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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    815601 8ssq:D (3.12) BS06 ZN ? N/A P49711 37439339
    815602 8ssq:D (3.12) BS07 ZN ? N/A P49711 37439339
    815603 8ssq:D (3.12) BS08 ZN ? N/A P49711 37439339
    815604 8ssq:D (3.12) BS09 ZN ? N/A P49711 37439339
    815605 8ssq:D (3.12) BS10 ZN ? N/A P49711 37439339
    815606 8ssr:A (3.14) BS01 dna ? N/A P49711 37439339
    815607 8ssr:A (3.14) BS02 dna ? N/A P49711 37439339
    815608 8ssr:A (3.14) BS03 ZN ? N/A P49711 37439339
    815609 8ssr:A (3.14) BS04 ZN ? N/A P49711 37439339
    815610 8ssr:A (3.14) BS05 ZN ? N/A P49711 37439339
    815611 8ssr:A (3.14) BS06 ZN ? N/A P49711 37439339
    815612 8ssr:A (3.14) BS07 ZN ? N/A P49711 37439339
    815613 8ssr:A (3.14) BS08 ZN ? N/A P49711 37439339
    815614 8ssr:A (3.14) BS09 ZN ? N/A P49711 37439339
    815615 8ssr:A (3.14) BS10 ZN ? N/A P49711 37439339
    815616 8ssr:A (3.14) BS11 ZN ? N/A P49711 37439339
    815617 8ssr:D (3.14) BS01 dna ? N/A P49711 37439339
    815618 8ssr:D (3.14) BS02 dna ? N/A P49711 37439339
    815619 8ssr:D (3.14) BS03 ZN ? N/A P49711 37439339
    815620 8ssr:D (3.14) BS04 ZN ? N/A P49711 37439339
    815621 8ssr:D (3.14) BS05 ZN ? N/A P49711 37439339
    815622 8ssr:D (3.14) BS06 ZN ? N/A P49711 37439339
    815623 8ssr:D (3.14) BS07 ZN ? N/A P49711 37439339
    815624 8ssr:D (3.14) BS08 ZN ? N/A P49711 37439339
    815625 8ssr:D (3.14) BS09 ZN ? N/A P49711 37439339
    815626 8ssr:D (3.14) BS10 ZN ? N/A P49711 37439339
    815627 8sss:A (2.3) BS01 dna ? N/A P49711 37439339
    815628 8sss:A (2.3) BS02 dna ? N/A P49711 37439339
    815629 8sss:A (2.3) BS03 ZN ? N/A P49711 37439339
    815630 8sss:A (2.3) BS04 ZN ? N/A P49711 37439339
    815631 8sss:A (2.3) BS05 ZN ? N/A P49711 37439339
    815632 8sss:A (2.3) BS06 ZN ? N/A P49711 37439339
    815633 8sss:A (2.3) BS07 ZN ? N/A P49711 37439339
    815634 8sss:A (2.3) BS08 ZN ? N/A P49711 37439339
    815635 8sss:A (2.3) BS09 ZN ? N/A P49711 37439339
    815636 8sss:D (2.3) BS01 dna ? N/A P49711 37439339
    815637 8sss:D (2.3) BS02 dna ? N/A P49711 37439339
    815638 8sss:D (2.3) BS03 ZN ? N/A P49711 37439339
    815639 8sss:D (2.3) BS04 ZN ? N/A P49711 37439339
    815640 8sss:D (2.3) BS05 ZN ? N/A P49711 37439339
    815641 8sss:D (2.3) BS06 ZN ? N/A P49711 37439339
    815642 8sss:D (2.3) BS07 ZN ? N/A P49711 37439339
    815643 8sss:D (2.3) BS08 ZN ? N/A P49711 37439339
    815644 8sss:D (2.3) BS09 ZN ? N/A P49711 37439339
    815645 8sst:A (2.19) BS01 dna ? N/A P49711 37439339
    815646 8sst:A (2.19) BS02 dna ? N/A P49711 37439339
    815647 8sst:A (2.19) BS03 ZN ? N/A P49711 37439339
    815648 8sst:A (2.19) BS04 ZN ? N/A P49711 37439339
    815649 8sst:A (2.19) BS05 ZN ? N/A P49711 37439339
    815650 8sst:A (2.19) BS06 ZN ? N/A P49711 37439339
    815651 8sst:A (2.19) BS07 ZN ? N/A P49711 37439339
    815652 8sst:A (2.19) BS08 ZN ? N/A P49711 37439339
    815653 8sst:A (2.19) BS09 ZN ? N/A P49711 37439339
    815654 8sst:D (2.19) BS01 dna ? N/A P49711 37439339
    815655 8sst:D (2.19) BS02 dna ? N/A P49711 37439339
    815656 8sst:D (2.19) BS03 ZN ? N/A P49711 37439339
    815657 8sst:D (2.19) BS04 ZN ? N/A P49711 37439339
    815658 8sst:D (2.19) BS05 ZN ? N/A P49711 37439339
    815659 8sst:D (2.19) BS06 ZN ? N/A P49711 37439339
    815660 8sst:D (2.19) BS07 ZN ? N/A P49711 37439339
    815661 8sst:D (2.19) BS08 ZN ? N/A P49711 37439339
    815662 8sst:D (2.19) BS09 ZN ? N/A P49711 37439339
    815663 8ssu:A (2.89) BS01 dna ? N/A P49711
    Q86U70    		 37439339
    815664 8ssu:A (2.89) BS02 dna ? N/A P49711
    Q86U70    		 37439339
    815665 8ssu:A (2.89) BS03 ZN ? N/A P49711
    Q86U70    		 37439339
    815666 8ssu:A (2.89) BS04 ZN ? N/A P49711
    Q86U70    		 37439339
    815667 8ssu:A (2.89) BS05 ZN ? N/A P49711
    Q86U70    		 37439339
    815668 8ssu:A (2.89) BS06 ZN ? N/A P49711
    Q86U70    		 37439339
    815669 8ssu:A (2.89) BS07 ZN ? N/A P49711
    Q86U70    		 37439339
    815670 8ssu:A (2.89) BS08 ZN ? N/A P49711
    Q86U70    		 37439339
    815671 8ssu:A (2.89) BS09 ZN ? N/A P49711
    Q86U70    		 37439339
    815672 8ssu:A (2.89) BS10 ZN ? N/A P49711
    Q86U70    		 37439339
    815673 8ssw:A (2.4) BS01 rna 3.6.4.13 N/A O00571 N/A
    815674 8ssw:A (2.4) BS02 rna 3.6.4.13 N/A O00571 N/A
    815675 8ssw:A (2.4) BS03 ADP 3.6.4.13 N/A O00571 N/A
    815676 8ssw:B (2.4) BS01 rna 3.6.4.13 N/A O00571 N/A
    815677 8ssw:B (2.4) BS02 rna 3.6.4.13 N/A O00571 N/A
    815678 8ssw:B (2.4) BS03 ADP 3.6.4.13 N/A O00571 N/A
    815679 8ssy:A (1.8) BS01 DSN 2.1.2.1 GO:0004372 ... Q5SI56 37532884
    815680 8ssy:B (1.8) BS01 DSN 2.1.2.1 GO:0004372 ... Q5SI56 37532884
    815681 8ssz:A (2.64) BS01 ACH ? GO:0004888 ... P43681 38454578
    815682 8ssz:A (2.64) BS02 CA ? GO:0004888 ... P43681 38454578
    815683 8ssz:B (2.64) BS01 ACH ? GO:0001666 ... P17787 38454578
    815684 8ssz:D (2.64) BS01 ACH ? GO:0004888 ... P43681 38454578
    815685 8ssz:D (2.64) BS02 CA ? GO:0004888 ... P43681 38454578
    815686 8st0:A (2.4) BS01 ACH ? GO:0004888 ... P43681 38454578
    815687 8st0:B (2.4) BS01 ACH ? GO:0001666 ... P17787 38454578
    815688 8st0:D (2.4) BS01 ACH ? GO:0004888 ... P43681 38454578
    815689 8st1:A (3.41) BS01 ACH ? GO:0004888 ... P43681 38454578
    815690 8st1:A (3.41) BS02 CA ? GO:0004888 ... P43681 38454578
    815691 8st1:B (3.41) BS01 ACH ? GO:0004888 ... P43681 38454578
    815692 8st1:D (3.41) BS01 ACH ? GO:0004888 ... P43681 38454578
    815693 8st1:D (3.41) BS02 CA ? GO:0004888 ... P43681 38454578
    815694 8st2:A (2.94) BS01 ACH ? GO:0004888 ... P43681 38454578
    815695 8st2:B (2.94) BS01 ACH ? GO:0004888 ... P43681 38454578
    815696 8st2:C (2.94) BS01 ACH ? GO:0004888 ... P17787 38454578
    815697 8st2:D (2.94) BS01 ACH ? GO:0004888 ... P43681 38454578
    815698 8st2:E (2.94) BS01 ACH ? GO:0004888 ... P17787 38454578
    815699 8st3:A (2.93) BS01 ACH ? GO:0004888 ... P43681 38454578
    815700 8st3:A (2.93) BS02 CA ? GO:0004888 ... P43681 38454578
    815701 8st3:B (2.93) BS01 ACH ? GO:0004888 ... P17787 38454578
    815702 8st3:D (2.93) BS01 ACH ? GO:0004888 ... P43681 38454578
    815703 8st3:D (2.93) BS02 CA ? GO:0004888 ... P43681 38454578
    815704 8st3:E (2.93) BS01 ACH ? GO:0004888 ... P17787 38454578
    815705 8st4:A (2.35) BS01 ACH ? GO:0004888 ... P43681 38454578
    815706 8st4:B (2.35) BS01 ACH ? GO:0004888 ... P17787 38454578
    815707 8st4:D (2.35) BS01 ACH ? GO:0004888 ... P43681 38454578
    815708 8st4:E (2.35) BS01 ACH ? GO:0004888 ... P17787 38454578
    815709 8st6:A (1.45) BS01 USR ? N/A A8AWU7 N/A
    815710 8st7:A (1.44) BS01 AYE ? GO:0004842 ... A0A2V2RSR1 38091999
    815711 8st7:B (1.44) BS01 AYE ? N/A P0CG48 38091999
    815712 8st7:C (1.44) BS01 AYE ? GO:0004842 ... A0A2V2RSR1 38091999
    815713 8st7:D (1.44) BS01 AYE ? N/A P0CG48 38091999
    815714 8st8:A (1.75) BS01 AYE 2.3.2.26 GO:0004842 ... Q8ZNR3 38091999
    815715 8st9:A (2.5) BS01 AYE 2.3.2.26 GO:0004842 ... A0A0H3JDV8 38091999
    815716 8st9:C (2.5) BS01 AYE 2.3.2.26 GO:0004842 ... A0A0H3JDV8 38091999
    815717 8std:A (2.65) BS01 MG 2.5.1.143 GO:0005886 ... F9UST0 37831946
    815718 8std:A (2.65) BS02 DND 2.5.1.143 GO:0005886 ... F9UST0 37831946
    815719 8std:B (2.65) BS01 MG 2.5.1.143 GO:0005886 ... F9UST0 37831946
    815720 8std:B (2.65) BS02 DND 2.5.1.143 GO:0005886 ... F9UST0 37831946
    815721 8std:C (2.65) BS01 DND 2.5.1.143 GO:0005886 ... F9UST0 37831946
    815722 8std:D (2.65) BS01 MG 2.5.1.143 GO:0005886 ... F9UST0 37831946
    815723 8std:D (2.65) BS02 DND 2.5.1.143 GO:0005886 ... F9UST0 37831946
    815724 8std:E (2.65) BS01 DND 2.5.1.143 GO:0005886 ... F9UST0 37831946
    815725 8std:F (2.65) BS01 DND 2.5.1.143 GO:0005886 ... F9UST0 37831946
    815726 8ste:A (3.34) BS01 FUN ? GO:0006811 ... P55011 36306358
    815727 8ste:B (3.34) BS01 FUN ? GO:0006811 ... P55011 36306358
    815728 8stg:A (3.79) BS01 WCJ 2.7.10.1 GO:0004672 ... P21802 37270847
    815729 8stg:B (3.79) BS01 WCJ 2.7.10.1 GO:0004672 ... P21802 37270847
    815730 8sth:A (1.97) BS01 WWU ? GO:0002218 ... Q86WV6 37486969
    815731 8sti:A (1.72) BS01 WX8 ? GO:0002218 ... Q86WV6 37486969
    815732 8stm:A (2.0) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37556505
    815733 8stm:B (2.0) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37556505
    815734 8stm:C (2.0) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37556505
    815735 8stm:D (2.0) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37556505
    815736 8stn:A (2.03) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37556505
    815737 8stn:B (2.03) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37556505
    815738 8stp:A (3.09) BS01 29T 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    815739 8stq:A (2.955) BS01 3LQ 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    815740 8stq:A (2.955) BS02 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    815741 8stq:A (2.955) BS03 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    815742 8str:A (2.77) BS01 7N1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    815743 8sts:A (3.02) BS01 7N1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    815744 8sts:A (3.02) BS02 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    815745 8sts:C (3.02) BS01 7N1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    815746 8sts:C (3.02) BS02 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    815747 8stt:A (2.62) BS01 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    815748 8stt:A (2.62) BS02 29T 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    815749 8stt:C (2.62) BS01 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    815750 8stt:C (2.62) BS02 29T 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    815751 8stu:A (2.76) BS01 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    815752 8stu:A (2.76) BS02 H9Y 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    815753 8stv:A (2.78) BS01 3LQ 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    815754 8stv:C (2.78) BS01 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    815755 8stv:C (2.78) BS02 3LQ 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37861472
    815756 8stw:A (2.4) BS01 PLP 4.2.1.22 GO:0004122 ... P35520 37949228
    815757 8stw:A (2.4) BS02 HEM 4.2.1.22 GO:0004122 ... P35520 37949228
    815758 8stw:B (2.4) BS01 PLP 4.2.1.22 GO:0004122 ... P35520 37949228
    815759 8stw:B (2.4) BS02 HEM 4.2.1.22 GO:0004122 ... P35520 37949228
    815760 8stw:C (2.4) BS01 PLP 4.2.1.22 GO:0004122 ... P35520 37949228
    815761 8stw:C (2.4) BS02 HEM 4.2.1.22 GO:0004122 ... P35520 37949228
    815762 8stw:D (2.4) BS01 PLP 4.2.1.22 GO:0004122 ... P35520 37949228
    815763 8stw:D (2.4) BS02 HEM 4.2.1.22 GO:0004122 ... P35520 37949228
    815764 8stw:E (2.4) BS01 PLP 4.2.1.22 GO:0004122 ... P35520 37949228
    815765 8stw:E (2.4) BS02 HEM 4.2.1.22 GO:0004122 ... P35520 37949228
    815766 8stw:F (2.4) BS01 PLP 4.2.1.22 GO:0004122 ... P35520 37949228
    815767 8stw:F (2.4) BS02 HEM 4.2.1.22 GO:0004122 ... P35520 37949228
    815768 8sty:A (1.9) BS01 WGE 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 37561993
    815769 8stz:A (1.85) BS01 WGI 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 37561993
    815770 8su1:A (1.37) BS01 MG 4.2.3.37 GO:0016829 ... Q9K499 37449555
    815771 8su1:A (1.37) BS02 210 4.2.3.37 GO:0016829 ... Q9K499 37449555
    815772 8su2:A (1.33) BS01 RIS 4.2.3.37 GO:0016829 ... Q9K499 37449555
    815773 8su2:A (1.33) BS02 MG 4.2.3.37 GO:0016829 ... Q9K499 37449555
    815774 8su3:A (1.29) BS01 MG 4.2.3.37 GO:0016829 ... Q9K499 37449555
    815775 8su3:A (1.29) BS02 POP 4.2.3.37 GO:0016829 ... Q9K499 37449555
    815776 8su3:A (1.29) BS03 BTM 4.2.3.37 GO:0016829 ... Q9K499 37449555
    815777 8su4:A (1.43) BS01 MG 4.2.3.37 GO:0016829 ... Q9K499 37449555
    815778 8su4:A (1.43) BS02 POP 4.2.3.37 GO:0016829 ... Q9K499 37449555
    815779 8su4:A (1.43) BS03 BTM 4.2.3.37 GO:0016829 ... Q9K499 37449555
    815780 8su5:A (1.48) BS01 BTM 4.2.3.37 GO:0016829 ... Q9K499 37449555
    815781 8su5:A (1.48) BS02 MG 4.2.3.37 GO:0016829 ... Q9K499 37449555
    815782 8su5:A (1.48) BS03 POP 4.2.3.37 GO:0016829 ... Q9K499 37449555
    815783 8su6:A (1.5) BS01 PLP 2.6.1.87 GO:0000271 ... A0A0H3FL22 N/A
    815784 8su6:B (1.5) BS01 PLP 2.6.1.87 GO:0000271 ... A0A0H3FL22 N/A
    815785 8su8:A (2.01) BS01 XE2 ? GO:0005856 ... O00522 37974623
    815786 8su8:B (2.01) BS01 MG 3.6.5.2 GO:0003924 ... P61224 37974623
    815787 8su8:B (2.01) BS02 GNP 3.6.5.2 GO:0003924 ... P61224 37974623
    815788 8suc:A (1.4) BS01 MG 2.3.2.27 N/A Q19818 N/A
    815789 8sud:A (2.1) BS01 peptide ? GO:0005737 ... P52293 38108201
    815790 8suf:C (4.0) BS01 MAN ? N/A Q9N5Z3 N/A
    815791 8sui:B (2.0) BS01 SER 2.1.2.1 GO:0004372 ... Q5SI56 37532884
    815792 8sun:A (3.12) BS01 CA ? GO:0002407 ... Q6P9J9 37573365
    815793 8sun:B (3.12) BS01 CA ? GO:0002407 ... Q6P9J9 37573365
    815794 8sun:B (3.12) BS02 CA ? GO:0002407 ... Q6P9J9 37573365
    815795 8sun:B (3.12) BS03 JRF ? GO:0002407 ... Q6P9J9 37573365
    815796 8sur:A (3.1) BS01 CA ? GO:0002407 ... Q6P9J9 37573365
    815797 8sur:A (3.1) BS02 CA ? GO:0002407 ... Q6P9J9 37573365
    815798 8sur:B (3.1) BS01 CA ? GO:0002407 ... Q6P9J9 37573365
    815799 8sur:B (3.1) BS02 CA ? GO:0002407 ... Q6P9J9 37573365
    815800 8sur:B (3.1) BS03 CA ? GO:0002407 ... Q6P9J9 37573365
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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