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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    7201 1d9k:C (3.2) BS01 peptide ? GO:0006955 ... P01910 10583947
    7202 1d9k:D (3.2) BS01 peptide ? GO:0006955 ... P06343 10583947
    7203 1d9k:E (3.2) BS01 peptide ? N/A P01739 10583947
    7204 1d9k:G (3.2) BS01 peptide ? GO:0006955 ... P01910 10583947
    7205 1d9k:H (3.2) BS01 peptide ? GO:0006955 ... P06343 10583947
    7206 1d9v:A (1.75) BS01 PO4 ? GO:0006826 ... P35755 11747438
    7207 1d9y:A (2.2) BS01 FE ? GO:0006826 ... Q50964 N/A
    7208 1d9z:A (3.15) BS01 ATP ? GO:0003677 ... P56981 10601012
    7209 1daa:A (1.94) BS01 PLP 2.6.1.21 GO:0003824 ... P19938 7626635
    7210 1daa:B (1.94) BS01 PLP 2.6.1.21 GO:0003824 ... P19938 7626635
    7211 1dad:A (1.6) BS01 ADP 6.3.3.3 GO:0000287 ... P13000 7669756
    7212 1dae:A (1.7) BS01 IKT 6.3.3.3 GO:0000287 ... P13000 7669756
    7213 1daf:A (1.7) BS01 DSD 6.3.3.3 GO:0000287 ... P13000 7669756
    7214 1daf:A (1.7) BS02 ADP 6.3.3.3 GO:0000287 ... P13000 7669756
    7215 1dag:A (1.64) BS01 DSD 6.3.3.3 GO:0000287 ... P13000 7669756
    7216 1dag:A (1.64) BS02 ACP 6.3.3.3 GO:0000287 ... P13000 7669756
    7217 1dah:A (1.64) BS01 MN 6.3.3.3 GO:0000287 ... P13000 7669756
    7218 1dah:A (1.64) BS02 DNN 6.3.3.3 GO:0000287 ... P13000 7669756
    7219 1dah:A (1.64) BS03 ACP 6.3.3.3 GO:0000287 ... P13000 7669756
    7220 1dai:A (1.64) BS01 DSD 6.3.3.3 GO:0000287 ... P13000 7669756
    7221 1daj:A (2.3) BS01 NDP 1.5.1.3 GO:0004146 ... P16184 15299851
    7222 1daj:A (2.3) BS02 MOT 1.5.1.3 GO:0004146 ... P16184 15299851 MOAD: Ki=6.5nM
    7223 1dak:A (1.6) BS01 MG 6.3.3.3 GO:0000287 ... P13000 9576910
    7224 1dak:A (1.6) BS02 DPU 6.3.3.3 GO:0000287 ... P13000 9576910
    7225 1dak:A (1.6) BS03 ADP 6.3.3.3 GO:0000287 ... P13000 9576910
    7226 1dam:A (1.8) BS01 MG 6.3.3.3 GO:0000287 ... P13000 9865950
    7227 1dam:A (1.8) BS02 PO4 6.3.3.3 GO:0000287 ... P13000 9865950
    7228 1dam:A (1.8) BS03 ADP 6.3.3.3 GO:0000287 ... P13000 9865950
    7229 1dam:A (1.8) BS04 DTB 6.3.3.3 GO:0000287 ... P13000 9865950
    7230 1dan:H (2.0) BS01 0Z6 3.4.21.21 GO:0004252 ... P08709 8598903
    7231 1dan:H (2.0) BS02 CA 3.4.21.21 GO:0004252 ... P08709 8598903
    7232 1dan:L (2.0) BS01 BGC 3.4.21.21 GO:0005509 ... P08709 8598903
    7233 1dan:L (2.0) BS02 CA 3.4.21.21 GO:0005509 ... P08709 8598903
    7234 1dan:L (2.0) BS03 CA 3.4.21.21 GO:0005509 ... P08709 8598903
    7235 1dan:L (2.0) BS04 CA 3.4.21.21 GO:0005509 ... P08709 8598903
    7236 1dan:L (2.0) BS05 CA 3.4.21.21 GO:0005509 ... P08709 8598903
    7237 1dan:L (2.0) BS06 CA 3.4.21.21 GO:0005509 ... P08709 8598903
    7238 1dan:L (2.0) BS07 CA 3.4.21.21 GO:0005509 ... P08709 8598903
    7239 1dan:L (2.0) BS08 CA 3.4.21.21 GO:0005509 ... P08709 8598903
    7240 1dao:A (3.2) BS01 FAB 1.4.3.3 GO:0003884 ... P00371 9153426
    7241 1dao:B (3.2) BS01 FAB 1.4.3.3 GO:0003884 ... P00371 9153426
    7242 1dao:C (3.2) BS01 FAB 1.4.3.3 GO:0003884 ... P00371 9153426
    7243 1dao:D (3.2) BS01 FAB 1.4.3.3 GO:0003884 ... P00371 9153426
    7244 1dao:E (3.2) BS01 FAB 1.4.3.3 GO:0003884 ... P00371 9153426
    7245 1dao:F (3.2) BS01 FAB 1.4.3.3 GO:0003884 ... P00371 9153426
    7246 1dao:G (3.2) BS01 FAB 1.4.3.3 GO:0003884 ... P00371 9153426
    7247 1dao:H (3.2) BS01 FAB 1.4.3.3 GO:0003884 ... P00371 9153426
    7248 1dap:A (2.2) BS01 NDP 1.4.1.16 GO:0009085 ... P04964 8885833
    7249 1dap:B (2.2) BS01 ACT 1.4.1.16 GO:0009085 ... P04964 8885833
    7250 1dap:B (2.2) BS02 NDP 1.4.1.16 GO:0009085 ... P04964 8885833
    7251 1daq:A (-1.00) BS01 CA 3.2.1.176 GO:0000272 ... P0C2S5 11273698
    7252 1daq:A (-1.00) BS02 CA 3.2.1.176 GO:0000272 ... P0C2S5 11273698
    7253 1dar:A (2.4) BS01 GDP ? GO:0003746 ... Q5SHN5 8736554 MOAD: Kd=11uM
    PDBbind: -logKd/Ki=4.96, Kd=11uM
    7254 1dav:A (-1.00) BS01 CA 3.2.1.176 GO:0000272 ... P0C2S5 11273698
    7255 1dav:A (-1.00) BS02 CA 3.2.1.176 GO:0000272 ... P0C2S5 11273698
    7256 1daw:A (2.2) BS01 MG 2.7.11.1 GO:0004672 ... P28523 10581548
    7257 1daw:A (2.2) BS02 ANP 2.7.11.1 GO:0004672 ... P28523 10581548
    7258 1dax:A (-1.00) BS01 SF4 ? GO:0005506 ... P00210 9533888
    7259 1day:A (2.2) BS01 MG 2.7.11.1 GO:0004672 ... P28523 10581548
    7260 1day:A (2.2) BS02 GNP 2.7.11.1 GO:0004672 ... P28523 10581548
    7261 1daz:C (1.55) BS01 0Q4 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03367 10429209
    7262 1daz:D (1.55) BS01 0Q4 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03367 10429209
    7263 1db1:A (1.8) BS01 VDX ? GO:0003677 ... P11473 10678179 MOAD: Kd=0.55nM
    PDBbind: -logKd/Ki=9.26, Kd=0.55nM
    BindingDB: EC50=10nM, IC50=1.1nM, Kd=0.065nM
    7264 1db4:A (2.2) BS01 CA 3.1.1.4 GO:0004623 ... P14555 7664108
    7265 1db4:A (2.2) BS02 CA 3.1.1.4 GO:0004623 ... P14555 7664108
    7266 1db4:A (2.2) BS03 8IN 3.1.1.4 GO:0004623 ... P14555 7664108 PDBbind: -logKd/Ki=7.24, IC50=0.057uM
    BindingDB: IC50=57.0nM
    7267 1db5:A (2.8) BS01 CA 3.1.1.4 GO:0004623 ... P14555 7664108
    7268 1db5:A (2.8) BS02 CA 3.1.1.4 GO:0004623 ... P14555 7664108
    7269 1db5:A (2.8) BS03 6IN 3.1.1.4 GO:0004623 ... P14555 7664108 PDBbind: -logKd/Ki=6.82, IC50=0.152uM
    BindingDB: IC50=69000nM
    7270 1dbb:H (2.7) BS01 STR ? N/A P01868 8496956 PDBbind: -logKd/Ki=9.00, Kd=1nM
    7271 1dbf:A (1.3) BS01 SO4 5.4.99.5 GO:0004106 ... P19080 10818343
    7272 1dbf:A (1.3) BS02 SO4 5.4.99.5 GO:0004106 ... P19080 10818343
    7273 1dbf:A (1.3) BS03 GOL 5.4.99.5 GO:0004106 ... P19080 10818343
    7274 1dbf:A (1.3) BS04 GOL 5.4.99.5 GO:0004106 ... P19080 10818343
    7275 1dbf:A (1.3) BS05 GOL 5.4.99.5 GO:0004106 ... P19080 10818343
    7276 1dbf:A (1.3) BS06 SO4 5.4.99.5 GO:0004106 ... P19080 10818343
    7277 1dbf:B (1.3) BS01 SO4 5.4.99.5 GO:0004106 ... P19080 10818343
    7278 1dbf:B (1.3) BS02 SO4 5.4.99.5 GO:0004106 ... P19080 10818343
    7279 1dbf:B (1.3) BS03 SO4 5.4.99.5 GO:0004106 ... P19080 10818343
    7280 1dbf:B (1.3) BS04 GOL 5.4.99.5 GO:0004106 ... P19080 10818343
    7281 1dbf:C (1.3) BS01 SO4 5.4.99.5 GO:0004106 ... P19080 10818343
    7282 1dbf:C (1.3) BS02 SO4 5.4.99.5 GO:0004106 ... P19080 10818343
    7283 1dbf:C (1.3) BS03 GOL 5.4.99.5 GO:0004106 ... P19080 10818343
    7284 1dbg:A (1.7) BS01 MAN 4.2.2.19 N/A Q46079 10600383
    7285 1dbi:A (1.8) BS01 CA 3.4.21.- GO:0004252 ... Q45670 10588904
    7286 1dbi:A (1.8) BS02 CA 3.4.21.- GO:0004252 ... Q45670 10588904
    7287 1dbi:A (1.8) BS03 CA 3.4.21.- GO:0004252 ... Q45670 10588904
    7288 1dbj:H (2.7) BS01 AE2 ? N/A P01868 8413674 PDBbind: -logKd/Ki=7.68, IC50=21nM
    7289 1dbk:H (3.0) BS01 ANO ? N/A P01868 8413674 PDBbind: -logKd/Ki=8.10, IC50=8nM
    7290 1dbm:H (2.7) BS01 SIH ? N/A P01868 8413674
    7291 1dbn:A (2.75) BS01 BGC ? GO:0030246 ... P93248 10747930
    7292 1dbn:A (2.75) BS02 GAL ? GO:0030246 ... P93248 10747930
    7293 1dbn:A (2.75) BS03 SIA ? GO:0030246 ... P93248 10747930
    7294 1dbn:A (2.75) BS04 CA ? GO:0030246 ... P93248 10747930
    7295 1dbn:A (2.75) BS05 MN ? GO:0030246 ... P93248 10747930
    7296 1dbn:B (2.75) BS01 BGC ? GO:0030246 ... P93248 10747930
    7297 1dbn:B (2.75) BS02 GAL ? GO:0030246 ... P93248 10747930
    7298 1dbn:B (2.75) BS03 SIA ? GO:0030246 ... P93248 10747930
    7299 1dbn:B (2.75) BS04 CA ? GO:0030246 ... P93248 10747930
    7300 1dbn:B (2.75) BS05 MN ? GO:0030246 ... P93248 10747930
    7301 1dbo:A (1.7) BS01 MAN 4.2.2.19 N/A Q46079 10600383
    7302 1dbo:A (1.7) BS02 ASG 4.2.2.19 N/A Q46079 10600383
    7303 1dbo:A (1.7) BS03 GC4 4.2.2.19 N/A Q46079 10600383
    7304 1dbp:A (2.2) BS01 RIP ? GO:0005515 ... P02925 8157648
    7305 1dbr:A (2.4) BS01 MG 2.4.2.22
    2.4.2.8
    GO:0000166 ... Q26997 8836106
    7306 1dbr:B (2.4) BS01 MG 2.4.2.22
    2.4.2.8
    GO:0000166 ... Q26997 8836106
    7307 1dbr:D (2.4) BS01 MG 2.4.2.22
    2.4.2.8
    GO:0000166 ... Q26997 8836106
    7308 1dbt:A (2.4) BS01 U5P 4.1.1.23 GO:0004590 ... P25971 10681442 MOAD: Ki=0.46mM
    7309 1dbt:A (2.4) BS02 U5P 4.1.1.23 GO:0004590 ... P25971 10681442 MOAD: Ki=0.46mM
    7310 1dbt:B (2.4) BS01 U5P 4.1.1.23 GO:0004590 ... P25971 10681442 MOAD: Ki=0.46mM
    7311 1dbt:B (2.4) BS02 U5P 4.1.1.23 GO:0004590 ... P25971 10681442 MOAD: Ki=0.46mM
    7312 1dbt:C (2.4) BS01 U5P 4.1.1.23 GO:0004590 ... P25971 10681442 MOAD: Ki=0.46mM
    7313 1dbv:O (2.5) BS01 NAD 1.2.1.12 GO:0000166 ... P00362 9175858
    7314 1dbv:P (2.5) BS01 NAD 1.2.1.12 GO:0000166 ... P00362 9175858
    7315 1dbv:Q (2.5) BS01 NAD 1.2.1.12 GO:0000166 ... P00362 9175858
    7316 1dbv:R (2.5) BS01 NAD 1.2.1.12 GO:0000166 ... P00362 9175858
    7317 1dc1:A (1.7) BS01 dna 3.1.21.4 GO:0003677 ... P70985 11250198
    7318 1dc1:A (1.7) BS02 dna 3.1.21.4 GO:0003677 ... P70985 11250198
    7319 1dc1:B (1.7) BS01 dna 3.1.21.4 GO:0003677 ... P70985 11250198
    7320 1dc1:B (1.7) BS02 dna 3.1.21.4 GO:0003677 ... P70985 11250198
    7321 1dc4:A (2.5) BS01 G3P 1.2.1.12 GO:0000166 ... P0A9B2 10978154
    7322 1dc4:B (2.5) BS01 G3P 1.2.1.12 GO:0000166 ... P0A9B2 10978154
    7323 1dc6:A (2.0) BS01 NAD 1.2.1.12 GO:0000166 ... P0A9B2 10978154
    7324 1dc6:B (2.0) BS01 NAD 1.2.1.12 GO:0000166 ... P0A9B2 10978154
    7325 1dca:A (2.2) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 8399159
    7326 1dcb:A (2.1) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 8399159
    7327 1dcc:A (2.2) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 7664080
    7328 1dce:B (2.0) BS01 ZN 2.5.1.60 GO:0003824 ... Q08603 10745007
    7329 1dce:D (2.0) BS01 ZN 2.5.1.60 GO:0003824 ... Q08603 10745007
    7330 1dck:A (2.0) BS01 MN ? GO:0000160 ... P10958 10647182
    7331 1dck:B (2.0) BS01 MN ? GO:0000160 ... P10958 10647182
    7332 1dcm:B (3.0) BS01 MG ? GO:0000160 ... P10958 10647182
    7333 1dcn:D (2.3) BS01 AS1 4.3.2.1 GO:0003824 ... P24058 10029536
    7334 1dcp:A (2.3) BS01 HBI 4.2.1.96 GO:0003713 ... P61459 8897596
    7335 1dcp:B (2.3) BS01 HBI 4.2.1.96 GO:0003713 ... P61459 8897596
    7336 1dcp:C (2.3) BS01 HBI 4.2.1.96 GO:0003713 ... P61459 8897596
    7337 1dcp:D (2.3) BS01 HBI 4.2.1.96 GO:0003713 ... P61459 8897596
    7338 1dcp:E (2.3) BS01 HBI 4.2.1.96 GO:0003713 ... P61459 8897596
    7339 1dcp:F (2.3) BS01 HBI 4.2.1.96 GO:0003713 ... P61459 8897596
    7340 1dcp:G (2.3) BS01 HBI 4.2.1.96 GO:0003713 ... P61459 8897596
    7341 1dcp:H (2.3) BS01 HBI 4.2.1.96 GO:0003713 ... P61459 8897596
    7342 1dcq:A (2.1) BS01 ZN ? GO:0005096 ... Q7SIG6 10601011
    7343 1dct:A (2.8) BS01 dna 2.1.1.37 GO:0003677 ... P20589 7606780
    7344 1dct:A (2.8) BS02 dna 2.1.1.37 GO:0003677 ... P20589 7606780
    7345 1dct:A (2.8) BS03 dna 2.1.1.37 GO:0003677 ... P20589 7606780
    7346 1dct:A (2.8) BS04 dna 2.1.1.37 GO:0003677 ... P20589 7606780
    7347 1dct:B (2.8) BS01 dna 2.1.1.37 GO:0003677 ... P20589 7606780
    7348 1dct:B (2.8) BS02 dna 2.1.1.37 GO:0003677 ... P20589 7606780
    7349 1dct:B (2.8) BS03 dna 2.1.1.37 GO:0003677 ... P20589 7606780
    7350 1dcy:A (2.7) BS01 CA 3.1.1.4 GO:0004623 ... P14555 7664108
    7351 1dcy:A (2.7) BS02 CA 3.1.1.4 GO:0004623 ... P14555 7664108
    7352 1dcy:A (2.7) BS03 I3N 3.1.1.4 GO:0004623 ... P14555 7664108 BindingDB: IC50=13600nM
    7353 1dd1:A (2.62) BS01 SO4 ? GO:0006355 ... Q13485 10647180
    7354 1dd1:B (2.62) BS01 SO4 ? GO:0006355 ... Q13485 10647180
    7355 1dd1:B (2.62) BS02 SO4 ? GO:0006355 ... Q13485 10647180
    7356 1dd1:B (2.62) BS03 SO4 ? GO:0006355 ... Q13485 10647180
    7357 1dd1:C (2.62) BS01 SO4 ? GO:0006355 ... Q13485 10647180
    7358 1dd1:C (2.62) BS02 SO4 ? GO:0006355 ... Q13485 10647180
    7359 1dd1:C (2.62) BS03 SO4 ? GO:0006355 ... Q13485 10647180
    7360 1dd1:C (2.62) BS04 SO4 ? GO:0006355 ... Q13485 10647180
    7361 1dd4:A (2.4) BS01 TBR ? GO:0003729 ... P29396 10637222
    7362 1dd4:A (2.4) BS02 TBR ? GO:0003729 ... P29396 10637222
    7363 1dd4:B (2.4) BS01 TBR ? GO:0003729 ... P29396 10637222
    7364 1dd6:A (2.0) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 10757977
    7365 1dd6:A (2.0) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 10757977
    7366 1dd6:A (2.0) BS03 MCI 3.5.2.6 GO:0008270 ... P52699 10757977
    7367 1dd6:B (2.0) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 10757977
    7368 1dd6:B (2.0) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 10757977
    7369 1dd6:B (2.0) BS03 MCI 3.5.2.6 GO:0008270 ... P52699 10757977
    7370 1dd7:A (2.25) BS01 SO3 1.14.13.39 GO:0004517 ... P29477 10677491
    7371 1dd7:A (2.25) BS02 HEM 1.14.13.39 GO:0004517 ... P29477 10677491
    7372 1dd7:A (2.25) BS03 1PM 1.14.13.39 GO:0004517 ... P29477 10677491 MOAD: ic50=28nM
    7373 1ddg:A (2.01) BS01 FAD 1.8.1.2 GO:0016491 ... P38038 10860732
    7374 1ddg:B (2.01) BS01 FAD 1.8.1.2 GO:0016491 ... P38038 10860732
    7375 1ddh:A (3.1) BS01 peptide ? N/A P01900 9761682
    7376 1ddi:A (2.51) BS01 FAD 1.8.1.2 GO:0016491 ... P38038 10860732
    7377 1ddi:A (2.51) BS02 NAP 1.8.1.2 GO:0016491 ... P38038 10860732
    7378 1ddk:A (3.1) BS01 ZN 3.5.2.6 GO:0008270 ... Q79MP6 10757977
    7379 1ddk:A (3.1) BS02 ZN 3.5.2.6 GO:0008270 ... Q79MP6 10757977
    7380 1ddl:A (2.7) BS01 rna ? GO:0005198 ... O89511 10966774
    7381 1ddl:A (2.7) BS02 rna ? GO:0005198 ... O89511 10966774
    7382 1ddl:B (2.7) BS01 rna ? GO:0005198 ... O89511 10966774
    7383 1ddl:C (2.7) BS01 rna ? GO:0005198 ... O89511 10966774
    7384 1ddm:A (-1.00) BS01 peptide ? N/A P16554 10747019
    7385 1ddn:A (3.0) BS01 dna ? GO:0003677 ... P0DJL7 9697776
    7386 1ddn:A (3.0) BS02 dna ? GO:0003677 ... P0DJL7 9697776
    7387 1ddn:B (3.0) BS01 dna ? GO:0003677 ... P0DJL7 9697776
    7388 1ddn:B (3.0) BS02 dna ? GO:0003677 ... P0DJL7 9697776
    7389 1ddn:C (3.0) BS01 dna ? GO:0003677 ... P0DJL7 9697776
    7390 1ddn:C (3.0) BS02 dna ? GO:0003677 ... P0DJL7 9697776
    7391 1ddn:D (3.0) BS01 dna ? GO:0003677 ... P0DJL7 9697776
    7392 1ddn:D (3.0) BS02 dna ? GO:0003677 ... P0DJL7 9697776
    7393 1ddo:A (3.1) BS01 FAD 1.4.3.3 GO:0003884 ... P00371 9153426
    7394 1ddo:A (3.1) BS02 ITR 1.4.3.3 GO:0003884 ... P00371 9153426
    7395 1ddo:B (3.1) BS01 FAD 1.4.3.3 GO:0003884 ... P00371 9153426
    7396 1ddo:B (3.1) BS02 ITR 1.4.3.3 GO:0003884 ... P00371 9153426
    7397 1ddo:C (3.1) BS01 FAD 1.4.3.3 GO:0003884 ... P00371 9153426
    7398 1ddo:C (3.1) BS02 ITR 1.4.3.3 GO:0003884 ... P00371 9153426
    7399 1ddo:D (3.1) BS01 FAD 1.4.3.3 GO:0003884 ... P00371 9153426
    7400 1ddo:D (3.1) BS02 ITR 1.4.3.3 GO:0003884 ... P00371 9153426

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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