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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    815001 8sr2:E (2.36) BS02 CU 1.14.18.3 N/A G1UBD1 N/A
    815002 8sr2:G (2.36) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 N/A
    815003 8sr2:G (2.36) BS02 CU 1.14.13.25 GO:0004497 ... Q603F1 N/A
    815004 8sr2:G (2.36) BS03 HXG 1.14.13.25 GO:0004497 ... Q603F1 N/A
    815005 8sr2:G (2.36) BS04 HXG 1.14.13.25 GO:0004497 ... Q603F1 N/A
    815006 8sr2:I (2.36) BS01 CU 1.14.18.3 N/A G1UBD1 N/A
    815007 8sr2:I (2.36) BS02 CU 1.14.18.3 N/A G1UBD1 N/A
    815008 8sr2:K (2.36) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 N/A
    815009 8sr2:K (2.36) BS02 CU 1.14.13.25 GO:0004497 ... Q603F1 N/A
    815010 8sr2:K (2.36) BS03 HXG 1.14.13.25 GO:0004497 ... Q603F1 N/A
    815011 8sr2:K (2.36) BS04 HXG 1.14.13.25 GO:0004497 ... Q603F1 N/A
    815012 8sr4:A (3.12) BS01 CU 1.14.18.3 GO:0004497 ... G1UBD1 38187819
    815013 8sr4:A (3.12) BS02 CU 1.14.18.3 GO:0004497 ... G1UBD1 38187819
    815014 8sr4:C (3.12) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 38187819
    815015 8sr4:E (3.12) BS01 CU 1.14.18.3 GO:0004497 ... G1UBD1 38187819
    815016 8sr4:E (3.12) BS02 CU 1.14.18.3 GO:0004497 ... G1UBD1 38187819
    815017 8sr4:G (3.12) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 38187819
    815018 8sr4:I (3.12) BS01 CU 1.14.18.3 GO:0004497 ... G1UBD1 38187819
    815019 8sr4:I (3.12) BS02 CU 1.14.18.3 GO:0004497 ... G1UBD1 38187819
    815020 8sr4:K (3.12) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 38187819
    815021 8sr5:A (3.22) BS01 CU 1.14.18.3 N/A G1UBD1 38187819
    815022 8sr5:A (3.22) BS02 CU 1.14.18.3 N/A G1UBD1 38187819
    815023 8sr5:E (3.22) BS01 CU 1.14.18.3 N/A G1UBD1 38187819
    815024 8sr5:E (3.22) BS02 CU 1.14.18.3 N/A G1UBD1 38187819
    815025 8sr5:I (3.22) BS01 CU 1.14.18.3 N/A G1UBD1 38187819
    815026 8sr5:I (3.22) BS02 CU 1.14.18.3 N/A G1UBD1 38187819
    815027 8sr6:A (2.22) BS01 peptide ? N/A Q5ZUS4 37795993
    815028 8sr6:A (2.22) BS02 SAH ? N/A Q5ZUS4 37795993
    815029 8sr7:A (1.97) BS01 RP5 ? GO:0005216 ... F2UB89 38773335
    815030 8sr7:A (1.97) BS02 AMP ? GO:0005216 ... F2UB89 38773335
    815031 8sr7:A (1.97) BS03 MG ? GO:0005216 ... F2UB89 38773335
    815032 8sr7:A (1.97) BS04 MG ? GO:0005216 ... F2UB89 38773335
    815033 8sr7:A (1.97) BS05 MG ? GO:0005216 ... F2UB89 38773335
    815034 8sr7:A (1.97) BS06 CLR ? GO:0005216 ... F2UB89 38773335
    815035 8sr7:A (1.97) BS07 CLR ? GO:0005216 ... F2UB89 38773335
    815036 8sr7:A (1.97) BS08 CLR ? GO:0005216 ... F2UB89 38773335
    815037 8sr7:A (1.97) BS09 CLR ? GO:0005216 ... F2UB89 38773335
    815038 8sr7:B (1.97) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    815039 8sr7:B (1.97) BS02 RP5 ? GO:0005216 ... F2UB89 38773335
    815040 8sr7:B (1.97) BS03 AMP ? GO:0005216 ... F2UB89 38773335
    815041 8sr7:B (1.97) BS04 MG ? GO:0005216 ... F2UB89 38773335
    815042 8sr7:B (1.97) BS05 MG ? GO:0005216 ... F2UB89 38773335
    815043 8sr7:B (1.97) BS06 MG ? GO:0005216 ... F2UB89 38773335
    815044 8sr7:B (1.97) BS07 CLR ? GO:0005216 ... F2UB89 38773335
    815045 8sr7:B (1.97) BS08 CLR ? GO:0005216 ... F2UB89 38773335
    815046 8sr7:B (1.97) BS09 CLR ? GO:0005216 ... F2UB89 38773335
    815047 8sr7:C (1.97) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    815048 8sr7:C (1.97) BS02 RP5 ? GO:0005216 ... F2UB89 38773335
    815049 8sr7:C (1.97) BS03 AMP ? GO:0005216 ... F2UB89 38773335
    815050 8sr7:C (1.97) BS04 MG ? GO:0005216 ... F2UB89 38773335
    815051 8sr7:C (1.97) BS05 MG ? GO:0005216 ... F2UB89 38773335
    815052 8sr7:C (1.97) BS06 MG ? GO:0005216 ... F2UB89 38773335
    815053 8sr7:C (1.97) BS07 CLR ? GO:0005216 ... F2UB89 38773335
    815054 8sr7:C (1.97) BS08 CLR ? GO:0005216 ... F2UB89 38773335
    815055 8sr7:C (1.97) BS09 CLR ? GO:0005216 ... F2UB89 38773335
    815056 8sr7:D (1.97) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    815057 8sr7:D (1.97) BS02 CLR ? GO:0005216 ... F2UB89 38773335
    815058 8sr7:D (1.97) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    815059 8sr7:D (1.97) BS04 RP5 ? GO:0005216 ... F2UB89 38773335
    815060 8sr7:D (1.97) BS05 AMP ? GO:0005216 ... F2UB89 38773335
    815061 8sr7:D (1.97) BS06 MG ? GO:0005216 ... F2UB89 38773335
    815062 8sr7:D (1.97) BS07 MG ? GO:0005216 ... F2UB89 38773335
    815063 8sr7:D (1.97) BS08 MG ? GO:0005216 ... F2UB89 38773335
    815064 8sr7:D (1.97) BS09 CLR ? GO:0005216 ... F2UB89 38773335
    815065 8sr8:A (2.77) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    815066 8sr8:A (2.77) BS02 CLR ? GO:0005216 ... F2UB89 38773335
    815067 8sr8:A (2.77) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    815068 8sr8:A (2.77) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    815069 8sr8:B (2.77) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    815070 8sr8:B (2.77) BS02 CLR ? GO:0005216 ... F2UB89 38773335
    815071 8sr8:B (2.77) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    815072 8sr8:B (2.77) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    815073 8sr8:C (2.77) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    815074 8sr8:C (2.77) BS02 CLR ? GO:0005216 ... F2UB89 38773335
    815075 8sr8:C (2.77) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    815076 8sr8:C (2.77) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    815077 8sr8:D (2.77) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    815078 8sr8:D (2.77) BS02 CLR ? GO:0005216 ... F2UB89 38773335
    815079 8sr8:D (2.77) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    815080 8sr8:D (2.77) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    815081 8sr9:A (3.05) BS01 MG ? GO:0005216 ... F2UB89 38773335
    815082 8sr9:A (3.05) BS02 MG ? GO:0005216 ... F2UB89 38773335
    815083 8sr9:A (3.05) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    815084 8sr9:A (3.05) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    815085 8sr9:A (3.05) BS05 CLR ? GO:0005216 ... F2UB89 38773335
    815086 8sr9:A (3.05) BS06 CLR ? GO:0005216 ... F2UB89 38773335
    815087 8sr9:B (3.05) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    815088 8sr9:B (3.05) BS02 MG ? GO:0005216 ... F2UB89 38773335
    815089 8sr9:B (3.05) BS03 MG ? GO:0005216 ... F2UB89 38773335
    815090 8sr9:B (3.05) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    815091 8sr9:B (3.05) BS05 CLR ? GO:0005216 ... F2UB89 38773335
    815092 8sr9:B (3.05) BS06 CLR ? GO:0005216 ... F2UB89 38773335
    815093 8sr9:C (3.05) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    815094 8sr9:C (3.05) BS02 MG ? GO:0005216 ... F2UB89 38773335
    815095 8sr9:C (3.05) BS03 MG ? GO:0005216 ... F2UB89 38773335
    815096 8sr9:C (3.05) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    815097 8sr9:C (3.05) BS05 CLR ? GO:0005216 ... F2UB89 38773335
    815098 8sr9:C (3.05) BS06 CLR ? GO:0005216 ... F2UB89 38773335
    815099 8sr9:D (3.05) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    815100 8sr9:D (3.05) BS02 CLR ? GO:0005216 ... F2UB89 38773335
    815101 8sr9:D (3.05) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    815102 8sr9:D (3.05) BS04 MG ? GO:0005216 ... F2UB89 38773335
    815103 8sr9:D (3.05) BS05 MG ? GO:0005216 ... F2UB89 38773335
    815104 8sr9:D (3.05) BS06 CLR ? GO:0005216 ... F2UB89 38773335
    815105 8sra:A (2.93) BS01 CA ? GO:0005216 ... F2UB89 38773335
    815106 8sra:A (2.93) BS02 CA ? GO:0005216 ... F2UB89 38773335
    815107 8sra:A (2.93) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    815108 8sra:A (2.93) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    815109 8sra:A (2.93) BS05 CLR ? GO:0005216 ... F2UB89 38773335
    815110 8sra:A (2.93) BS06 CLR ? GO:0005216 ... F2UB89 38773335
    815111 8sra:B (2.93) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    815112 8sra:B (2.93) BS02 CA ? GO:0005216 ... F2UB89 38773335
    815113 8sra:B (2.93) BS03 CA ? GO:0005216 ... F2UB89 38773335
    815114 8sra:B (2.93) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    815115 8sra:B (2.93) BS05 CLR ? GO:0005216 ... F2UB89 38773335
    815116 8sra:B (2.93) BS06 CLR ? GO:0005216 ... F2UB89 38773335
    815117 8sra:C (2.93) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    815118 8sra:C (2.93) BS02 CA ? GO:0005216 ... F2UB89 38773335
    815119 8sra:C (2.93) BS03 CA ? GO:0005216 ... F2UB89 38773335
    815120 8sra:C (2.93) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    815121 8sra:C (2.93) BS05 CLR ? GO:0005216 ... F2UB89 38773335
    815122 8sra:C (2.93) BS06 CLR ? GO:0005216 ... F2UB89 38773335
    815123 8sra:D (2.93) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    815124 8sra:D (2.93) BS02 CLR ? GO:0005216 ... F2UB89 38773335
    815125 8sra:D (2.93) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    815126 8sra:D (2.93) BS04 CA ? GO:0005216 ... F2UB89 38773335
    815127 8sra:D (2.93) BS05 CA ? GO:0005216 ... F2UB89 38773335
    815128 8sra:D (2.93) BS06 CLR ? GO:0005216 ... F2UB89 38773335
    815129 8srb:A (2.82) BS01 APR ? GO:0005216 ... F2UB89 38773335
    815130 8srb:A (2.82) BS02 CLR ? GO:0005216 ... F2UB89 38773335
    815131 8srb:A (2.82) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    815132 8srb:A (2.82) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    815133 8srb:A (2.82) BS05 CLR ? GO:0005216 ... F2UB89 38773335
    815134 8srb:B (2.82) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    815135 8srb:B (2.82) BS02 APR ? GO:0005216 ... F2UB89 38773335
    815136 8srb:B (2.82) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    815137 8srb:B (2.82) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    815138 8srb:B (2.82) BS05 CLR ? GO:0005216 ... F2UB89 38773335
    815139 8srb:C (2.82) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    815140 8srb:C (2.82) BS02 APR ? GO:0005216 ... F2UB89 38773335
    815141 8srb:C (2.82) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    815142 8srb:C (2.82) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    815143 8srb:C (2.82) BS05 CLR ? GO:0005216 ... F2UB89 38773335
    815144 8srb:D (2.82) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    815145 8srb:D (2.82) BS02 CLR ? GO:0005216 ... F2UB89 38773335
    815146 8srb:D (2.82) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    815147 8srb:D (2.82) BS04 APR ? GO:0005216 ... F2UB89 38773335
    815148 8srb:D (2.82) BS05 CLR ? GO:0005216 ... F2UB89 38773335
    815149 8src:A (2.92) BS01 APR ? GO:0005216 ... F2UB89 38773335
    815150 8src:A (2.92) BS02 CA ? GO:0005216 ... F2UB89 38773335
    815151 8src:A (2.92) BS03 CA ? GO:0005216 ... F2UB89 38773335
    815152 8src:A (2.92) BS04 CA ? GO:0005216 ... F2UB89 38773335
    815153 8src:A (2.92) BS05 CA ? GO:0005216 ... F2UB89 38773335
    815154 8src:A (2.92) BS06 CLR ? GO:0005216 ... F2UB89 38773335
    815155 8src:A (2.92) BS07 APR ? GO:0005216 ... F2UB89 38773335
    815156 8src:A (2.92) BS08 CLR ? GO:0005216 ... F2UB89 38773335
    815157 8src:A (2.92) BS09 CLR ? GO:0005216 ... F2UB89 38773335
    815158 8src:A (2.92) BS10 CLR ? GO:0005216 ... F2UB89 38773335
    815159 8src:B (2.92) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    815160 8src:B (2.92) BS02 APR ? GO:0005216 ... F2UB89 38773335
    815161 8src:B (2.92) BS03 CA ? GO:0005216 ... F2UB89 38773335
    815162 8src:B (2.92) BS04 CA ? GO:0005216 ... F2UB89 38773335
    815163 8src:B (2.92) BS05 CA ? GO:0005216 ... F2UB89 38773335
    815164 8src:B (2.92) BS06 CA ? GO:0005216 ... F2UB89 38773335
    815165 8src:B (2.92) BS07 CLR ? GO:0005216 ... F2UB89 38773335
    815166 8src:B (2.92) BS08 APR ? GO:0005216 ... F2UB89 38773335
    815167 8src:B (2.92) BS09 CLR ? GO:0005216 ... F2UB89 38773335
    815168 8src:B (2.92) BS10 CLR ? GO:0005216 ... F2UB89 38773335
    815169 8src:C (2.92) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    815170 8src:C (2.92) BS02 APR ? GO:0005216 ... F2UB89 38773335
    815171 8src:C (2.92) BS03 CA ? GO:0005216 ... F2UB89 38773335
    815172 8src:C (2.92) BS04 CA ? GO:0005216 ... F2UB89 38773335
    815173 8src:C (2.92) BS05 CA ? GO:0005216 ... F2UB89 38773335
    815174 8src:C (2.92) BS06 CA ? GO:0005216 ... F2UB89 38773335
    815175 8src:C (2.92) BS07 CLR ? GO:0005216 ... F2UB89 38773335
    815176 8src:C (2.92) BS08 APR ? GO:0005216 ... F2UB89 38773335
    815177 8src:C (2.92) BS09 CLR ? GO:0005216 ... F2UB89 38773335
    815178 8src:C (2.92) BS10 CLR ? GO:0005216 ... F2UB89 38773335
    815179 8src:D (2.92) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    815180 8src:D (2.92) BS02 CLR ? GO:0005216 ... F2UB89 38773335
    815181 8src:D (2.92) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    815182 8src:D (2.92) BS04 APR ? GO:0005216 ... F2UB89 38773335
    815183 8src:D (2.92) BS05 CA ? GO:0005216 ... F2UB89 38773335
    815184 8src:D (2.92) BS06 CA ? GO:0005216 ... F2UB89 38773335
    815185 8src:D (2.92) BS07 CA ? GO:0005216 ... F2UB89 38773335
    815186 8src:D (2.92) BS08 CA ? GO:0005216 ... F2UB89 38773335
    815187 8src:D (2.92) BS09 CLR ? GO:0005216 ... F2UB89 38773335
    815188 8src:D (2.92) BS10 APR ? GO:0005216 ... F2UB89 38773335
    815189 8srd:A (2.91) BS01 APR ? GO:0005216 ... F2UB89 N/A
    815190 8srd:A (2.91) BS02 MG ? GO:0005216 ... F2UB89 N/A
    815191 8srd:A (2.91) BS03 CLR ? GO:0005216 ... F2UB89 N/A
    815192 8srd:A (2.91) BS04 APR ? GO:0005216 ... F2UB89 N/A
    815193 8srd:A (2.91) BS05 CLR ? GO:0005216 ... F2UB89 N/A
    815194 8srd:A (2.91) BS06 CLR ? GO:0005216 ... F2UB89 N/A
    815195 8srd:B (2.91) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    815196 8srd:B (2.91) BS02 APR ? GO:0005216 ... F2UB89 N/A
    815197 8srd:B (2.91) BS03 MG ? GO:0005216 ... F2UB89 N/A
    815198 8srd:B (2.91) BS04 CLR ? GO:0005216 ... F2UB89 N/A
    815199 8srd:B (2.91) BS05 APR ? GO:0005216 ... F2UB89 N/A
    815200 8srd:B (2.91) BS06 CLR ? GO:0005216 ... F2UB89 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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