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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    802801 8ph8:AAA (1.29) BS01 ZJO 3.2.1.17 GO:0003796 ... P00698 37660867
    802802 8ph9:I (3.0) BS01 rna 2.7.7.6 GO:0000345 ... P0A8V2 38589445
    802803 8ph9:I (3.0) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 38589445
    802804 8ph9:I (3.0) BS03 dna 2.7.7.6 GO:0000345 ... P0A8V2 38589445
    802805 8ph9:J (3.0) BS01 rna 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    802806 8ph9:J (3.0) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    802807 8ph9:J (3.0) BS03 dna 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    802808 8ph9:J (3.0) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    802809 8ph9:J (3.0) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    802810 8ph9:J (3.0) BS06 MG 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    802811 8pha:A (2.02) BS01 ORN ? GO:0008168 ... A0A067NAT9 38462720
    802812 8pha:B (2.02) BS01 ORN ? GO:0008168 ... A0A067NAT9 38462720
    802813 8phd:A (2.08) BS01 ATP ? GO:0000287 ... O75794 37507029
    802814 8phd:A (2.08) BS02 MG ? GO:0000287 ... O75794 37507029
    802815 8phd:C (2.08) BS01 ATP ? GO:0000287 ... O75794 37507029
    802816 8phd:C (2.08) BS02 MG ? GO:0000287 ... O75794 37507029
    802817 8phe:A (3.1) BS01 peptide 1.3.8.- GO:0001676 ... Q9H845 38086790
    802818 8phe:A (3.1) BS02 peptide 1.3.8.- GO:0001676 ... Q9H845 38086790
    802819 8phe:B (3.1) BS01 peptide 1.3.8.- GO:0001676 ... Q9H845 38086790
    802820 8phe:B (3.1) BS02 peptide 1.3.8.- GO:0001676 ... Q9H845 38086790
    802821 8phf:A (3.6) BS01 FAD 1.3.8.- GO:0001676 ... Q9H845 38086790
    802822 8phf:A (3.6) BS02 FAD 1.3.8.- GO:0001676 ... Q9H845 38086790
    802823 8phf:B (3.6) BS01 FAD 1.3.8.- GO:0001676 ... Q9H845 38086790
    802824 8phf:B (3.6) BS02 FAD 1.3.8.- GO:0001676 ... Q9H845 38086790
    802825 8phi:F (2.289) BS01 336 ? GO:0019064 ... P03420 38332002
    802826 8phi:F (2.289) BS02 CA ? GO:0019064 ... P03420 38332002
    802827 8phj:0 (3.67) BS01 rna ? GO:0000027 ... P0A7N9 38033086
    802828 8phj:1 (3.67) BS01 rna ? GO:0002181 ... P0A7P5 38033086
    802829 8phj:2 (3.67) BS01 rna ? GO:0002181 ... P0A7Q1 38033086
    802830 8phj:3 (3.67) BS01 rna ? GO:0002181 ... P0A7Q6 38033086
    802831 8phj:3 (3.67) BS02 ZN ? GO:0002181 ... P0A7Q6 38033086
    802832 8phj:4 (3.67) BS01 rna ? GO:0002181 ... P0A7M9 38033086
    802833 8phj:4 (3.67) BS02 rna ? GO:0002181 ... P0A7M9 38033086
    802834 8phj:4 (3.67) BS03 ZN ? GO:0002181 ... P0A7M9 38033086
    802835 8phj:5 (3.67) BS01 rna ? GO:0002181 ... P0A7J3 38033086
    802836 8phj:6 (3.67) BS01 rna ? GO:0000027 ... P0A7J7 38033086
    802837 8phj:B (3.67) BS01 rna ? GO:0000028 ... P0A7V0 38033086
    802838 8phj:C (3.67) BS01 rna ? GO:0000028 ... P0A7V3 38033086
    802839 8phj:D (3.67) BS01 rna ? GO:0000028 ... P0A7V8 38033086
    802840 8phj:E (3.67) BS01 rna ? GO:0000028 ... P0A7W1 38033086
    802841 8phj:F (3.67) BS01 rna ? GO:0002181 ... P02358 38033086
    802842 8phj:G (3.67) BS01 rna ? GO:0000028 ... P02359 38033086
    802843 8phj:G (3.67) BS02 rna ? GO:0000028 ... P02359 38033086
    802844 8phj:H (3.67) BS01 rna ? GO:0000028 ... P0A7W7 38033086
    802845 8phj:I (3.67) BS01 rna ? GO:0000049 ... P0A7X3 38033086
    802846 8phj:J (3.67) BS01 rna ? GO:0000049 ... P0A7R5 38033086
    802847 8phj:K (3.67) BS01 rna ? GO:0002181 ... P0A7R9 38033086
    802848 8phj:L (3.67) BS01 rna ? GO:0000049 ... P0A7S3 38033086
    802849 8phj:M (3.67) BS01 rna ? GO:0000049 ... P0A7S9 38033086
    802850 8phj:M (3.67) BS02 rna ? GO:0000049 ... P0A7S9 38033086
    802851 8phj:N (3.67) BS01 rna ? GO:0000028 ... P0AG59 38033086
    802852 8phj:O (3.67) BS01 rna ? GO:0000028 ... P0ADZ4 38033086
    802853 8phj:O (3.67) BS02 rna ? GO:0000028 ... P0ADZ4 38033086
    802854 8phj:P (3.67) BS01 rna ? GO:0000028 ... P0A7T3 38033086
    802855 8phj:Q (3.67) BS01 rna ? GO:0000028 ... P0AG63 38033086
    802856 8phj:R (3.67) BS01 rna ? GO:0002181 ... P0A7T7 38033086
    802857 8phj:S (3.67) BS01 rna ? GO:0000028 ... P0A7U3 38033086
    802858 8phj:T (3.67) BS01 rna ? GO:0000028 ... P0A7U7 38033086
    802859 8phj:U (3.67) BS01 rna ? GO:0000028 ... P68679 38033086
    802860 8phj:X (3.67) BS01 rna ? N/A D3RW14 38033086
    802861 8phj:X (3.67) BS02 rna ? N/A D3RW14 38033086
    802862 8phj:Y (3.67) BS01 rna ? N/A D3RW14 38033086
    802863 8phj:Y (3.67) BS02 rna ? N/A D3RW14 38033086
    802864 8phj:c (3.67) BS01 rna ? GO:0000027 ... P60422 38033086
    802865 8phj:d (3.67) BS01 rna ? GO:0000027 ... P60438 38033086
    802866 8phj:e (3.67) BS01 rna ? GO:0001070 ... P60723 38033086
    802867 8phj:f (3.67) BS01 rna ? GO:0000027 ... P62399 38033086
    802868 8phj:f (3.67) BS02 rna ? GO:0000027 ... P62399 38033086
    802869 8phj:f (3.67) BS03 rna ? GO:0000027 ... P62399 38033086
    802870 8phj:g (3.67) BS01 rna ? GO:0000027 ... P0AG55 38033086
    802871 8phj:h (3.67) BS01 rna ? GO:0002181 ... P0A7R1 38033086
    802872 8phj:i (3.67) BS01 rna ? GO:0002181 ... P0AA10 38033086
    802873 8phj:j (3.67) BS01 rna ? GO:0002181 ... P0ADY3 38033086
    802874 8phj:j (3.67) BS02 rna ? GO:0002181 ... P0ADY3 38033086
    802875 8phj:k (3.67) BS01 rna ? GO:0002181 ... P02413 38033086
    802876 8phj:l (3.67) BS01 rna ? GO:0000027 ... P0ADY7 38033086
    802877 8phj:m (3.67) BS01 rna ? GO:0000027 ... P0AG44 38033086
    802878 8phj:n (3.67) BS01 rna ? GO:0002181 ... P0C018 38033086
    802879 8phj:n (3.67) BS02 rna ? GO:0002181 ... P0C018 38033086
    802880 8phj:o (3.67) BS01 rna ? GO:0000027 ... P0A7K6 38033086
    802881 8phj:o (3.67) BS02 rna ? GO:0000027 ... P0A7K6 38033086
    802882 8phj:p (3.67) BS01 rna ? GO:0000027 ... P0A7L3 38033086
    802883 8phj:q (3.67) BS01 rna ? GO:0002181 ... P0AG48 38033086
    802884 8phj:r (3.67) BS01 rna ? GO:0002181 ... P61175 38033086
    802885 8phj:s (3.67) BS01 rna ? GO:0000027 ... P0ADZ0 38033086
    802886 8phj:t (3.67) BS01 rna ? GO:0000027 ... P60624 38033086
    802887 8phj:u (3.67) BS01 rna ? GO:0000027 ... P68919 38033086
    802888 8phj:v (3.67) BS01 rna ? GO:0000027 ... P0A7L8 38033086
    802889 8phj:v (3.67) BS02 rna ? GO:0000027 ... P0A7L8 38033086
    802890 8phj:w (3.67) BS01 rna ? GO:0000027 ... P0A7M2 38033086
    802891 8phj:x (3.67) BS01 rna ? GO:0000027 ... P0A7M6 38033086
    802892 8phj:y (3.67) BS01 rna ? GO:0000027 ... P0AG51 38033086
    802893 8phj:z (3.67) BS01 rna ? GO:0000027 ... P0A7N4 38033086
    802894 8phk:I (3.1) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 38589445
    802895 8phk:I (3.1) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 38589445
    802896 8phk:I (3.1) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 38589445
    802897 8phk:J (3.1) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    802898 8phk:J (3.1) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    802899 8phk:J (3.1) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    802900 8phk:J (3.1) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    802901 8phk:J (3.1) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    802902 8phk:J (3.1) BS06 MG 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    802903 8phk:P (3.1) BS01 dna ? GO:0001000 ... P0AFW0 38589445
    802904 8phl:A (1.3) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 38358125
    802905 8phv:A (1.97) BS01 ATP ? GO:0000287 ... O75794 37507029
    802906 8phv:C (1.97) BS01 ATP ? GO:0000287 ... O75794 37507029
    802907 8phw:A (3.6) BS01 FY5 ? GO:0005886 ... Q9Y6L6 37723174
    802908 8pi1:A (2.5) BS01 ZIZ 1.-.-.-
    3.1.1.2    		 GO:0003824 ... P22862 38344167
    802909 8pi1:B (2.5) BS01 ZIZ 1.-.-.-
    3.1.1.2    		 GO:0003824 ... P22862 38344167
    802910 8pi1:C (2.5) BS01 ZIZ 1.-.-.-
    3.1.1.2    		 GO:0003824 ... P22862 38344167
    802911 8pi1:D (2.5) BS01 ZIZ 1.-.-.-
    3.1.1.2    		 GO:0003824 ... P22862 38344167
    802912 8pi1:E (2.5) BS01 ZIZ 1.-.-.-
    3.1.1.2    		 GO:0003824 ... P22862 38344167
    802913 8pi1:F (2.5) BS01 ZIZ 1.-.-.-
    3.1.1.2    		 GO:0003824 ... P22862 38344167
    802914 8pi1:G (2.5) BS01 ZIZ 1.-.-.-
    3.1.1.2    		 GO:0003824 ... P22862 38344167
    802915 8pi1:H (2.5) BS01 ZIZ 1.-.-.-
    3.1.1.2    		 GO:0003824 ... P22862 38344167
    802916 8pi1:I (2.5) BS01 ZIZ 1.-.-.-
    3.1.1.2    		 GO:0003824 ... P22862 38344167
    802917 8pi1:J (2.5) BS01 ZIZ 1.-.-.-
    3.1.1.2    		 GO:0003824 ... P22862 38344167
    802918 8pi1:K (2.5) BS01 ZIZ 1.-.-.-
    3.1.1.2    		 GO:0003824 ... P22862 38344167
    802919 8pi1:M (2.5) BS01 ZIZ 1.-.-.-
    3.1.1.2    		 GO:0003824 ... P22862 38344167
    802920 8pi1:N (2.5) BS01 ZIZ 1.-.-.-
    3.1.1.2    		 GO:0003824 ... P22862 38344167
    802921 8pi1:O (2.5) BS01 ZIZ 1.-.-.-
    3.1.1.2    		 GO:0003824 ... P22862 38344167
    802922 8pi2:A (1.48) BS01 GLY ? GO:0002020 ... P01009 N/A
    802923 8pi3:A (1.73) BS01 peptide 3.4.22.27 N/A P25774 38811854
    802924 8pi5:D (1.66) BS01 RCO ? GO:0005179 ... P01308 37880066
    802925 8pib:I (2.6) BS01 rna 2.7.7.6 GO:0000345 ... P0A8V2 38589445
    802926 8pib:I (2.6) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 38589445
    802927 8pib:I (2.6) BS03 dna 2.7.7.6 GO:0000345 ... P0A8V2 38589445
    802928 8pib:J (2.6) BS01 rna 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    802929 8pib:J (2.6) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    802930 8pib:J (2.6) BS03 dna 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    802931 8pib:J (2.6) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    802932 8pib:J (2.6) BS05 MG 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    802933 8pib:P (2.6) BS01 dna ? GO:0001000 ... P0AFW0 38589445
    802934 8pib:P (2.6) BS02 dna ? GO:0001000 ... P0AFW0 38589445
    802935 8pid:I (3.0) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 38589445
    802936 8pid:I (3.0) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 38589445
    802937 8pid:I (3.0) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 38589445
    802938 8pid:J (3.0) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    802939 8pid:J (3.0) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    802940 8pid:J (3.0) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    802941 8pid:J (3.0) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    802942 8pid:J (3.0) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    802943 8pid:J (3.0) BS06 MG 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    802944 8pid:P (3.0) BS01 dna ? GO:0001000 ... P0AFW0 38589445
    802945 8pid:P (3.0) BS02 dna ? GO:0001000 ... P0AFW0 38589445
    802946 8pif:A (1.782) BS01 YW6 ? N/A Q9Y2U9 N/A
    802947 8pif:B (1.782) BS01 YW6 ? N/A Q9Y2U9 N/A
    802948 8pij:A (2.9) BS01 G3P ? GO:0007155 ... A0A9K2KM41 38499587
    802949 8pij:A (2.9) BS02 WKE ? GO:0007155 ... A0A9K2KM41 38499587
    802950 8pil:I (3.2) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 38589445
    802951 8pil:I (3.2) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 38589445
    802952 8pil:I (3.2) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 38589445
    802953 8pil:J (3.2) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    802954 8pil:J (3.2) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    802955 8pil:J (3.2) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    802956 8pil:J (3.2) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    802957 8pil:J (3.2) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    802958 8pil:J (3.2) BS06 MG 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    802959 8pil:P (3.2) BS01 dna ? GO:0001000 ... P0AFW0 38589445
    802960 8pil:P (3.2) BS02 dna ? GO:0001000 ... P0AFW0 38589445
    802961 8pim:I (3.4) BS01 rna 2.7.7.6 GO:0000345 ... P0A8V2 38589445
    802962 8pim:I (3.4) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 38589445
    802963 8pim:I (3.4) BS03 dna 2.7.7.6 GO:0000345 ... P0A8V2 38589445
    802964 8pim:J (3.4) BS01 rna 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    802965 8pim:J (3.4) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    802966 8pim:J (3.4) BS03 dna 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    802967 8pim:J (3.4) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    802968 8pim:J (3.4) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    802969 8pim:J (3.4) BS06 MG 2.7.7.6 GO:0000287 ... P0A8T7 38589445
    802970 8pim:P (3.4) BS01 dna ? GO:0001000 ... P0AFW0 38589445
    802971 8pim:P (3.4) BS02 dna ? GO:0001000 ... P0AFW0 38589445
    802972 8piq:A (1.117) BS01 ZHO ? N/A O60885 N/A
    802973 8piz:A (2.75) BS01 G3P ? GO:0007155 ... A0A9K2KM41 38499587
    802974 8piz:A (2.75) BS02 B6D ? GO:0007155 ... A0A9K2KM41 38499587
    802975 8pj0:A (1.7) BS01 ZHX 2.3.1.179 GO:0004315 ... O54440 38665834
    802976 8pj0:B (1.7) BS01 ZHX 2.3.1.179 GO:0004315 ... O54440 38665834
    802977 8pj0:C (1.7) BS01 ZHX 2.3.1.179 GO:0004315 ... O54440 38665834
    802978 8pj0:D (1.7) BS01 ZHX 2.3.1.179 GO:0004315 ... O54440 38665834
    802979 8pj7:A (1.26) BS01 ZJ9 ? GO:0006355 ... P42568 37944866
    802980 8pj8:A (1.5) BS01 GY1 5.2.1.8 GO:0003755 ... Q13451 38559286
    802981 8pja:A (1.6) BS01 GY1 5.2.1.8 GO:0003755 ... Q13451 38559286
    802982 8pjb:A (3.62) BS01 rna 3.6.4.13 GO:0000228 ... P24785 37989319
    802983 8pjb:A (3.62) BS02 ADP 3.6.4.13 GO:0000228 ... P24785 37989319
    802984 8pji:A (1.7) BS01 ZJF ? GO:0006355 ... Q03111 37944866
    802985 8pjj:A (4.24) BS01 rna 3.6.4.13 GO:0000228 ... P24785 37989319
    802986 8pjj:A (4.24) BS02 ADP 3.6.4.13 GO:0000228 ... P24785 37989319
    802987 8pjk:A (2.4) BS01 T7M ? GO:0000287 ... P63096 N/A
    802988 8pjk:R (2.4) BS01 CLR ? GO:0001586 ... P08908 N/A
    802989 8pjk:R (2.4) BS02 CLR ? GO:0001586 ... P08908 N/A
    802990 8pjk:R (2.4) BS03 ZL9 ? GO:0001586 ... P08908 N/A
    802991 8pjk:R (2.4) BS04 T7M ? GO:0001586 ... P08908 N/A
    802992 8pjm:AAAA (1.44) BS01 ZJ5 3.5.2.6 GO:0016787 ... Q9K2N0 N/A
    802993 8pjm:AAAA (1.44) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 N/A
    802994 8pjm:AAAA (1.44) BS03 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 N/A
    802995 8pjn:b (3.4) BS01 ZN 2.3.2.27 GO:0000151 ... Q9H871 38113892
    802996 8pjp:A (2.92) BS01 WKE ? GO:0007155 ... A0A9K2KM41 38499587
    802997 8pk0:0 (3.03) BS01 rna ? GO:0003723 ... Q9BYC8 38042949
    802998 8pk0:0 (3.03) BS02 ZN ? GO:0003723 ... Q9BYC8 38042949
    802999 8pk0:1 (3.03) BS01 rna ? GO:0003735 ... O75394 38042949
    803000 8pk0:2 (3.03) BS01 rna ? GO:0003735 ... Q9BQ48 38042949
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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