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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    811801 8sao:D (2.502) BS01 peptide ? GO:0004672 ... A0A6H0TJ16 37901177
    811802 8sb6:A (1.8) BS01 peptide ? N/A P25440 37731000
    811803 8sb6:B (1.8) BS01 peptide ? N/A P25440 37731000
    811804 8sbb:A (3.59) BS01 FE ? GO:0004497 ... A0A1I2KHB9 37069165
    811805 8sbb:A (3.59) BS02 FE ? GO:0004497 ... A0A1I2KHB9 37069165
    811806 8sbc:A (2.3) BS01 ZTV 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 37399505
    811807 8sbg:A (1.94) BS01 PLP 4.1.99.1 GO:0006520 ... A0A3E5GM45 37633277
    811808 8sbi:A (2.73) BS01 HEM 1.14.14.154 GO:0004497 ... Q16850 N/A
    811809 8sbi:B (2.73) BS01 HEM 1.14.14.154 GO:0004497 ... Q16850 N/A
    811810 8sbj:A (3.1) BS01 ZUO 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 37399505
    811811 8sbk:A (1.8) BS01 peptide ? N/A A0A5H2UYS3 38039376
    811812 8sbl:A (3.0) BS01 peptide ? N/A A0A5H2UYS3 38039376
    811813 8sbl:D (3.0) BS01 peptide ? N/A A0A5H2UYS3 38039376
    811814 8sbl:G (3.0) BS01 peptide ? N/A A0A5H2UYS3 38039376
    811815 8sbl:J (3.0) BS01 peptide ? N/A A0A5H2UYS3 38039376
    811816 8sbm:A (1.47) BS01 ZN 2.7.13.3 N/A P9WGK3 37905955
    811817 8sbm:A (1.47) BS02 ZN 2.7.13.3 N/A P9WGK3 37905955
    811818 8sbm:B (1.47) BS01 ZN 2.7.13.3 N/A P9WGK3 37905955
    811819 8sbm:B (1.47) BS02 ZN 2.7.13.3 N/A P9WGK3 37905955
    811820 8sbq:A (1.5) BS01 ZUV 3.-.-.- GO:0016787 ... Q2FDS6 N/A
    811821 8sbq:A (1.5) BS02 ZUV 3.-.-.- GO:0016787 ... Q2FDS6 N/A
    811822 8sbq:B (1.5) BS01 ZUV 3.-.-.- GO:0016787 ... Q2FDS6 N/A
    811823 8sbq:B (1.5) BS02 ZUV 3.-.-.- GO:0016787 ... Q2FDS6 N/A
    811824 8sbr:A (2.59) BS01 CTP 6.3.4.2 GO:0000287 ... P0A7E5 37106216
    811825 8sbr:A (2.59) BS02 CTP 6.3.4.2 GO:0000287 ... P0A7E5 37106216
    811826 8sbr:B (2.59) BS01 CTP 6.3.4.2 GO:0000287 ... P0A7E5 37106216
    811827 8sbr:B (2.59) BS02 CTP 6.3.4.2 GO:0000287 ... P0A7E5 37106216
    811828 8sbv:B (1.55) BS01 ADP 1.3.1.28 GO:0000166 ... A0A0H3FXS4 N/A
    811829 8sby:A (2.3) BS01 NAD 1.3.1.28 GO:0000166 ... A0A0H3FXS4 N/A
    811830 8sby:B (2.3) BS01 NAD 1.3.1.28 GO:0000166 ... A0A0H3FXS4 N/A
    811831 8sbz:A (1.9) BS01 NAD 1.3.1.28 GO:0000166 ... A0A0H3FXS4 N/A
    811832 8sbz:B (1.9) BS01 NAD 1.3.1.28 GO:0000166 ... A0A0H3FXS4 N/A
    811833 8sc0:C (1.81) BS01 NAD 1.3.1.28 GO:0000166 ... A0A0H3FXS4 N/A
    811834 8sc0:D (1.81) BS01 NAD 1.3.1.28 GO:0000166 ... A0A0H3FXS4 N/A
    811835 8sc2:A (3.36) BS01 C9F ? GO:0005277 ... O15245 37821493
    811836 8sc3:A (3.24) BS01 ZVJ ? GO:0005277 ... O15245 37821493
    811837 8sc6:A (3.13) BS01 VIB ? GO:0005277 ... O15245 37821493
    811838 8sc7:A (1.984) BS01 D0D 2.7.10.1 N/A P00533 N/A
    811839 8sc8:A (2.687) BS01 D0D 2.7.11.1
    2.7.1.137
    2.7.1.153
    2.7.1.154    		 N/A P48736 N/A
    811840 8sc9:B (1.855) BS01 D0D ? N/A P37231 N/A
    811841 8scb:A (2.5) BS01 rna ? GO:0002181 ... G1TT27 38172604
    811842 8scb:A (2.5) BS02 MG ? GO:0002181 ... G1TT27 38172604
    811843 8scb:A (2.5) BS03 MG ? GO:0002181 ... G1TT27 38172604
    811844 8scb:AA (2.5) BS01 rna ? GO:0000028 ... G1TLT8 38172604
    811845 8scb:B (2.5) BS01 rna ? GO:0003723 ... G1TL06 38172604
    811846 8scb:B (2.5) BS02 MG ? GO:0003723 ... G1TL06 38172604
    811847 8scb:BB (2.5) BS01 rna ? GO:0003735 ... G1SS70 38172604
    811848 8scb:C (2.5) BS01 rna ? GO:0003723 ... G1SVW5 38172604
    811849 8scb:C (2.5) BS02 rna ? GO:0003723 ... G1SVW5 38172604
    811850 8scb:D (2.5) BS01 rna ? GO:0000027 ... P19949 38172604
    811851 8scb:D (2.5) BS02 rna ? GO:0000027 ... P19949 38172604
    811852 8scb:DD (2.5) BS01 rna 4.2.99.18 GO:0003677 ... G1TNM3 38172604
    811853 8scb:E (2.5) BS01 rna ? GO:0000027 ... G1SKF7 38172604
    811854 8scb:EE (2.5) BS01 rna ? GO:0003723 ... G1TK17 38172604
    811855 8scb:EE (2.5) BS02 MG ? GO:0003723 ... G1TK17 38172604
    811856 8scb:F (2.5) BS01 rna ? GO:0000463 ... G1TUB1 38172604
    811857 8scb:F (2.5) BS02 rna ? GO:0000463 ... G1TUB1 38172604
    811858 8scb:FF (2.5) BS01 rna ? GO:0000028 ... G1TFM5 38172604
    811859 8scb:FF (2.5) BS02 rna ? GO:0000028 ... G1TFM5 38172604
    811860 8scb:G (2.5) BS01 rna ? GO:0000470 ... G1STW0 38172604
    811861 8scb:G (2.5) BS02 rna ? GO:0000470 ... G1STW0 38172604
    811862 8scb:GG (2.5) BS01 rna ? GO:0000082 ... G1TM55 38172604
    811863 8scb:H (2.5) BS01 rna ? GO:0002181 ... G1SWI6 38172604
    811864 8scb:HH (2.5) BS01 rna ? GO:0003735 ... G1SVB0 38172604
    811865 8scb:I (2.5) BS01 rna ? GO:0000027 ... B7NZQ2 38172604
    811866 8scb:I (2.5) BS02 rna ? GO:0000027 ... B7NZQ2 38172604
    811867 8scb:I (2.5) BS03 MG ? GO:0000027 ... B7NZQ2 38172604
    811868 8scb:II (2.5) BS01 rna ? GO:0000462 ... G1TJW1 38172604
    811869 8scb:II (2.5) BS02 rna ? GO:0000462 ... G1TJW1 38172604
    811870 8scb:J (2.5) BS01 rna ? GO:0003723 ... G1TUB8 38172604
    811871 8scb:J (2.5) BS02 rna ? GO:0003723 ... G1TUB8 38172604
    811872 8scb:J (2.5) BS03 rna ? GO:0003723 ... G1TUB8 38172604
    811873 8scb:JJ (2.5) BS01 rna ? GO:0003723 ... B7NZS8 38172604
    811874 8scb:KK (2.5) BS01 rna ? GO:0003723 ... G1TPV3 38172604
    811875 8scb:LL (2.5) BS01 rna ? GO:0003735 ... G1TRM4 38172604
    811876 8scb:LL (2.5) BS02 MG ? GO:0003735 ... G1TRM4 38172604
    811877 8scb:M (2.5) BS01 rna ? GO:0003723 ... G1SZ12 38172604
    811878 8scb:MM (2.5) BS01 rna ? GO:0003735 ... G1SFR8 38172604
    811879 8scb:N (2.5) BS01 rna ? GO:0002181 ... G1T0C1 38172604
    811880 8scb:N (2.5) BS02 rna ? GO:0002181 ... G1T0C1 38172604
    811881 8scb:NN (2.5) BS01 rna ? GO:0003735 ... G1SP51 38172604
    811882 8scb:OO (2.5) BS01 rna ? GO:0000028 ... G1T1F0 38172604
    811883 8scb:OO (2.5) BS02 MG ? GO:0000028 ... G1T1F0 38172604
    811884 8scb:P (2.5) BS01 peptide ? GO:0002181 ... G1SCJ6 38172604
    811885 8scb:P (2.5) BS02 rna ? GO:0002181 ... G1SCJ6 38172604
    811886 8scb:P (2.5) BS03 rna ? GO:0002181 ... G1SCJ6 38172604
    811887 8scb:PP (2.5) BS01 rna ? GO:0000028 ... G1U0Q2 38172604
    811888 8scb:Q (2.5) BS01 rna ? GO:0002181 ... G1TFE0 38172604
    811889 8scb:QQ (2.5) BS01 rna ? GO:0000462 ... G1SGX4 38172604
    811890 8scb:R (2.5) BS01 rna ? GO:0003723 ... G1TJR3 38172604
    811891 8scb:R (2.5) BS02 rna ? GO:0003723 ... G1TJR3 38172604
    811892 8scb:RR (2.5) BS01 rna ? GO:0003735 ... G1TU13 38172604
    811893 8scb:SS (2.5) BS01 rna ? GO:0003676 ... G1TPG3 38172604
    811894 8scb:T (2.5) BS01 rna ? GO:0003735 ... G1SHQ2 38172604
    811895 8scb:T (2.5) BS02 rna ? GO:0003735 ... G1SHQ2 38172604
    811896 8scb:TT (2.5) BS01 rna ? GO:0000028 ... G1TN62 38172604
    811897 8scb:U (2.5) BS01 rna ? GO:0002181 ... G1TSG1 38172604
    811898 8scb:UU (2.5) BS01 rna ? GO:0003723 ... G1SIZ2 38172604
    811899 8scb:V (2.5) BS01 rna ? GO:0000122 ... G1T6D1 38172604
    811900 8scb:V (2.5) BS02 MG ? GO:0000122 ... G1T6D1 38172604
    811901 8scb:W (2.5) BS01 rna ? GO:0000027 ... G1SE28 38172604
    811902 8scb:WW (2.5) BS01 rna ? GO:0003735 ... G1TG89 38172604
    811903 8scb:X (2.5) BS01 rna ? GO:0000027 ... G1SE76 38172604
    811904 8scb:X (2.5) BS02 rna ? GO:0000027 ... G1SE76 38172604
    811905 8scb:XX (2.5) BS01 rna ? GO:0003735 ... G1SZ47 38172604
    811906 8scb:Y (2.5) BS01 rna ? GO:0002181 ... G1SQH0 38172604
    811907 8scb:Y (2.5) BS02 rna ? GO:0002181 ... G1SQH0 38172604
    811908 8scb:YY (2.5) BS01 rna ? GO:0003735 ... G1T3D8 38172604
    811909 8scb:Z (2.5) BS01 rna ? GO:0003735 ... G1TXF6 38172604
    811910 8scb:ZZ (2.5) BS01 rna ? GO:0003735 ... G1TDB3 38172604
    811911 8scb:a (2.5) BS01 rna ? GO:0003735 ... G1SNY0 38172604
    811912 8scb:aa (2.5) BS01 rna ? GO:0003729 ... G1TFE8 38172604
    811913 8scb:aa (2.5) BS02 ZN ? GO:0003729 ... G1TFE8 38172604
    811914 8scb:b (2.5) BS01 rna ? GO:0002181 ... G1SGR6 38172604
    811915 8scb:bb (2.5) BS01 rna ? GO:0000028 ... G1TZ76 38172604
    811916 8scb:c (2.5) BS01 rna ? GO:0002181 ... G1TDL2 38172604
    811917 8scb:cc (2.5) BS01 rna ? GO:0000028 ... G1TIB4 38172604
    811918 8scb:d (2.5) BS01 rna ? GO:0002181 ... G1SHG0 38172604
    811919 8scb:dd (2.5) BS01 rna ? GO:0003735 ... G1U7M4 38172604
    811920 8scb:dd (2.5) BS02 ZN ? GO:0003735 ... G1U7M4 38172604
    811921 8scb:e (2.5) BS01 rna ? GO:0003735 ... G1TUN8 38172604
    811922 8scb:e (2.5) BS02 MG ? GO:0003735 ... G1TUN8 38172604
    811923 8scb:ee (2.5) BS01 rna ? GO:0003735 ... G1T8A2 38172604
    811924 8scb:f (2.5) BS01 rna ? GO:0000049 ... G1SF08 38172604
    811925 8scb:f (2.5) BS02 MG ? GO:0000049 ... G1SF08 38172604
    811926 8scb:ff (2.5) BS01 rna ? GO:0003723 ... G1SK22 38172604
    811927 8scb:ff (2.5) BS02 ZN ? GO:0003723 ... G1SK22 38172604
    811928 8scb:g (2.5) BS01 rna ? GO:0003735 ... G1TXG5 38172604
    811929 8scb:g (2.5) BS02 ZN ? GO:0003735 ... G1TXG5 38172604
    811930 8scb:g (2.5) BS03 MG ? GO:0003735 ... G1TXG5 38172604
    811931 8scb:gg (2.5) BS01 rna ? GO:0001891 ... G1SJB4 38172604
    811932 8scb:h (2.5) BS01 rna ? GO:0000463 ... G1SIT5 38172604
    811933 8scb:h (2.5) BS02 rna ? GO:0000463 ... G1SIT5 38172604
    811934 8scb:i (2.5) BS01 rna ? GO:0002181 ... G1TTQ5 38172604
    811935 8scb:ii (2.5) BS01 rna ? GO:0000184 ... P62495 38172604
    811936 8scb:ii (2.5) BS02 rna ? GO:0000184 ... P62495 38172604
    811937 8scb:ii (2.5) BS03 rna ? GO:0000184 ... P62495 38172604
    811938 8scb:ii (2.5) BS04 rna ? GO:0000184 ... P62495 38172604
    811939 8scb:ii (2.5) BS05 ZVM ? GO:0000184 ... P62495 38172604
    811940 8scb:j (2.5) BS01 rna ? GO:0003723 ... U3KPD5 38172604
    811941 8scb:j (2.5) BS02 rna ? GO:0003723 ... U3KPD5 38172604
    811942 8scb:j (2.5) BS03 ZN ? GO:0003723 ... U3KPD5 38172604
    811943 8scb:jj (2.5) BS01 rna ? GO:0000054 ... G1SG72 38172604
    811944 8scb:jj (2.5) BS02 rna ? GO:0000054 ... G1SG72 38172604
    811945 8scb:jj (2.5) BS03 SF4 ? GO:0000054 ... G1SG72 38172604
    811946 8scb:jj (2.5) BS04 SF4 ? GO:0000054 ... G1SG72 38172604
    811947 8scb:k (2.5) BS01 rna ? GO:0003735 ... G1U001 38172604
    811948 8scb:l (2.5) BS01 rna ? GO:0003735 ... G1TTN1 38172604
    811949 8scb:l (2.5) BS02 rna ? GO:0003735 ... G1TTN1 38172604
    811950 8scb:m (2.5) BS01 rna ? GO:0003735 ... A0A2K5PSA0 38172604
    811951 8scb:m (2.5) BS02 ZN ? GO:0003735 ... A0A2K5PSA0 38172604
    811952 8scb:o (2.5) BS01 rna ? GO:0003735 ... G1T040 38172604
    811953 8scb:o (2.5) BS02 rna ? GO:0003735 ... G1T040 38172604
    811954 8scb:o (2.5) BS03 ZN ? GO:0003735 ... G1T040 38172604
    811955 8scb:p (2.5) BS01 rna ? GO:0003735 ... G1SY53 38172604
    811956 8scb:p (2.5) BS02 ZN ? GO:0003735 ... G1SY53 38172604
    811957 8scb:r (2.5) BS01 rna ? GO:0003735 ... G1U7L1 38172604
    811958 8scb:s (2.5) BS01 rna ? GO:0000027 ... G1SPK4 38172604
    811959 8scb:t (2.5) BS01 rna ? GO:0003723 ... G1SMR7 38172604
    811960 8scd:A (2.06) BS01 XHP 2.5.1.15 GO:0004156 ... Q8GJ22 37419898
    811961 8scd:A (2.06) BS02 PAB 2.5.1.15 GO:0004156 ... Q8GJ22 37419898
    811962 8scd:A (2.06) BS03 POP 2.5.1.15 GO:0004156 ... Q8GJ22 37419898
    811963 8scg:A (2.0) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    811964 8scg:A (2.0) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    811965 8scg:A (2.0) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    811966 8scg:A (2.0) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    811967 8scg:D (2.0) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    811968 8scg:D (2.0) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    811969 8scg:D (2.0) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    811970 8scg:D (2.0) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    811971 8sci:A (2.67) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    811972 8sci:A (2.67) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    811973 8sci:A (2.67) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    811974 8sci:A (2.67) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    811975 8sci:D (2.67) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    811976 8sci:D (2.67) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    811977 8sci:D (2.67) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    811978 8sci:D (2.67) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    811979 8scj:A (2.68) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    811980 8scj:A (2.68) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    811981 8scj:A (2.68) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    811982 8scj:A (2.68) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    811983 8scj:D (2.68) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    811984 8scj:D (2.68) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    811985 8scj:D (2.68) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    811986 8scj:D (2.68) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    811987 8sck:A (2.3) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    811988 8sck:A (2.3) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    811989 8sck:A (2.3) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    811990 8sck:A (2.3) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    811991 8sck:D (2.3) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    811992 8sck:D (2.3) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    811993 8sck:D (2.3) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    811994 8sck:D (2.3) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    811995 8scl:A (2.44) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    811996 8scl:A (2.44) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    811997 8scl:A (2.44) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    811998 8scl:A (2.44) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 37883544
    811999 8scl:D (2.44) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    812000 8scl:D (2.44) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 37883544
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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