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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    805201 8pw5:n1 (3.6) BS01 ZMP ? GO:0005739 ... Q9CQJ8 38575788
    805202 8pw5:o (3.6) BS01 HEA 7.1.1.9 GO:0001666 ... P00405 38575788
    805203 8pw5:o (3.6) BS02 MG 7.1.1.9 GO:0001666 ... P00405 38575788
    805204 8pw5:o (3.6) BS03 CUA 7.1.1.9 GO:0001666 ... P00405 38575788
    805205 8pw5:s (3.6) BS01 ZN ? GO:0005739 ... P19536 38575788
    805206 8pw6:1 (3.3) BS01 FMN 7.1.1.2 GO:0005515 ... Q91YT0 38575788
    805207 8pw6:1 (3.3) BS02 SF4 7.1.1.2 GO:0005515 ... Q91YT0 38575788
    805208 8pw6:2 (3.3) BS01 FES 7.1.1.2 GO:0005739 ... Q9D6J6 38575788
    805209 8pw6:3 (3.3) BS01 SF4 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    805210 8pw6:3 (3.3) BS02 SF4 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    805211 8pw6:3 (3.3) BS03 FES 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    805212 8pw6:6 (3.3) BS01 SF4 7.1.1.2 GO:0003954 ... Q9DC70 38575788
    805213 8pw6:7 (3.3) BS01 ZN ? GO:0001822 ... P52503 38575788
    805214 8pw6:9 (3.3) BS01 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 38575788
    805215 8pw6:9 (3.3) BS02 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 38575788
    805216 8pw6:C (3.3) BS01 HEM ? GO:0001666 ... P00158 38575788
    805217 8pw6:C (3.3) BS02 HEM ? GO:0001666 ... P00158 38575788
    805218 8pw6:D (3.3) BS01 HEC 7.1.1.8 GO:0005515 ... Q9D0M3 38575788
    805219 8pw6:D1 (3.3) BS01 SF4 7.1.1.2 GO:0003954 ... Q91WD5 38575788
    805220 8pw6:E (3.3) BS01 FES 7.1.1.8 GO:0005515 ... Q9CR68 38575788
    805221 8pw6:N (3.3) BS01 HEM ? GO:0001666 ... P00158 38575788
    805222 8pw6:N (3.3) BS02 HEM ? GO:0001666 ... P00158 38575788
    805223 8pw6:O (3.3) BS01 HEC 7.1.1.8 GO:0005515 ... Q9D0M3 38575788
    805224 8pw6:O1 (3.3) BS01 DGT ? GO:0005739 ... Q99LC3 38575788
    805225 8pw6:P (3.3) BS01 FES 7.1.1.8 GO:0005515 ... Q9CR68 38575788
    805226 8pw6:P1 (3.3) BS01 NDP ? GO:0003954 ... Q9DC69 38575788
    805227 8pw6:W1 (3.3) BS01 ZMP ? GO:0003674 ... Q9CQZ5 38575788
    805228 8pw6:n (3.3) BS01 CU 7.1.1.9 GO:0001666 ... P00397 38575788
    805229 8pw6:n (3.3) BS02 HEA 7.1.1.9 GO:0001666 ... P00397 38575788
    805230 8pw6:n (3.3) BS03 HEA 7.1.1.9 GO:0001666 ... P00397 38575788
    805231 8pw6:n1 (3.3) BS01 ZMP ? GO:0005739 ... Q9CQJ8 38575788
    805232 8pw6:o (3.3) BS01 HEA 7.1.1.9 GO:0001666 ... P00405 38575788
    805233 8pw6:o (3.3) BS02 CUA 7.1.1.9 GO:0001666 ... P00405 38575788
    805234 8pw6:s (3.3) BS01 ZN ? GO:0005739 ... P19536 38575788
    805235 8pw7:1 (3.5) BS01 FMN 7.1.1.2 GO:0005515 ... Q91YT0 38575788
    805236 8pw7:1 (3.5) BS02 SF4 7.1.1.2 GO:0005515 ... Q91YT0 38575788
    805237 8pw7:2 (3.5) BS01 FES 7.1.1.2 GO:0005739 ... Q9D6J6 38575788
    805238 8pw7:3 (3.5) BS01 SF4 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    805239 8pw7:3 (3.5) BS02 SF4 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    805240 8pw7:3 (3.5) BS03 FES 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    805241 8pw7:6 (3.5) BS01 SF4 7.1.1.2 GO:0003954 ... Q9DC70 38575788
    805242 8pw7:7 (3.5) BS01 ZN ? GO:0001822 ... P52503 38575788
    805243 8pw7:9 (3.5) BS01 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 38575788
    805244 8pw7:9 (3.5) BS02 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 38575788
    805245 8pw7:C (3.5) BS01 HEM ? GO:0001666 ... P00158 38575788
    805246 8pw7:C (3.5) BS02 HEM ? GO:0001666 ... P00158 38575788
    805247 8pw7:D (3.5) BS01 HEC 7.1.1.8 GO:0005515 ... Q9D0M3 38575788
    805248 8pw7:D1 (3.5) BS01 SF4 7.1.1.2 GO:0003954 ... Q91WD5 38575788
    805249 8pw7:E (3.5) BS01 FES 7.1.1.8 GO:0005515 ... Q9CR68 38575788
    805250 8pw7:N (3.5) BS01 HEM ? GO:0001666 ... P00158 38575788
    805251 8pw7:N (3.5) BS02 HEM ? GO:0001666 ... P00158 38575788
    805252 8pw7:O (3.5) BS01 HEC 7.1.1.8 GO:0005515 ... Q9D0M3 38575788
    805253 8pw7:O1 (3.5) BS01 DGT ? GO:0005739 ... Q99LC3 38575788
    805254 8pw7:P (3.5) BS01 FES 7.1.1.8 GO:0005515 ... Q9CR68 38575788
    805255 8pw7:P1 (3.5) BS01 NDP ? GO:0003954 ... Q9DC69 38575788
    805256 8pw7:T1 (3.5) BS01 ZMP ? GO:0005654 ... Q9CR21 38575788
    805257 8pw7:W1 (3.5) BS01 ZMP ? GO:0003674 ... Q9CQZ5 38575788
    805258 8pw7:n (3.5) BS01 CU 7.1.1.9 GO:0001666 ... P00397 38575788
    805259 8pw7:n (3.5) BS02 HEA 7.1.1.9 GO:0001666 ... P00397 38575788
    805260 8pw7:n (3.5) BS03 HEA 7.1.1.9 GO:0001666 ... P00397 38575788
    805261 8pw7:n1 (3.5) BS01 ZMP ? GO:0005739 ... Q9CQJ8 38575788
    805262 8pw7:o (3.5) BS01 HEA 7.1.1.9 GO:0001666 ... P00405 38575788
    805263 8pw7:o (3.5) BS02 CUA 7.1.1.9 GO:0001666 ... P00405 38575788
    805264 8pw7:s (3.5) BS01 ZN ? GO:0005739 ... P19536 38575788
    805265 8pw8:A (2.3) BS01 HZ2 2.1.1.348 GO:0001510 ... Q9HCE5 38470714
    805266 8pw9:A (2.3) BS01 H9D 2.1.1.348 GO:0001510 ... Q86U44 38470714
    805267 8pwa:A (2.1) BS01 I0C 2.1.1.348 GO:0001510 ... Q86U44 38470714
    805268 8pwa:B (2.1) BS01 MG ? N/A Q9HCE5 38470714
    805269 8pwb:A (2.5) BS01 H3I 2.1.1.348 GO:0001510 ... Q86U44 38470714
    805270 8pwn:A (2.4) BS01 TEP ? GO:0001609 ... P0ABE7
    P29274
    37828292
    805271 8pwn:A (2.4) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274
    37828292
    805272 8pwn:A (2.4) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274
    37828292
    805273 8pwn:A (2.4) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274
    37828292
    805274 8px0:A (1.8) BS01 0U 4.6.1.18 GO:0003676 ... P61823 37828292
    805275 8px2:A (1.622) BS01 NUB ? N/A P25440 37967462
    805276 8px8:A (1.603) BS01 I0U ? N/A P25440 37967462
    805277 8px9:A (2.8) BS01 MG ? GO:0005524 ... Q9X2W0 37828292
    805278 8px9:A (2.8) BS02 ANP ? GO:0005524 ... Q9X2W0 37828292
    805279 8px9:A (2.8) BS03 ANP ? GO:0005524 ... Q9X2W0 37828292
    805280 8px9:B (2.8) BS01 ANP ? GO:0005524 ... Q9X2W0 37828292
    805281 8px9:B (2.8) BS02 ANP ? GO:0005524 ... Q9X2W0 37828292
    805282 8px9:B (2.8) BS03 MG ? GO:0005524 ... Q9X2W0 37828292
    805283 8pxa:AAA (1.3) BS01 I0Z ? N/A O60885 37967462
    805284 8pxc:A (1.973) BS01 CA ? N/A F2QF16 37828292
    805285 8pxc:A (1.973) BS02 CA ? N/A F2QF16 37828292
    805286 8pxk:A (3.77) BS01 FAD ? GO:0000166 ... Q52437 37828292
    805287 8pxl:A (1.6) BS01 FAD ? GO:0000166 ... Q52437 37828292
    805288 8pxm:A (2.378) BS01 ZTY ? N/A O60885 37736196
    805289 8pxm:B (2.378) BS01 ZTY ? N/A O60885 37736196
    805290 8pxn:A (1.952) BS01 ZTT ? N/A O60885 37736196
    805291 8pxn:B (1.952) BS01 ZTT ? N/A O60885 37736196
    805292 8pxn:C (1.952) BS01 ZTT ? N/A O60885 37736196
    805293 8pxn:D (1.952) BS01 ZTT ? N/A O60885 37736196
    805294 8pxv:B (2.5) BS01 GAL 3.2.1.52 GO:0004553 ... B2UN02 38684911
    805295 8pxv:C (2.5) BS01 GAL 3.2.1.52 GO:0004553 ... B2UN02 38684911
    805296 8pxx:A (-1.00) BS01 peptide ? GO:0045292 ... O75400 38719828
    805297 8pyh:A (2.2) BS01 ECH ? GO:0009579 ... K9VSN3 37939760
    805298 8pyh:B (2.2) BS01 ECH ? GO:0009579 ... K9VSN3 37939760
    805299 8pyi:AAA (3.06) BS01 IER 2.7.10.1 GO:0004672 ... P08069 N/A
    805300 8pyi:BBB (3.06) BS01 IER 2.7.10.1 GO:0004672 ... P08069 N/A
    805301 8pyi:CCC (3.06) BS01 IER 2.7.10.1 GO:0004672 ... P08069 N/A
    805302 8pyi:DDD (3.06) BS01 IER 2.7.10.1 GO:0004672 ... P08069 N/A
    805303 8pyi:EEE (3.06) BS01 IER 2.7.10.1 GO:0004672 ... P08069 N/A
    805304 8pyi:FFF (3.06) BS01 IER 2.7.10.1 GO:0004672 ... P08069 N/A
    805305 8pyi:GGG (3.06) BS01 IER 2.7.10.1 GO:0004672 ... P08069 N/A
    805306 8pyi:HHH (3.06) BS01 IER 2.7.10.1 GO:0004672 ... P08069 N/A
    805307 8pyj:AAA (2.702) BS01 IEA 2.7.10.1 GO:0004672 ... P08069 N/A
    805308 8pyk:AAA (2.23) BS01 IC2 2.7.10.1 GO:0004672 ... P08069 N/A
    805309 8pyl:AAA (2.93) BS01 IE0 2.7.10.1 GO:0004672 ... P08069 N/A
    805310 8pym:AAA (2.652) BS01 IED 2.7.10.1 GO:0004672 ... P08069 N/A
    805311 8pyn:AAA (1.71) BS01 ICV 2.7.10.1 GO:0004672 ... P08069 N/A
    805312 8pyv:A (1.77) BS01 48T 1.11.1.-
    2.5.1.18
    5.3.99.3
    GO:0001516 ... O14684 37828292
    805313 8pyw:A (1.553) BS01 IF9 2.7.13.3
    2.7.4.6
    GO:0001726 ... P22392 38096103
    805314 8pyw:B (1.553) BS01 IF9 2.7.13.3
    2.7.4.6
    GO:0001726 ... P22392 38096103
    805315 8pyw:C (1.553) BS01 IF9 2.7.13.3
    2.7.4.6
    GO:0001726 ... P22392 38096103
    805316 8pyw:D (1.553) BS01 IF9 2.7.13.3
    2.7.4.6
    GO:0001726 ... P22392 38096103
    805317 8pyw:E (1.553) BS01 IF9 2.7.13.3
    2.7.4.6
    GO:0001726 ... P22392 38096103
    805318 8pyw:F (1.553) BS01 IF9 2.7.13.3
    2.7.4.6
    GO:0001726 ... P22392 38096103
    805319 8pyx:A (2.02) BS01 ADN ? N/A A0A1M5ABR5 38269041
    805320 8pyx:B (2.02) BS01 ADN ? N/A A0A1M5ABR5 38269041
    805321 8pyz:C (2.7) BS01 C8E ? GO:0006811 ... D6QLY1 37828292
    805322 8pyz:E (2.7) BS01 C8E ? GO:0006811 ... D6QLY1 37828292
    805323 8pyz:F (2.7) BS01 C8E ? GO:0006811 ... D6QLY1 37828292
    805324 8pyz:F (2.7) BS02 C8E ? GO:0006811 ... D6QLY1 37828292
    805325 8pz0:A (1.8) BS01 BCT 3.4.11.1
    3.4.11.10
    GO:0004177 ... Q02RY8 37924287
    805326 8pz4:A (1.77) BS01 CA ? GO:0009279 ... P18895 37828292
    805327 8pz4:A (1.77) BS02 CA ? GO:0009279 ... P18895 37828292
    805328 8pz4:A (1.77) BS03 78M ? GO:0009279 ... P18895 37828292
    805329 8pz4:A (1.77) BS04 78M ? GO:0009279 ... P18895 37828292
    805330 8pz4:A (1.77) BS05 78N ? GO:0009279 ... P18895 37828292
    805331 8pz4:A (1.77) BS06 78N ? GO:0009279 ... P18895 37828292
    805332 8pz4:A (1.77) BS07 78N ? GO:0009279 ... P18895 37828292
    805333 8pz5:A (3.2) BS01 FMN ? GO:0000166 ... B8HTZ1 37828292
    805334 8pz5:A (3.2) BS02 FMN ? GO:0000166 ... B8HTZ1 37828292
    805335 8pz5:B (3.2) BS01 FMN ? GO:0000166 ... B8HTZ1 37828292
    805336 8pz5:B (3.2) BS02 FMN ? GO:0000166 ... B8HTZ1 37828292
    805337 8pz6:A (2.9) BS01 peptide ? GO:0003677 ... Q9PTN2 38615411
    805338 8pz6:A (2.9) BS02 IG5 ? GO:0003677 ... Q9PTN2 38615411
    805339 8pz7:A (2.93) BS01 peptide ? GO:0003677 ... Q9PTN2 38615411
    805340 8pz7:A (2.93) BS02 IG0 ? GO:0003677 ... Q9PTN2 38615411
    805341 8pz8:A (2.64) BS01 peptide ? GO:0003677 ... Q9PTN2 38615411
    805342 8pz8:A (2.64) BS02 IFU ? GO:0003677 ... Q9PTN2 38615411
    805343 8pz9:A (2.74) BS01 peptide ? GO:0003677 ... Q9PTN2 38615411
    805344 8pz9:A (2.74) BS02 IFK ? GO:0003677 ... Q9PTN2 38615411
    805345 8pzb:A (2.73) BS01 peptide ? GO:0003677 ... Q9PTN2 38615411
    805346 8pzb:A (2.73) BS02 I72 ? GO:0003677 ... Q9PTN2 38615411
    805347 8pzh:A (2.02) BS01 MN ? N/A F9UT68 N/A
    805348 8pzk:A (1.8) BS01 ECH ? GO:0009579 ... K9XH36 37939760
    805349 8pzk:A (1.8) BS02 AZI ? GO:0009579 ... K9XH36 37939760
    805350 8pzk:A (1.8) BS03 AZI ? GO:0009579 ... K9XH36 37939760
    805351 8pzk:A (1.8) BS04 AZI ? GO:0009579 ... K9XH36 37939760
    805352 8pzm:A (1.7) BS01 BES 3.4.11.1
    3.4.11.10
    GO:0004177 ... Q02RY8 37924287
    805353 8pzm:A (1.7) BS02 BCT 3.4.11.1
    3.4.11.10
    GO:0004177 ... Q02RY8 37924287
    805354 8pzm:A (1.7) BS03 MN 3.4.11.1
    3.4.11.10
    GO:0004177 ... Q02RY8 37924287
    805355 8pzm:A (1.7) BS04 MN 3.4.11.1
    3.4.11.10
    GO:0004177 ... Q02RY8 37924287
    805356 8pzp:A (8.7) BS01 rna ? GO:0003723 ... A0A2Z5UJ33 38100595
    805357 8pzq:A (5.3) BS01 rna ? GO:0003723 ... A0A2Z5UJ33 38100595
    805358 8pzq:A (5.3) BS02 rna ? GO:0003723 ... A0A2Z5UJ33 38100595
    805359 8pzq:B (5.3) BS01 rna ? GO:0003723 ... A0A2Z5UJ33 38100595
    805360 8pzq:C (5.3) BS01 rna ? GO:0003723 ... A0A2Z5UJ33 38100595
    805361 8pzy:A (1.97) BS01 BCT 3.4.11.1
    3.4.11.10
    GO:0004177 ... Q02RY8 37924287
    805362 8pzy:A (1.97) BS02 MN 3.4.11.1
    3.4.11.10
    GO:0004177 ... Q02RY8 37924287
    805363 8pzy:A (1.97) BS03 MN 3.4.11.1
    3.4.11.10
    GO:0004177 ... Q02RY8 37924287
    805364 8pzy:B (1.97) BS01 BCT 3.4.11.1
    3.4.11.10
    GO:0004177 ... Q02RY8 37924287
    805365 8pzy:B (1.97) BS02 MN 3.4.11.1
    3.4.11.10
    GO:0004177 ... Q02RY8 37924287
    805366 8pzy:B (1.97) BS03 MN 3.4.11.1
    3.4.11.10
    GO:0004177 ... Q02RY8 37924287
    805367 8pzy:C (1.97) BS01 BCT 3.4.11.1
    3.4.11.10
    GO:0004177 ... Q02RY8 37924287
    805368 8pzy:C (1.97) BS02 MN 3.4.11.1
    3.4.11.10
    GO:0004177 ... Q02RY8 37924287
    805369 8pzy:C (1.97) BS03 MN 3.4.11.1
    3.4.11.10
    GO:0004177 ... Q02RY8 37924287
    805370 8pzy:D (1.97) BS01 BCT 3.4.11.1
    3.4.11.10
    GO:0004177 ... Q02RY8 37924287
    805371 8pzy:D (1.97) BS02 MN 3.4.11.1
    3.4.11.10
    GO:0004177 ... Q02RY8 37924287
    805372 8pzy:D (1.97) BS03 MN 3.4.11.1
    3.4.11.10
    GO:0004177 ... Q02RY8 37924287
    805373 8pzy:E (1.97) BS01 BCT 3.4.11.1
    3.4.11.10
    GO:0004177 ... Q02RY8 37924287
    805374 8pzy:E (1.97) BS02 MN 3.4.11.1
    3.4.11.10
    GO:0004177 ... Q02RY8 37924287
    805375 8pzy:E (1.97) BS03 MN 3.4.11.1
    3.4.11.10
    GO:0004177 ... Q02RY8 37924287
    805376 8pzy:F (1.97) BS01 BCT 3.4.11.1
    3.4.11.10
    GO:0004177 ... Q02RY8 37924287
    805377 8pzy:F (1.97) BS02 P03 3.4.11.1
    3.4.11.10
    GO:0004177 ... Q02RY8 37924287
    805378 8pzy:F (1.97) BS03 MN 3.4.11.1
    3.4.11.10
    GO:0004177 ... Q02RY8 37924287
    805379 8pzy:F (1.97) BS04 MN 3.4.11.1
    3.4.11.10
    GO:0004177 ... Q02RY8 37924287
    805380 8q0a:B (3.1) BS01 SF4 7.1.1.2 GO:0003954 ... P42026 38870289
    805381 8q0a:D (3.1) BS01 SF4 7.1.1.2 GO:0003954 ... P17694 38870289
    805382 8q0a:E (3.1) BS01 FES 7.1.1.2 GO:0003954 ... P04394 38870289
    805383 8q0a:F (3.1) BS01 FMN 7.1.1.2 GO:0005739 ... P25708 38870289
    805384 8q0a:F (3.1) BS02 SF4 7.1.1.2 GO:0005739 ... P25708 38870289
    805385 8q0a:G (3.1) BS01 SF4 7.1.1.2 GO:0005739 ... P15690 38870289
    805386 8q0a:G (3.1) BS02 SF4 7.1.1.2 GO:0005739 ... P15690 38870289
    805387 8q0a:G (3.1) BS03 FES 7.1.1.2 GO:0005739 ... P15690 38870289
    805388 8q0a:I (3.1) BS01 SF4 7.1.1.2 GO:0003954 ... P42028 38870289
    805389 8q0a:I (3.1) BS02 SF4 7.1.1.2 GO:0003954 ... P42028 38870289
    805390 8q0a:M (3.1) BS01 ZN 7.1.1.2 GO:0003954 ... P03910 38870289
    805391 8q0a:O (3.1) BS01 DGT ? GO:0005737 ... P34942 38870289
    805392 8q0a:P (3.1) BS01 NDP ? GO:0005739 ... P34943 38870289
    805393 8q0a:R (3.1) BS01 ZN ? GO:0005739 ... P23934 38870289
    805394 8q0a:T (3.1) BS01 EHZ ? GO:0000035 ... P52505 38870289
    805395 8q0a:U (3.1) BS01 EHZ ? GO:0000035 ... P52505 38870289
    805396 8q0a:W (3.1) BS01 EHZ ? GO:0005739 ... Q02366 38870289
    805397 8q0a:n (3.1) BS01 EHZ ? GO:0005739 ... Q02369 38870289
    805398 8q0c:A (1.3) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 38358125
    805399 8q0f:B (3.1) BS01 SF4 7.1.1.2 GO:0003954 ... P42026 38870289
    805400 8q0f:D (3.1) BS01 SF4 7.1.1.2 GO:0003954 ... P17694 38870289

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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