) BS01 dna ? GO:0000977 ... Q02078 10715212
    10098 1egw:C (1.5) BS02 dna ? GO:0000977 ... Q02078 10715212
    10099 1egw:C (1.5) BS03 dna ? GO:0000977 ... Q02078 10715212
    10100 1egw:D (1.5) BS01 dna ? GO:0000977 ... Q02078 10715212
    10101 1egw:D (1.5) BS02 dna ? GO:0000977 ... Q02078 10715212
    10102 1egy:A (2.35) BS01 HEM 1.14.15.35 GO:0004497 ... Q00441 10716705
    10103 1egy:A (2.35) BS02 9AP 1.14.15.35 GO:0004497 ... Q00441 10716705
    10104 1egy:A (2.35) BS03 9AP 1.14.15.35 GO:0004497 ... Q00441 10716705
    10105 1egz:A (2.3) BS01 CA 3.2.1.4 GO:0000272 ... P07103 11501995
    10106 1egz:B (2.3) BS01 CA 3.2.1.4 GO:0000272 ... P07103 11501995
    10107 1egz:C (2.3) BS01 CA 3.2.1.4 GO:0000272 ... P07103 11501995
    10108 1eh2:A (-1.00) BS01 CA ? GO:0005509 ... P42566 9721102
    10109 1eh3:A (2.0) BS01 FE 3.4.21.- GO:0005576 ... P02788 10828980
    10110 1eh3:A (2.0) BS02 CO3 3.4.21.- GO:0005576 ... P02788 10828980
    10111 1eh4:A (2.8) BS01 IC1 2.7.11.1 GO:0004672 ... P40233 10749871
    10112 1eh4:B (2.8) BS01 IC1 2.7.11.1 GO:0004672 ... P40233 10749871
    10113 1eh6:A (2.0) BS01 ZN 2.1.1.63 GO:0003677 ... P16455 10747039
    10114 1eh7:A (2.0) BS01 ZN 2.1.1.63 GO:0003677 ... P16455 10747039
    10115 1eh8:A (2.5) BS01 ZN 2.1.1.63 GO:0003677 ... P16455 10747039
    10116 1ehb:A (1.9) BS01 HEM ? GO:0020037 ... P00171 10842340
    10117 1ehe:A (1.7) BS01 HEM 1.7.1.14 GO:0004497 ... P23295 11051564
    10118 1ehf:A (1.7) BS01 HEM 1.7.1.14 GO:0004497 ... P23295 11051564
    10119 1ehg:A (1.7) BS01 HEM 1.7.1.14 GO:0004497 ... P23295 11051564
    10120 1ehi:A (2.38) BS01 MG 6.3.2.4 GO:0003824 ... Q03ZI1 10801495
    10121 1ehi:A (2.38) BS02 ADP 6.3.2.4 GO:0003824 ... Q03ZI1 10801495
    10122 1ehi:A (2.38) BS03 PHY 6.3.2.4 GO:0003824 ... Q03ZI1 10801495
    10123 1ehj:A (-1.00) BS01 HEC ? GO:0009055 ... P00137 10561607
    10124 1ehj:A (-1.00) BS02 HEC ? GO:0009055 ... P00137 10561607
    10125 1ehj:A (-1.00) BS03 HEC ? GO:0009055 ... P00137 10561607
    10126 1ehk:A (2.4) BS01 CU 7.1.1.9 GO:0004129 ... Q5SJ79 10775261
    10127 1ehk:A (2.4) BS02 HEM 7.1.1.9 GO:0004129 ... Q5SJ79 10775261
    10128 1ehk:A (2.4) BS03 HAS 7.1.1.9 GO:0004129 ... Q5SJ79 10775261
    10129 1ehk:B (2.4) BS01 CUA 7.1.1.9 GO:0004129 ... Q5SJ80 10775261
    10130 1ehl:H (2.4) BS01 dna ? N/A P01863 10835279
    10131 1ehl:L (2.4) BS01 dna ? GO:0005576 ... P01837 10835279
    10132 1ei1:A (2.3) BS01 ANP 5.6.2.2 GO:0003677 ... P0AES6 10734094
    10133 1ei1:B (2.3) BS01 ANP 5.6.2.2 GO:0003677 ... P0AES6 10734094
    10134 1ei6:A (2.1) BS01 ZN 3.11.1.2 GO:0016787 ... Q51782 N/A
    10135 1ei6:A (2.1) BS02 ZN 3.11.1.2 GO:0016787 ... Q51782 N/A
    10136 1ei6:A (2.1) BS03 PPF 3.11.1.2 GO:0016787 ... Q51782 N/A
    10137 1ei6:B (2.1) BS01 ZN 3.11.1.2 GO:0016787 ... Q51782 N/A
    10138 1ei6:B (2.1) BS02 ZN 3.11.1.2 GO:0016787 ... Q51782 N/A
    10139 1ei6:C (2.1) BS01 ZN 3.11.1.2 GO:0016787 ... Q51782 N/A
    10140 1ei6:C (2.1) BS02 ZN 3.11.1.2 GO:0016787 ... Q51782 N/A
    10141 1ei6:C (2.1) BS03 PPF 3.11.1.2 GO:0016787 ... Q51782 N/A
    10142 1ei6:D (2.1) BS01 ZN 3.11.1.2 GO:0016787 ... Q51782 N/A
    10143 1ei6:D (2.1) BS02 ZN 3.11.1.2 GO:0016787 ... Q51782 N/A
    10144 1ei6:D (2.1) BS03 PPF 3.11.1.2 GO:0016787 ... Q51782 N/A
    10145 1eii:A (-1.00) BS01 RTL ? GO:0005504 ... P06768 10884357
    10146 1eil:A (2.0) BS01 FE 1.13.11.39 GO:0003824 ... P17297 11293547
    10147 1eio:A (-1.00) BS01 GCH ? GO:0005504 ... P10289 10806391
    10148 1eiq:A (2.0) BS01 FE 1.13.11.39 GO:0003824 ... P17297 11293547
    10149 1eir:A (2.0) BS01 FE 1.13.11.39 GO:0003824 ... P17297 11293547
    10150 1eir:A (2.0) BS02 BPY 1.13.11.39 GO:0003824 ... P17297 11293547
    10151 1eix:A (2.5) BS01 BMQ 4.1.1.23 GO:0004590 ... P08244 10757968 MOAD: Ki=8.8pM
    PDBbind: -logKd/Ki=11.06, Ki=8.8pM
    10152 1eix:A (2.5) BS02 BMQ 4.1.1.23 GO:0004590 ... P08244 10757968 MOAD: Ki=8.8pM
    PDBbind: -logKd/Ki=11.06, Ki=8.8pM
    10153 1eix:B (2.5) BS01 BMQ 4.1.1.23 GO:0004590 ... P08244 10757968 MOAD: Ki=8.8pM
    PDBbind: -logKd/Ki=11.06, Ki=8.8pM
    10154 1eix:B (2.5) BS02 BMQ 4.1.1.23 GO:0004590 ... P08244 10757968 MOAD: Ki=8.8pM
    PDBbind: -logKd/Ki=11.06, Ki=8.8pM
    10155 1eix:C (2.5) BS01 BMQ 4.1.1.23 GO:0004590 ... P08244 10757968 MOAD: Ki=8.8pM
    10156 1eix:C (2.5) BS02 BMQ 4.1.1.23 GO:0004590 ... P08244 10757968 MOAD: Ki=8.8pM
    10157 1eix:D (2.5) BS01 BMQ 4.1.1.23 GO:0004590 ... P08244 10757968 MOAD: Ki=8.8pM
    10158 1eix:D (2.5) BS02 BMQ 4.1.1.23 GO:0004590 ... P08244 10757968 MOAD: Ki=8.8pM
    10159 1eiy:A (3.3) BS01 rna 6.1.1.20 GO:0000049 ... Q5SGX2 9016717
    10160 1eiy:B (3.3) BS01 rna 6.1.1.20 GO:0000049 ... Q5SGX1 9016717
    10161 1eiz:A (1.7) BS01 SAM 2.1.1.166 GO:0001510 ... P0C0R7 10983982
    10162 1ej0:A (1.5) BS01 SAM 2.1.1.166 GO:0001510 ... P0C0R7 10983982
    10163 1ej1:A (2.2) BS01 M7G ? GO:0003723 ... P63073 9200613
    10164 1ej1:B (2.2) BS01 M7G ? GO:0003723 ... P63073 9200613
    10165 1ej2:A (1.9) BS01 SO4 2.7.7.1 GO:0000309 ... O26253 11063748
    10166 1ej2:A (1.9) BS02 NAD 2.7.7.1 GO:0000309 ... O26253 11063748
    10167 1ej3:A (2.3) BS01 CZH ? GO:0005509 ... P02592 10830969
    10168 1ej3:B (2.3) BS01 CZH ? GO:0005509 ... P02592 10830969
    10169 1ej4:A (2.25) BS01 peptide ? GO:0003723 ... P63073 10394359
    10170 1ej4:A (2.25) BS02 M7G ? GO:0003723 ... P63073 10394359
    10171 1ej6:C (3.6) BS01 ZN 3.6.4.13 GO:0003724 ... P15024 10801118
    10172 1ej7:L (2.45) BS01 PO4 4.1.1.39 GO:0000287 ... P00876 10801357
    10173 1ej7:L (2.45) BS02 PO4 4.1.1.39 GO:0000287 ... P00876 10801357
    10174 1ej8:A (1.55) BS01 CA ? GO:0006801 ... P40202 10736160
    10175 1ej9:A (2.6) BS01 dna 5.6.2.1 GO:0003677 ... P11387 10841763
    10176 1ej9:A (2.6) BS02 dna 5.6.2.1 GO:0003677 ... P11387 10841763
    10177 1eja:A (2.7) BS01 NA 3.4.21.4 GO:0004252 ... P00761 10771427
    10178 1ejb:A (1.85) BS01 INJ 2.5.1.78 GO:0000906 ... P50861 10860731
    10179 1ejb:A (1.85) BS02 INJ 2.5.1.78 GO:0000906 ... P50861 10860731
    10180 1ejb:B (1.85) BS01 INJ 2.5.1.78 GO:0000906 ... P50861 10860731
    10181 1ejb:B (1.85) BS02 INJ 2.5.1.78 GO:0000906 ... P50861 10860731
    10182 1ejb:C (1.85) BS01 INJ 2.5.1.78 GO:0000906 ... P50861 10860731
    10183 1ejb:C (1.85) BS02 INJ 2.5.1.78 GO:0000906 ... P50861 10860731
    10184 1ejb:D (1.85) BS01 INJ 2.5.1.78 GO:0000906 ... P50861 10860731
    10185 1ejb:D (1.85) BS02 INJ 2.5.1.78 GO:0000906 ... P50861 10860731
    10186 1ejb:E (1.85) BS01 INJ 2.5.1.78 GO:0000906 ... P50861 10860731
    10187 1ejb:E (1.85) BS02 INJ 2.5.1.78 GO:0000906 ... P50861 10860731
    10188 1eje:A (2.2) BS01 FMN ? GO:0010181 ... O26255 11017201
    10189 1ejh:A (2.2) BS01 peptide ? GO:0003723 ... P63073 10394359
    10190 1ejh:A (2.2) BS02 M7G ? GO:0003723 ... P63073 10394359
    10191 1ejh:B (2.2) BS01 peptide ? GO:0003723 ... P63073 10394359
    10192 1ejh:B (2.2) BS02 M7G ? GO:0003723 ... P63073 10394359
    10193 1ejh:C (2.2) BS01 peptide ? GO:0003723 ... P63073 10394359
    10194 1ejh:C (2.2) BS02 M7G ? GO:0003723 ... P63073 10394359
    10195 1ejh:D (2.2) BS01 peptide ? GO:0003723 ... P63073 10394359
    10196 1ejh:D (2.2) BS02 M7G ? GO:0003723 ... P63073 10394359
    10197 1eji:A (2.9) BS01 PLG 2.1.2.1 GO:0000900 ... P50431 11063567
    10198 1eji:A (2.9) BS02 THF 2.1.2.1 GO:0000900 ... P50431 11063567
    10199 1eji:A (2.9) BS03 PLG 2.1.2.1 GO:0000900 ... P50431 11063567
    10200 1eji:A (2.9) BS04 THF 2.1.2.1 GO:0000900 ... P50431 11063567

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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