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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    813601 8sia:C (2.91) BS04 6RA 2.7.11.1 GO:0005216 ... Q923J1 37156763
    813602 8sia:C (2.91) BS05 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    813603 8sia:D (2.91) BS01 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    813604 8sia:D (2.91) BS02 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    813605 8sia:D (2.91) BS03 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    813606 8sia:D (2.91) BS04 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    813607 8sia:D (2.91) BS05 6RA 2.7.11.1 GO:0005216 ... Q923J1 37156763
    813608 8sic:E (2.76) BS01 ZN ? N/A P03200 N/A
    813609 8sic:E (2.76) BS02 ZN ? N/A P03200 N/A
    813610 8sic:G (2.76) BS01 ZN ? N/A P03200 N/A
    813611 8sic:G (2.76) BS02 ZN ? N/A P03200 N/A
    813612 8sid:A (2.71) BS01 ABU ? GO:0004888 ... P47870 37607940
    813613 8sid:B (2.71) BS01 ABU ? GO:0004888 ... P14867 37607940
    813614 8sid:C (2.71) BS01 ABU ? GO:0004888 ... P47870 37607940
    813615 8sid:C (2.71) BS02 Q3G ? GO:0004888 ... P47870 37607940
    813616 8sid:D (2.71) BS01 ABU ? GO:0004888 ... P14867 37607940
    813617 8sid:E (2.71) BS01 MAN ? GO:0004888 ... P18507 37607940
    813618 8sie:C (2.7) BS01 CLR ? GO:0005886 ... I3L8V6 38184688
    813619 8sie:C (2.7) BS02 CLR ? GO:0005886 ... I3L8V6 38184688
    813620 8sie:C (2.7) BS03 CLR ? GO:0005886 ... I3L8V6 38184688
    813621 8sie:C (2.7) BS04 CLR ? GO:0005886 ... I3L8V6 38184688
    813622 8sie:C (2.7) BS05 LBN ? GO:0005886 ... I3L8V6 38184688
    813623 8sie:C (2.7) BS06 CLR ? GO:0005886 ... I3L8V6 38184688
    813624 8sie:C (2.7) BS07 BCT ? GO:0005886 ... I3L8V6 38184688
    813625 8sie:C (2.7) BS08 BCT ? GO:0005886 ... I3L8V6 38184688
    813626 8sie:C (2.7) BS09 AV0 ? GO:0005886 ... I3L8V6 38184688
    813627 8sie:D (2.7) BS01 CLR ? GO:0005886 ... I3L8V6 38184688
    813628 8sie:D (2.7) BS02 CLR ? GO:0005886 ... I3L8V6 38184688
    813629 8sie:D (2.7) BS03 CLR ? GO:0005886 ... I3L8V6 38184688
    813630 8sie:D (2.7) BS04 CLR ? GO:0005886 ... I3L8V6 38184688
    813631 8sie:D (2.7) BS05 CLR ? GO:0005886 ... I3L8V6 38184688
    813632 8sie:D (2.7) BS06 LBN ? GO:0005886 ... I3L8V6 38184688
    813633 8sie:D (2.7) BS07 BCT ? GO:0005886 ... I3L8V6 38184688
    813634 8sie:D (2.7) BS08 BCT ? GO:0005886 ... I3L8V6 38184688
    813635 8sie:D (2.7) BS09 AV0 ? GO:0005886 ... I3L8V6 38184688
    813636 8sig:A (1.78) BS01 GWU 2.1.1.319 GO:0016274 ... Q86X55 N/A
    813637 8sih:A (2.35) BS01 I1K 2.1.1.319 GO:0016274 ... Q86X55 N/A
    813638 8sih:A (2.35) BS02 CA 2.1.1.319 GO:0016274 ... Q86X55 N/A
    813639 8sik:B (2.9) BS01 CA ? GO:0000086 ... P0DP23 37192161
    813640 8sik:F (2.9) BS01 CA ? GO:0000086 ... P0DP23 37192161
    813641 8sik:H (2.9) BS01 CA ? GO:0000086 ... P0DP23 37192161
    813642 8sim:B (6.2) BS01 CA ? GO:0000086 ... P0DP23 37192161
    813643 8sim:B (6.2) BS02 CA ? GO:0000086 ... P0DP23 37192161
    813644 8sim:D (6.2) BS01 CA ? GO:0000086 ... P0DP23 37192161
    813645 8sim:D (6.2) BS02 CA ? GO:0000086 ... P0DP23 37192161
    813646 8sim:F (6.2) BS01 CA ? GO:0000086 ... P0DP23 37192161
    813647 8sim:F (6.2) BS02 CA ? GO:0000086 ... P0DP23 37192161
    813648 8sim:H (6.2) BS01 CA ? GO:0000086 ... P0DP23 37192161
    813649 8sim:H (6.2) BS02 CA ? GO:0000086 ... P0DP23 37192161
    813650 8sio:A (2.2) BS01 GXF 2.1.1.319 GO:0016274 ... O60678 N/A
    813651 8sio:B (2.2) BS01 GXF 2.1.1.319 GO:0016274 ... O60678 N/A
    813652 8siu:A (1.8) BS01 peptide ? N/A A0A140UHX1 37551430
    813653 8siv:A (1.759) BS01 ZXH 2.7.11.1 GO:0000077 ... O14757 37861679
    813654 8siw:A (1.877) BS01 ZXL 2.7.11.1 GO:0000077 ... O14757 37861679
    813655 8siw:B (1.877) BS01 ZXL 2.7.11.1 GO:0000077 ... O14757 37861679
    813656 8six:A (1.55) BS01 ZXP 2.7.11.1 GO:0000077 ... O14757 37861679
    813657 8siy:A (2.9) BS01 peptide ? GO:0000775 ... A0A140UHX1 37551430
    813658 8siy:C (2.9) BS01 dna ? GO:0000786 ... P84233 37551430
    813659 8siy:C (2.9) BS02 dna ? GO:0000786 ... P84233 37551430
    813660 8siy:D (2.9) BS01 dna ? GO:0000786 ... P62799 37551430
    813661 8siy:D (2.9) BS02 dna ? GO:0000786 ... P62799 37551430
    813662 8siy:E (2.9) BS01 dna ? GO:0000786 ... P06897 37551430
    813663 8siy:E (2.9) BS02 dna ? GO:0000786 ... P06897 37551430
    813664 8siy:F (2.9) BS01 dna ? GO:0000786 ... P02281 37551430
    813665 8siy:F (2.9) BS02 dna ? GO:0000786 ... P02281 37551430
    813666 8siy:G (2.9) BS01 dna ? GO:0000786 ... P84233 37551430
    813667 8siy:G (2.9) BS02 dna ? GO:0000786 ... P84233 37551430
    813668 8siy:H (2.9) BS01 dna ? GO:0000786 ... P62799 37551430
    813669 8siy:H (2.9) BS02 dna ? GO:0000786 ... P62799 37551430
    813670 8siy:I (2.9) BS01 dna ? GO:0000786 ... P06897 37551430
    813671 8siy:I (2.9) BS02 dna ? GO:0000786 ... P06897 37551430
    813672 8siy:J (2.9) BS01 dna ? GO:0000786 ... P02281 37551430
    813673 8siy:J (2.9) BS02 dna ? GO:0000786 ... P02281 37551430
    813674 8sj0:A (2.55) BS01 dna 2.7.7.86 N/A Q8C6L5 38740774
    813675 8sj0:A (2.55) BS02 dna 2.7.7.86 N/A Q8C6L5 38740774
    813676 8sj0:A (2.55) BS03 dna 2.7.7.86 N/A Q8C6L5 38740774
    813677 8sj0:A (2.55) BS04 dna 2.7.7.86 N/A Q8C6L5 38740774
    813678 8sj0:A (2.55) BS05 DTP 2.7.7.86 N/A Q8C6L5 38740774
    813679 8sj0:A (2.55) BS06 ZN 2.7.7.86 N/A Q8C6L5 38740774
    813680 8sj0:A (2.55) BS07 MG 2.7.7.86 N/A Q8C6L5 38740774
    813681 8sj0:C (2.55) BS01 dna 2.7.7.86 N/A Q8C6L5 38740774
    813682 8sj0:C (2.55) BS02 dna 2.7.7.86 N/A Q8C6L5 38740774
    813683 8sj0:C (2.55) BS03 dna 2.7.7.86 N/A Q8C6L5 38740774
    813684 8sj0:C (2.55) BS04 dna 2.7.7.86 N/A Q8C6L5 38740774
    813685 8sj0:C (2.55) BS05 DTP 2.7.7.86 N/A Q8C6L5 38740774
    813686 8sj0:C (2.55) BS06 ZN 2.7.7.86 N/A Q8C6L5 38740774
    813687 8sj0:C (2.55) BS07 MG 2.7.7.86 N/A Q8C6L5 38740774
    813688 8sj1:A (2.81) BS01 dna 2.7.7.86 N/A Q8C6L5 38740774
    813689 8sj1:A (2.81) BS02 dna 2.7.7.86 N/A Q8C6L5 38740774
    813690 8sj1:A (2.81) BS03 dna 2.7.7.86 N/A Q8C6L5 38740774
    813691 8sj1:A (2.81) BS04 dna 2.7.7.86 N/A Q8C6L5 38740774
    813692 8sj1:A (2.81) BS05 3AT 2.7.7.86 N/A Q8C6L5 38740774
    813693 8sj1:A (2.81) BS06 ZN 2.7.7.86 N/A Q8C6L5 38740774
    813694 8sj1:A (2.81) BS07 MG 2.7.7.86 N/A Q8C6L5 38740774
    813695 8sj1:C (2.81) BS01 dna 2.7.7.86 N/A Q8C6L5 38740774
    813696 8sj1:C (2.81) BS02 dna 2.7.7.86 N/A Q8C6L5 38740774
    813697 8sj1:C (2.81) BS03 dna 2.7.7.86 N/A Q8C6L5 38740774
    813698 8sj1:C (2.81) BS04 3AT 2.7.7.86 N/A Q8C6L5 38740774
    813699 8sj1:C (2.81) BS05 ZN 2.7.7.86 N/A Q8C6L5 38740774
    813700 8sj1:C (2.81) BS06 MG 2.7.7.86 N/A Q8C6L5 38740774
    813701 8sj2:A (2.23) BS01 dna 2.7.7.86 N/A Q8C6L5 38740774
    813702 8sj2:A (2.23) BS02 dna 2.7.7.86 N/A Q8C6L5 38740774
    813703 8sj2:A (2.23) BS03 dna 2.7.7.86 N/A Q8C6L5 38740774
    813704 8sj2:A (2.23) BS04 ATP 2.7.7.86 N/A Q8C6L5 38740774
    813705 8sj2:A (2.23) BS05 DGT 2.7.7.86 N/A Q8C6L5 38740774
    813706 8sj2:A (2.23) BS06 MG 2.7.7.86 N/A Q8C6L5 38740774
    813707 8sj2:A (2.23) BS07 ZN 2.7.7.86 N/A Q8C6L5 38740774
    813708 8sj2:C (2.23) BS01 dna 2.7.7.86 N/A Q8C6L5 38740774
    813709 8sj2:C (2.23) BS02 dna 2.7.7.86 N/A Q8C6L5 38740774
    813710 8sj2:C (2.23) BS03 dna 2.7.7.86 N/A Q8C6L5 38740774
    813711 8sj2:C (2.23) BS04 ATP 2.7.7.86 N/A Q8C6L5 38740774
    813712 8sj2:C (2.23) BS05 DGT 2.7.7.86 N/A Q8C6L5 38740774
    813713 8sj2:C (2.23) BS06 MG 2.7.7.86 N/A Q8C6L5 38740774
    813714 8sj2:C (2.23) BS07 ZN 2.7.7.86 N/A Q8C6L5 38740774
    813715 8sj7:A (2.09) BS01 rna ? GO:0003723 ... Q09312 37953271
    813716 8sj8:A (2.5) BS01 ZN 2.7.7.86 N/A Q8N884 38740774
    813717 8sj8:A (2.5) BS02 OKR 2.7.7.86 N/A Q8N884 38740774
    813718 8sjd:A (5.1) BS01 dna ? GO:0003677 ... Q25438 37491363
    813719 8sjd:A (5.1) BS02 dna ? GO:0003677 ... Q25438 37491363
    813720 8sjd:A (5.1) BS03 dna ? GO:0003677 ... Q25438 37491363
    813721 8sjd:A (5.1) BS04 dna ? GO:0003677 ... Q25438 37491363
    813722 8sjd:B (5.1) BS01 dna ? GO:0003677 ... Q25438 37491363
    813723 8sjd:B (5.1) BS02 dna ? GO:0003677 ... Q25438 37491363
    813724 8sjd:B (5.1) BS03 dna ? GO:0003677 ... Q25438 37491363
    813725 8sjd:B (5.1) BS04 dna ? GO:0003677 ... Q25438 37491363
    813726 8sjd:B (5.1) BS05 dna ? GO:0003677 ... Q25438 37491363
    813727 8sjd:C (5.1) BS01 dna ? GO:0003677 ... Q25438 37491363
    813728 8sjd:C (5.1) BS02 dna ? GO:0003677 ... Q25438 37491363
    813729 8sjd:C (5.1) BS03 dna ? GO:0003677 ... Q25438 37491363
    813730 8sjd:D (5.1) BS01 dna ? GO:0003677 ... Q25438 37491363
    813731 8sjd:D (5.1) BS02 dna ? GO:0003677 ... Q25438 37491363
    813732 8sjd:D (5.1) BS03 dna ? GO:0003677 ... Q25438 37491363
    813733 8sjd:D (5.1) BS04 dna ? GO:0003677 ... Q25438 37491363
    813734 8sjx:A (2.5) BS01 HWP ? GO:0002088 ... Q6J8I9 N/A
    813735 8sjx:A (2.5) BS02 HWP ? GO:0002088 ... Q6J8I9 N/A
    813736 8sjx:A (2.5) BS03 HWP ? GO:0002088 ... Q6J8I9 N/A
    813737 8sjx:A (2.5) BS04 HWP ? GO:0002088 ... Q6J8I9 N/A
    813738 8sjx:A (2.5) BS05 HWP ? GO:0002088 ... Q6J8I9 N/A
    813739 8sjx:A (2.5) BS06 CLR ? GO:0002088 ... Q6J8I9 N/A
    813740 8sjy:A (2.35) BS01 HWP ? GO:0002088 ... Q6J8I9 39222068
    813741 8sjy:A (2.35) BS02 HWP ? GO:0002088 ... Q6J8I9 39222068
    813742 8sjy:A (2.35) BS03 HWP ? GO:0002088 ... Q6J8I9 39222068
    813743 8sjy:A (2.35) BS04 CLR ? GO:0002088 ... Q6J8I9 39222068
    813744 8sjy:A (2.35) BS05 CLR ? GO:0002088 ... Q6J8I9 39222068
    813745 8sjy:A (2.35) BS06 CLR ? GO:0002088 ... Q6J8I9 39222068
    813746 8sk0:A (1.51) BS01 NAD 4.2.1.46 GO:0000166 ... A0A1C5ADV9 37286037
    813747 8sk0:A (1.51) BS02 TYD 4.2.1.46 GO:0000166 ... A0A1C5ADV9 37286037
    813748 8sk0:B (1.51) BS01 NAD 4.2.1.46 GO:0000166 ... A0A1C5ADV9 37286037
    813749 8sk2:A (1.3) BS01 ZN 3.5.2.6 N/A C7C422 37549809
    813750 8sk2:A (1.3) BS02 ZN 3.5.2.6 N/A C7C422 37549809
    813751 8sk4:A (2.0) BS01 I3R 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 37069799
    813752 8skh:A (1.882) BS01 A1W 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 37069799
    813753 8ski:A (2.163) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    813754 8ski:A (2.163) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    813755 8ski:A (2.163) BS03 B7P 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    813756 8ski:A (2.163) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    813757 8skl:A (1.55) BS01 V2O 3.1.3.48 GO:0004725 ... P18031 37500611
    813758 8skn:A (2.41) BS01 6I9 3.6.5.5 GO:0003924 ... O00429 37583827
    813759 8skn:B (2.41) BS01 6I9 3.6.5.5 GO:0003924 ... O00429 37583827
    813760 8sko:A (1.3) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 37549809
    813761 8sko:A (1.3) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 37549809
    813762 8sko:A (1.3) BS03 X8Z 3.5.2.6 GO:0008270 ... C7C422 37549809
    813763 8sko:B (1.3) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 37549809
    813764 8sko:B (1.3) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 37549809
    813765 8sko:B (1.3) BS03 X8Z 3.5.2.6 GO:0008270 ... C7C422 37549809
    813766 8skp:A (1.3) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 37549809
    813767 8skp:A (1.3) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 37549809
    813768 8skp:A (1.3) BS03 WAF 3.5.2.6 GO:0008270 ... C7C422 37549809
    813769 8skr:A (2.99) BS01 PLP 2.6.1.1
    2.6.1.7    		 GO:0003723 ... P00505 37839702
    813770 8skr:C (2.99) BS01 PLP 2.6.1.1
    2.6.1.7    		 GO:0003723 ... P00505 37839702
    813771 8sks:A (2.91) BS01 MN 1.15.1.1 GO:0000302 ... P04179 37839702
    813772 8sks:B (2.91) BS01 MN 1.15.1.1 GO:0000302 ... P04179 37839702
    813773 8sks:C (2.91) BS01 MN 1.15.1.1 GO:0000302 ... P04179 37839702
    813774 8sks:D (2.91) BS01 MN 1.15.1.1 GO:0000302 ... P04179 37839702
    813775 8skt:A (2.69) BS01 dna 2.7.7.86 N/A Q8C6L5 38740774
    813776 8skt:A (2.69) BS02 dna 2.7.7.86 N/A Q8C6L5 38740774
    813777 8skt:A (2.69) BS03 dna 2.7.7.86 N/A Q8C6L5 38740774
    813778 8skt:A (2.69) BS04 dna 2.7.7.86 N/A Q8C6L5 38740774
    813779 8skt:A (2.69) BS05 ATP 2.7.7.86 N/A Q8C6L5 38740774
    813780 8skt:A (2.69) BS06 ZN 2.7.7.86 N/A Q8C6L5 38740774
    813781 8skt:A (2.69) BS07 MN 2.7.7.86 N/A Q8C6L5 38740774
    813782 8skt:A (2.69) BS08 MN 2.7.7.86 N/A Q8C6L5 38740774
    813783 8skt:C (2.69) BS01 dna 2.7.7.86 N/A Q8C6L5 38740774
    813784 8skt:C (2.69) BS02 dna 2.7.7.86 N/A Q8C6L5 38740774
    813785 8skt:C (2.69) BS03 dna 2.7.7.86 N/A Q8C6L5 38740774
    813786 8skt:C (2.69) BS04 ATP 2.7.7.86 N/A Q8C6L5 38740774
    813787 8skt:C (2.69) BS05 ZN 2.7.7.86 N/A Q8C6L5 38740774
    813788 8skt:C (2.69) BS06 MN 2.7.7.86 N/A Q8C6L5 38740774
    813789 8skt:C (2.69) BS07 MN 2.7.7.86 N/A Q8C6L5 38740774
    813790 8skv:A (3.1) BS01 peptide ? N/A P01876 37872175
    813791 8skv:A (3.1) BS02 peptide ? N/A P01876 37872175
    813792 8sky:A (2.4) BS01 OXL ? GO:0003824 ... O06724 38047707
    813793 8sky:A (2.4) BS02 MN ? GO:0003824 ... O06724 38047707
    813794 8sky:B (2.4) BS01 OXL ? GO:0003824 ... O06724 38047707
    813795 8sky:B (2.4) BS02 MN ? GO:0003824 ... O06724 38047707
    813796 8sl1:A (3.13) BS01 ZN 3.4.24.- GO:0008237 ... Q9BXP8 37898658
    813797 8sl1:A (3.13) BS02 CA 3.4.24.- GO:0008237 ... Q9BXP8 37898658
    813798 8sl1:A (3.13) BS03 CA 3.4.24.- GO:0008237 ... Q9BXP8 37898658
    813799 8sl7:A (2.07) BS01 BY3 4.1.99.1 GO:0003824 ... A0A845MXR5 37633277
    813800 8sl7:B (2.07) BS01 BY3 4.1.99.1 GO:0003824 ... A0A845MXR5 37633277
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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